View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11776_low_36 (Length: 238)

Name: NF11776_low_36
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11776_low_36
NF11776_low_36
[»] chr3 (14 HSPs)
chr3 (1-221)||(2768766-2768986)
chr3 (1-221)||(2856031-2856251)
chr3 (1-221)||(2748695-2748915)
chr3 (1-221)||(2818254-2818474)
chr3 (1-210)||(5412604-5412813)
chr3 (1-212)||(2797058-2797269)
chr3 (1-221)||(2758911-2759131)
chr3 (1-221)||(2838824-2839041)
chr3 (75-212)||(2790138-2790275)
chr3 (73-221)||(2807039-2807187)
chr3 (1-46)||(2755741-2755786)
chr3 (1-42)||(2790055-2790096)
chr3 (128-186)||(22648771-22648829)
chr3 (1-42)||(2806958-2806999)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-217)||(6377-6593)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2768766 - 2768986
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |  ||  || ||||||||||||||||||||||||||||||    
T  2768766 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatcttcaagattgcaagcc 2768865  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2768866 taatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggtatagctt 2768965  T
Q  201 tcaaacttcacatgaacaagg 221  Q
    |||||||||||||||||||||    
T  2768966 tcaaacttcacatgaacaagg 2768986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2856251 - 2856031
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| |  | |||| | ||||||||| ||  |||| || ||||||    
T  2856251 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtcaacaaggttacaagcc 2856152  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
     |||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||    
T  2856151 gaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggtataactt 2856052  T
Q  201 tcaaacttcacatgaacaagg 221  Q
    ||||| |||||| || |||||    
T  2856051 tcaaatttcacacgagcaagg 2856031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2748695 - 2748915
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| | |   |||| ||||| |  ||| |||||||||||||| ||  |||||||||||| |    
T  2748695 gcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtcggcaagattgcaaggc 2748794  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
     |||||||||||||| |||||||||| | || ||||| || |||||||||||||| || |||||| ||||||||||||||||||| |||||||||| |||    
T  2748795 aaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactt 2748894  T
Q  201 tcaaacttcacatgaacaagg 221  Q
    ||||| |||||| ||||||||    
T  2748895 tcaaatttcacacgaacaagg 2748915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2818254 - 2818474
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| | ||||  ||||    || |||||| |||||||  | | ||||||| ||||      
T  2818254 gcatcatttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagattccaagat 2818353  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
    |||| || ||||||||||||||| || |||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||    
T  2818354 taatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggtataactt 2818453  T
Q  201 tcaaacttcacatgaacaagg 221  Q
     |||| ||| |||||||||||    
T  2818454 ccaaatttcgcatgaacaagg 2818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 5412604 - 5412813
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    ||||||||||||||||||||||||||||| ||||||| |||| | |   |||| | ||| |  | ||||||| |||||||| ||| |||||||||||||     
T  5412604 gcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagattgcaagct 5412703  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
    | ||||||||||||| ||||| |||| | || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||    
T  5412704 tgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggtataactt 5412803  T
Q  201 tcaaacttca 210  Q
    ||||| ||||    
T  5412804 tcaaatttca 5412813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 2797058 - 2797269
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    |||||||||||||||||||||||||||||||||||||||| | |||   |||| ||| | |  || ||||||||||||||| ||| |||||||||||| |    
T  2797058 gcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagattgcaagtc 2797157  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
    |||||||||| |||| | ||| |||  | || ||||| |||||| || |||||||| | |||||| ||||||||||||||||||| |||||||||| |||    
T  2797158 taatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggtataactt 2797257  T
Q  201 tcaaacttcaca 212  Q
    ||||| ||||||    
T  2797258 tcaaatttcaca 2797269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2758911 - 2759131
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    ||||| ||||||||||||||| | ||||| |||||||||||| ||| | |||  ||||| |  |||||  |||||||| || ||  ||||||| ||||||    
T  2758911 gcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcc 2759010  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
     |||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||| || |||||   ||||||||||||||||||| |||||||| |||    
T  2759011 caatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactt 2759110  T
Q  201 tcaaacttcacatgaacaagg 221  Q
    ||||| |||| ||||||||||    
T  2759111 tcaaatttcaaatgaacaagg 2759131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2839041 - 2838824
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||  | |   |||| ||||| |  ||||||||| ||||||||   | || || | ||||      
T  2839041 gcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatcttta---tgcatgactccaaggt 2838945  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||| || ||| |   ||||||||| |||||||||||||||||| |||    
T  2838944 taatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataactt 2838845  T
Q  201 tcaaacttcacatgaacaagg 221  Q
    ||||| |||| ||||||||||    
T  2838844 tcaaatttcaaatgaacaagg 2838824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 2790138 - 2790275
Alignment:
Q  75 atctttaatcttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatc 174  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||||| |||| | || ||||| |||||| |  |||||||| | |||||| ||||||||    
T  2790138 atctttattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatc 2790237  T
Q  175 aaggaaagaagcgagaggtatagctttcaaacttcaca 212  Q
    ||||||||||| |||||||||| |||||||| ||||||    
T  2790238 aaggaaagaagtgagaggtataactttcaaatttcaca 2790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 2807039 - 2807187
Alignment:
Q  73 ggatctttaatcttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaa 172  Q
    ||||||| | ||| |||||||||||||||  |||||||||||| |||||||||| | || |||||  |||| |  ||||||||| ||||  || | ||||    
T  2807039 ggatcttcattctacaagattgcaagcctggtcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaa 2807138  T
Q  173 tcaaggaaagaagcgagaggtatagctttcaaacttcacatgaacaagg 221  Q
    ||||||||||||| |||||||||| ||| |||| |||||||||||||||    
T  2807139 tcaaggaaagaagtgagaggtataacttacaaatttcacatgaacaagg 2807187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2755741 - 2755786
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttga 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2755741 gcatcatttcgcattgaagatgtcattgatgaataccttcggttga 2755786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2790055 - 2790096
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcgg 42  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  2790055 gcatcatttcgcattgaagatatcatcgatgaataccttcgg 2790096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 22648829 - 22648771
Alignment:
Q  128 aaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagc 186  Q
    |||||||||| |||||||| ||||||||||| |  ||| ||||||||||||||| ||||    
T  22648829 aaattgcatccgagattcaagacattaagttatttattcgtggaatcaaggaaaaaagc 22648771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2806958 - 2806999
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcgg 42  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  2806958 gcatcatttcgcattgaagatatcatcgatgaataccatcgg 2806999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 6593 - 6377
Alignment:
Q  1 gcatcatttcgcattgaagatgtcattgatgaataccttcggttgacctatagagccaaccaccctggatgcggatctttaatcttcaagattgcaagcc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| | |||| |||||||  |||||||||||||| ||| ||| |||||||| |||||    
T  6593 gcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaagcc 6494  T
Q  101 taatcaaaactttgactccccgtcataaaattgcatcggagattcaggacattaagttgtcaatttgtggaatcaaggaaagaagcgagaggtatagctt 200  Q
    ||||||||||||||| | | |  ||| | || ||||| |||||||||||||| ||| |||||||| ||||||||||||| ||||| || ||||||| |||    
T  6493 taatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataactt 6394  T
Q  201 tcaaacttcacatgaac 217  Q
    ||||| || ||||||||    
T  6393 tcaaattttacatgaac 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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