View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_38 (Length: 237)
Name: NF11776_low_38
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_38 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 48936046 - 48936257
Alignment:
| Q |
16 |
gtttggatgaaatttttattaaactcattagattcaaaaatacatgaacaaataaagataaaccaaatcaacaaagtacatattgtatcctcatctatcc |
115 |
Q |
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| T |
48936046 |
gtttggatgaa-tttttattaaactcattagattcaaaaataaatgaacagataaagataaaccaaatcaacaaagtacatattgtatcctcatctatcc |
48936144 |
T |
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| Q |
116 |
ttctatcacactctaaactctctaaaagagtccataatcaacataattataatagaacatgataaatgcattctgactatttttacctctgtcagcacca |
215 |
Q |
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| T |
48936145 |
ttctatcacactctaaactctctaaaagagtc---------cataattataatagaacatgataaatgcattctgactatttttacctctgtcagcacca |
48936235 |
T |
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| Q |
216 |
ccaaaacaattttattgactac |
237 |
Q |
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| T |
48936236 |
ccaaaacaattttattgactac |
48936257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 36969615 - 36969390
Alignment:
| Q |
16 |
gtttggatgaaatttttattaaactcattagattcaaaaatacatgaacaaataaagataaaccaaatcaacaaagtacatattgtatcctcatctatcc |
115 |
Q |
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| T |
36969615 |
gtttggatgaa-tttttattaaactcattagattcaaaaataaatgaacagataaagataaaccaaatcaacaaagtacatattgtatcctcatctatcc |
36969517 |
T |
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| Q |
116 |
ttctatcacactctaaactctctaaaagagtccataatcaacataattataatagaacatgataaatgcattctgacta-----tttttacctctgtcag |
210 |
Q |
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| T |
36969516 |
ttctatcacactctaaactctcttaaaaactccataatcaacataattataatagaacctgataaaggaattctgactattttatttttacttctttcag |
36969417 |
T |
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| Q |
211 |
caccaccaaaacaattttattgactac |
237 |
Q |
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| T |
36969416 |
caccaccaaaacaattttattgactac |
36969390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 47108831 - 47109043
Alignment:
| Q |
16 |
gtttggatgaaatttttattaaactcattagattcaaaaatacatgaacaaataaagataaaccaaatcaacaaagtacatattgtatcctcatctatcc |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
47108831 |
gtttggatgaa-tttttattaaactcattagattcaaaaataaatgaacagataaagataaaccaaatcgacaaagtacatatcgtatcctcatctatcc |
47108929 |
T |
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| Q |
116 |
ttctatcacactctaaactctct-aaaagagtccataatcaacataattataatagaacatgataaatgcattctgactatttttacctctgtcagcacc |
214 |
Q |
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||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||| | | ||||||||| ||| |||||||| |
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| T |
47108930 |
ttctatcacactctaaactctctaaaaaaaatccataatcaacataattataatagaacctgactatt---------ttatttttacatctttcagcacc |
47109020 |
T |
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| Q |
215 |
accaaaacaattttattgactac |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
47109021 |
accaaaacaattttattgactac |
47109043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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