View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11776_low_39 (Length: 211)
Name: NF11776_low_39
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 26532210 - 26532386
Alignment:
| Q |
20 |
ttaaacccacctttctccgcatacaccttacgcgcaccggaacactccccacaaagcacaaacctatgatcaccgcacacgtggcaaactagcgaatccg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26532210 |
ttaaacccacctttctccgcatacaccttacgcgcaccggaacactccccacaaagcacaaacctatgatcaccgcacacgtggcacactagcgaatccg |
26532309 |
T |
|
| Q |
120 |
ctacgggcaatccttcgagaagcttcttcagctcaccattctcgtgcagccacgtcacttcttgtgccccacctatg |
196 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26532310 |
ctacgggcaatccttcaagaagcttcttcagctcaccattctcgtgcagccacgttacttcttgtgccccacctatg |
26532386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University