View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11776_low_4 (Length: 598)

Name: NF11776_low_4
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11776_low_4
NF11776_low_4
[»] chr5 (7 HSPs)
chr5 (21-570)||(35904570-35905135)
chr5 (236-462)||(33618002-33618233)
chr5 (107-148)||(30502395-30502436)
chr5 (107-148)||(30542738-30542779)
chr5 (107-147)||(6471897-6471937)
chr5 (107-147)||(38749571-38749611)
chr5 (153-193)||(42893409-42893449)
[»] chr2 (8 HSPs)
chr2 (266-428)||(44831161-44831327)
chr2 (107-145)||(28677920-28677958)
chr2 (107-184)||(36756312-36756392)
chr2 (107-148)||(12668430-12668471)
chr2 (107-148)||(18276532-18276573)
chr2 (107-147)||(21616773-21616813)
chr2 (125-184)||(35056897-35056959)
chr2 (158-194)||(35449561-35449597)
[»] chr7 (14 HSPs)
chr7 (369-527)||(43725251-43725408)
chr7 (269-323)||(43725405-43725459)
chr7 (107-193)||(7438717-7438806)
chr7 (153-218)||(21880201-21880266)
chr7 (107-218)||(13770702-13770810)
chr7 (107-147)||(17307904-17307944)
chr7 (107-183)||(20549802-20549870)
chr7 (110-148)||(5835261-5835299)
chr7 (107-184)||(6630880-6630960)
chr7 (107-184)||(11665408-11665488)
chr7 (107-184)||(32308131-32308211)
chr7 (153-218)||(598257-598322)
chr7 (107-148)||(7328698-7328739)
chr7 (107-148)||(18013081-18013122)
[»] chr4 (8 HSPs)
chr4 (327-541)||(37023026-37023240)
chr4 (114-218)||(22234824-22234931)
chr4 (107-148)||(54580030-54580071)
chr4 (107-147)||(15029776-15029816)
chr4 (150-218)||(24613635-24613703)
chr4 (109-184)||(30982846-30982924)
chr4 (107-147)||(36635335-36635375)
chr4 (107-147)||(46180944-46180984)
[»] chr6 (13 HSPs)
chr6 (150-218)||(5000560-5000628)
chr6 (107-184)||(16766708-16766788)
chr6 (107-149)||(33468388-33468430)
chr6 (107-148)||(13851747-13851788)
chr6 (107-177)||(1532251-1532321)
chr6 (107-149)||(19040363-19040405)
chr6 (107-148)||(7265600-7265641)
chr6 (107-148)||(9025501-9025542)
chr6 (107-147)||(7151423-7151463)
chr6 (108-148)||(8931609-8931649)
chr6 (108-148)||(11591877-11591917)
chr6 (105-145)||(13360382-13360422)
chr6 (108-148)||(26562701-26562741)
[»] chr3 (8 HSPs)
chr3 (107-218)||(29508455-29508564)
chr3 (107-148)||(7928461-7928502)
chr3 (107-201)||(12704613-12704705)
chr3 (107-147)||(16192758-16192798)
chr3 (107-203)||(8039784-8039883)
chr3 (153-218)||(25093551-25093616)
chr3 (107-147)||(15314884-15314924)
chr3 (107-147)||(25948895-25948935)
[»] scaffold0050 (1 HSPs)
scaffold0050 (107-218)||(70289-70392)
[»] scaffold0036 (1 HSPs)
scaffold0036 (107-218)||(9681-9795)
[»] chr1 (15 HSPs)
chr1 (107-218)||(9828055-9828169)
chr1 (107-182)||(26238086-26238160)
chr1 (153-184)||(43492473-43492504)
chr1 (107-222)||(5898207-5898314)
chr1 (107-148)||(398772-398813)
chr1 (107-148)||(1486716-1486757)
chr1 (107-148)||(1864887-1864928)
chr1 (107-148)||(7918218-7918259)
chr1 (107-148)||(17754322-17754363)
chr1 (107-148)||(25361897-25361938)
chr1 (107-140)||(31672910-31672943)
chr1 (107-148)||(34712390-34712431)
chr1 (107-148)||(44482241-44482282)
chr1 (153-193)||(21530738-21530778)
chr1 (107-147)||(25098563-25098603)
[»] scaffold0123 (1 HSPs)
scaffold0123 (108-210)||(44467-44572)
[»] chr8 (3 HSPs)
chr8 (107-145)||(4611545-4611583)
chr8 (107-148)||(11927093-11927134)
chr8 (107-148)||(34897096-34897137)
[»] scaffold1528 (1 HSPs)
scaffold1528 (107-148)||(1046-1087)
[»] scaffold0066 (1 HSPs)
scaffold0066 (107-140)||(33378-33411)
[»] scaffold0697 (1 HSPs)
scaffold0697 (153-193)||(1693-1733)


Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 21 - 570
Target Start/End: Original strand, 35904570 - 35905135
Alignment:
Q  21 aaagccttacatttcttcacacatttcatacaaaaatgataatatactagactaaaaagttatgaaattgaatgcaaaggaccaagtaatttgaaaaaat 120  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35904570 aaagccttacatttcttcacacatttcatacaaagatcataatatactagactaaaaagttatgaaattgaatgcaatggaccaagtaatttgaaaaaat 35904669  T
Q  121 aacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagaca----------------caacacatgtccgacactagaacacgtttaatccgat 204  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||                |||||||||||||||||||| ||||| ||||||||||    
T  35904670 aacttaattcagtgtaattatatgtgtcttcatgttggtgtcagacacaacacatgtccgacacaacacatgtccgacactaggacacgcttaatccgat 35904769  T
Q  205 aagtgttcgtgctttatataaattaacaattaattacctggtggccaaaacaaacgccaaggatttttgtctgcatggagttcaatttcttaatcaatgt 304  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35904770 aagtgtccgtgctttatataaattaacaattaattacctggtggccaaaacaaacgccaatgatttttgtctgcatggagttcaatttcttaatcaatgt 35904869  T
Q  305 gacaagatcacatatccatttctcatttccataagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904870 gacaagatcacatatccatttctcatttccataagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaac 35904969  T
Q  405 tctccacatgaaactttgtacatgtcccatgtctcattttcttcctccaacattttcaagaatacaccagaataccctccatgcatctttatcacatact 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904970 tctccacatgaaactttgtacatgtcccatgtctcattttcttcctccaacattttcaagaatacaccagaataccctccatgcatctttatcacatact 35905069  T
Q  505 ctgaatcctctgcacataacaacgcaccaaatctcttgcaaccaattttctccattatcaagtagt 570  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35905070 ctgaatcctctgcacataacaacacaccaaatctcttgcaaccaattttctccattatcaagtagt 35905135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 236 - 462
Target Start/End: Complemental strand, 33618233 - 33618002
Alignment:
Q  236 aattacctggtggccaaaacaaacgccaaggatttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcacatatccatttctcatttcca 335  Q
    ||||||| |||||||||||| || ||||||||||||||| ||| || |||  |||| |||||||||||||||||| ||||||||| |||||| |||||||    
T  33618233 aattacccggtggccaaaaccaatgccaaggatttttgtgtgcttgaagtctaattacttaatcaatgtgacaaggtcacatatcaatttcttatttcca 33618134  T
Q  336 taagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtacatg-----tc 430  Q
    || |||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| || |||||| |||| ||||     |     
T  33618133 taggcatcactgcaactaccagtgatcacaaacccatcatagagactcaattcatcatccttagaaaactctcaacgtgaaacgttgtgcatgttccatt 33618034  T
Q  431 ccatgtctcattttcttcctccaacattttca 462  Q
    ||||||||| ||||||||||||||||||||||    
T  33618033 ccatgtctccttttcttcctccaacattttca 33618002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 30502436 - 30502395
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  30502436 taatttgagaaaatcacttaattcagtgtaattatatgtgtc 30502395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 30542779 - 30542738
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  30542779 taatttgagaaaatcacttaattcagtgtaattatatgtgtc 30542738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 6471937 - 6471897
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  6471937 taatttgagaaaatcacataattcagtgtaattatatgtgt 6471897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 38749611 - 38749571
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||||||||| || ||||||| |||||||||||||||    
T  38749611 taatttgaaaaaatgacataattcaatgtaattatatgtgt 38749571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 42893409 - 42893449
Alignment:
Q  153 tgtcggtgtcagacacaacacatgtccgacactagaacacg 193  Q
    ||||||||||||||||||||| |||||||||| || |||||    
T  42893409 tgtcggtgtcagacacaacacgtgtccgacaccaggacacg 42893449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 44831161 - 44831327
Alignment:
Q  266 gatttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcacatatccatttctcatttccataagcatcattacaactaccagt----gat 361  Q
    |||| |||| |||||| |||  ||||||||||||| ||||||||| ||||||||||| |||| ||||||| |||||||||| |||||||||||    |||    
T  44831161 gattcttgtgtgcatgtagtctaatttcttaatcattgtgacaaggtcacatatccacttcttatttccacaagcatcattgcaactaccagtgatcgat 44831260  T
Q  362 cacaaacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtacatg 428  Q
    ||||||||||||||| ||||||||  |||||||||||  ||||||||||| |||||| |||||||||    
T  44831261 cacaaacccatcatatagactcaatacatcatccttaaaaaactctccacgtgaaacattgtacatg 44831327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 28677920 - 28677958
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgt 145  Q
    |||||||||||||| || |||||||||||||||||||||    
T  28677920 taatttgaaaaaatcacataattcagtgtaattatatgt 28677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 36756392 - 36756312
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacac 184  Q
    ||||||||| ||||||| |||||||||||||||||| |||||    || |||  |||||  ||||||||||||||||||||    
T  36756392 taatttgaagaaataacataattcagtgtaattataagtgtcggtgtcgtgttagtgtcgaacacaacacatgtccgacac 36756312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 12668471 - 12668430
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||||||||| || |||||||||||||||||| |||||    
T  12668471 taatttgaaaaaatgacataattcagtgtaattataagtgtc 12668430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 18276532 - 18276573
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| |||||||||||||||||||| ||||||    
T  18276532 taatttgagaaaatcacttaattcagtgtaattatgtgtgtc 18276573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 21616773 - 21616813
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  21616773 taatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 35056897 - 35056959
Alignment:
Q  125 taattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacac 184  Q
    ||||||||||||||||||||||||    || |||||||||| ||||| |||| ||||||||||    
T  35056897 taattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacac 35056959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 35449561 - 35449597
Alignment:
Q  158 gtgtcagacacaacacatgtccgacactagaacacgt 194  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  35449561 gtgtcagacacgacacatgtccgacaccagaacacgt 35449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 43725408 - 43725251
Alignment:
Q  369 ccatcataaagactcaactcatcatcctta-ggaaactctccacatgaaacttt-gtacatgtcccatgtctcattttcttcctccaacattttcaagaa 466  Q
    |||||||| |||||||| ||| |||| ||| ||||||||||||| ||||||||| ||||||| || ||||||| |||||||| ||||   |||||| |||    
T  43725408 ccatcatagagactcaattcaccatctttaaggaaactctccacgtgaaacttttgtacatgacctatgtctccttttcttcatcca---ttttcaggaa 43725312  T
Q  467 tacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaac 527  Q
     || ||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  43725311 caccccaaaataccctccatacatctttatcacatgctctgaatcctctgcacacaacaac 43725251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 43725459 - 43725405
Alignment:
Q  269 ttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcacatatccat 323  Q
    |||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  43725459 ttttgtgtgcatggagtctaatttcttaatcaatgtgacaaggtcacatatccat 43725405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 7438717 - 7438806
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtct---tcatgtcggtgtcagacacaacacatgtccgacactagaacacg 193  Q
    |||||||||||||| || ||||||| |||||||| | |||||    |||||||||||||| |||| |||||||| ||||||||| |||||    
T  7438717 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaacacgacacatgtgcgacactaggacacg 7438806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 21880201 - 21880266
Alignment:
Q  153 tgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataagtgttcgtgctt 218  Q
    |||||||||| ||||| ||||||||||||||| || |||||  |||||||| |||||| |||||||    
T  21880201 tgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgctt 21880266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 13770702 - 13770810
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataa 206  Q
    |||||| ||||||| || |||||||||||||||| | ||||| |  |||| ||||| |||||||||| ||||||||||  |||||||  ||||||||  |    
T  13770702 taatttaaaaaaattacataattcagtgtaattacaagtgtcgt--tgtc-gtgtcggacacaacacgtgtccgacaccggaacacgcctaatccgaaga 13770798  T
Q  207 gtgttcgtgctt 218  Q
    |||| |||||||    
T  13770799 gtgtccgtgctt 13770810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 17307904 - 17307944
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgt 17307944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 20549802 - 20549870
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagacacaacacatgtccgaca 183  Q
    |||||||| ||||| || ||||||||||||||||||||        |||||||||| ||||||||||||||||||||    
T  20549802 taatttgagaaaatcacgtaattcagtgtaattatatg--------tgtcggtgtcggacacaacacatgtccgaca 20549870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 5835261 - 5835299
Alignment:
Q  110 tttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  5835261 tttgagaaaataacataattcagtgtaattatatgtgtc 5835299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 6630960 - 6630880
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacac 184  Q
    |||||||| ||| | |||||||||||||||||||||||||||    || ||| |||||| |||||||||| || |||||||    
T  6630960 taatttgagaaagtcacttaattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtgcccgacac 6630880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 11665488 - 11665408
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacac 184  Q
    |||||||||||||| || ||||||||| |||||||| |||||    |||||||||||||  |||| |||| ||||||||||    
T  11665488 taatttgaaaaaatcacataattcagtctaattataagtgtcgatgtcatgtcggtgtcgaacacgacacgtgtccgacac 11665408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 32308131 - 32308211
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacac 184  Q
    |||||||| ||||| || ||||||||||||||| ||||||||    || |||||||||  ||||| |||||||||||||||    
T  32308131 taatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggacacgacacatgtccgacac 32308211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 598257 - 598322
Alignment:
Q  153 tgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataagtgttcgtgctt 218  Q
    |||||||||||||||| |||| ||||||||||  | |||||  |||||||| |||||| |||||||    
T  598257 tgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 598322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 7328739 - 7328698
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| |||||||| ||||| ||||||||||||||||||    
T  7328739 taatttgagaaaataacataatttagtgtaattatatgtgtc 7328698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 18013122 - 18013081
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||| ||||||| || ||||||||||||||||||||||||    
T  18013122 taatttaaaaaaattacataattcagtgtaattatatgtgtc 18013081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 327 - 541
Target Start/End: Complemental strand, 37023240 - 37023026
Alignment:
Q  327 tcatttccataagcatcattacaactaccagtgatcacaaacccatcataaagactcaactcatcatccttaggaaactctccacatgaaactttgtaca 426  Q
    ||||||||||  |||||| ||||||||||||||||||||||||||||||| ||| |||| || ||||| |  |||||||| ||||  |  || || ||||    
T  37023240 tcatttccatgtgcatcactacaactaccagtgatcacaaacccatcatacagattcaaatcttcatcatctggaaactcaccacgcgccaccttataca 37023141  T
Q  427 tgtcccatgtctcattttcttcctccaacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaa 526  Q
      |||||  | |||  |||||||||||||||| |||  ||||| ||| |||||||||| | ||| ||  ||||||| |||||||| ||||||||||||||    
T  37023140 catcccagctttcaccttcttcctccaacattctcacaaataccccaaaataccctccgtacattttcttcacatattctgaatcatctgcacataacaa 37023041  T
Q  527 cgcaccaaatctctt 541  Q
    | | |||||||||||    
T  37023040 caccccaaatctctt 37023026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 22234931 - 22234824
Alignment:
Q  114 aaaaaataacttaattcagtgtaattatatgtgtct---tcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataagtgt 210  Q
    ||||||| || ||||||||||||||| ||||||||    || |||||||||| ||||| |||| |||||||||| || ||||   |||||||| ||||||    
T  22234931 aaaaaatcacataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgt 22234832  T
Q  211 tcgtgctt 218  Q
    ||||||||    
T  22234831 tcgtgctt 22234824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 54580071 - 54580030
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||||||||| || |||||||||||||||||| |||||    
T  54580071 taatttgaaaaaatcacataattcagtgtaattataagtgtc 54580030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 15029776 - 15029816
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    ||||||||||| || || |||||||||||||||||||||||    
T  15029776 taatttgaaaatatcacataattcagtgtaattatatgtgt 15029816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 24613703 - 24613635
Alignment:
Q  150 tcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataagtgttcgtgctt 218  Q
    ||||||||||||||||||| |||| |||| ||||| || |||||| |||||| |  ||||| |||||||    
T  24613703 tcatgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgctt 24613635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 30982924 - 30982846
Alignment:
Q  109 atttgaaaaaataacttaattcagtgtaattatatgtgtct---tcatgtcggtgtcagacacaacacatgtccgacac 184  Q
    |||||| ||||| || || ||||||||||||||| |||||    || |||||||||||||||| |||| ||||||||||    
T  30982924 atttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacac 30982846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 36635335 - 36635375
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  36635335 taatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 46180984 - 46180944
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||| |||||||| |||||||||||||| ||||||||    
T  46180984 taatttgagaaaataacataattcagtgtaatcatatgtgt 46180944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 5000628 - 5000560
Alignment:
Q  150 tcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataagtgttcgtgctt 218  Q
    ||||||||||||||||||| |||||| |||||||| || |||||| ||||||||  |||||||||||||    
T  5000628 tcatgtcggtgtcagacacgacacatatccgacaccaggacacgtctaatccgaagagtgttcgtgctt 5000560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 16766708 - 16766788
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacac 184  Q
    |||||||||||||| || |||||||||||||||| | |||||    || |||||||||| |||||||||| ||||||||||    
T  16766708 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacac 16766788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 33468430 - 33468388
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtct 149  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  33468430 taatttgaaaaaataacttaattcaatgtaattatatatgtct 33468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 13851747 - 13851788
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  13851747 taatttgagaaaataacgtaattcagtgtaattatatgtgtc 13851788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 1532251 - 1532321
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagacacaacacatgt 177  Q
    |||||||| ||||| || ||||||||||||||||||||||   || ||| |||||||||||  ||||||||    
T  1532251 taatttgataaaattacataattcagtgtaattatatgtggtgtcgtgttggtgtcagacatcacacatgt 1532321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 19040363 - 19040405
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtct 149  Q
    |||||||| ||||| || |||||||||||||||||||||||||    
T  19040363 taatttgagaaaatcacataattcagtgtaattatatgtgtct 19040405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 7265641 - 7265600
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  7265641 taatttgagaaaatcacataattcagtgtaattatatgtgtc 7265600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 9025542 - 9025501
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  9025542 taatttgagaaaatcacataattcagtgtaattatatgtgtc 9025501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 7151423 - 7151463
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||||||||| || ||||| |||||||||||||||||    
T  7151423 taatttgaaaaaatcacataattaagtgtaattatatgtgt 7151463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 8931649 - 8931609
Alignment:
Q  108 aatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    ||||||| |||||||| ||||||||| ||||||||||||||    
T  8931649 aatttgagaaaataacataattcagtataattatatgtgtc 8931609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 11591917 - 11591877
Alignment:
Q  108 aatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    ||||||| ||||| || ||||||||||||||||||||||||    
T  11591917 aatttgagaaaatcacataattcagtgtaattatatgtgtc 11591877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 13360422 - 13360382
Alignment:
Q  105 agtaatttgaaaaaataacttaattcagtgtaattatatgt 145  Q
    |||||||||| ||||| || |||||||||||||||||||||    
T  13360422 agtaatttgagaaaatcacataattcagtgtaattatatgt 13360382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 26562701 - 26562741
Alignment:
Q  108 aatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    ||||||| ||||| || ||||||||||||||||||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgtc 26562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 29508455 - 29508564
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataa 206  Q
    |||||||||||||| |  ||||||||||||||||||||||||   |||| |||||| ||||| ||||| |||||||||  | |||||| |||||| | ||    
T  29508455 taatttgaaaaaatcatataattcagtgtaattatatgtgtc--gatgttggtgtcggacacgacacacgtccgacaccgggacacgtctaatccaagaa 29508552  T
Q  207 gtgttcgtgctt 218  Q
    |||| |||||||    
T  29508553 gtgtccgtgctt 29508564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 7928461 - 7928502
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  7928461 taatttgaaaaaatcacataattcagtgtaattatatgtgtc 7928502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 12704705 - 12704613
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagacac-aacacatgtccgacactagaacacgtttaatcc 201  Q
    |||||||||||||| || ||||||| |||||| ||| ||||| |   ||||||||| ||||| ||| |||||||||||| ||||||||| ||||||    
T  12704705 taatttgaaaaaatgacataattcaatgtaatcataggtgtcgt---gtcggtgtcggacaccaacgcatgtccgacaccagaacacgtctaatcc 12704613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 16192798 - 16192758
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  16192798 taatttgagaaaataacataattcagtgtaattatatgtgt 16192758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 8039883 - 8039784
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccga 203  Q
    |||||||| ||||| |  ||||||||||||||||||||||||    || |||||||||| ||||  | |||||||||||||  | ||||| |||||||||    
T  8039883 taatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccga 8039784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 25093551 - 25093616
Alignment:
Q  153 tgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataagtgttcgtgctt 218  Q
    |||||||||| ||||||||||||||||||||||  | ||| | ||||| ||  |||||||||||||    
T  25093551 tgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtgctt 25093616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 15314924 - 15314884
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||||||||| || ||||| |||||||||||||||||    
T  15314924 taatttgaaaaaatcacataatttagtgtaattatatgtgt 15314884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 25948935 - 25948895
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||||||||| || |||||||||||||||||| ||||    
T  25948935 taatttgaaaaaatcacataattcagtgtaattataagtgt 25948895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 70289 - 70392
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataa 206  Q
    ||||||||||||||||| |||||||||||||||||| |        |||||||||| ||||| |||| |||||||||| || ||| |  ||||||||| |    
T  70289 taatttgaaaaaataacataattcagtgtaattataag--------tgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatga 70380  T
Q  207 gtgttcgtgctt 218  Q
    ||||||||||||    
T  70381 gtgttcgtgctt 70392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 9795 - 9681
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccga 203  Q
    |||||||| ||||| |||||||||||||||||||||||||||    || ||| |||||||||||| |||| |||| ||||   | |||||| ||||||||    
T  9795 taatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtctgacatcgggacacgtataatccga 9696  T
Q  204 taagtgttcgtgctt 218  Q
      ||||| |||||||    
T  9695 ggagtgtccgtgctt 9681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 9828055 - 9828169
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccga 203  Q
    |||||||| ||||| || ||||||||||||||| ||||||||    || |||| ||||||||||| |||| ||||||||||  | |||||| ||||||||    
T  9828055 taatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccga 9828154  T
Q  204 taagtgttcgtgctt 218  Q
      ||||| |||||||    
T  9828155 ggagtgtccgtgctt 9828169  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 26238160 - 26238086
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagacacaacacatgtccgac 182  Q
    |||||||| |||||||| ||||||||||||| ||||||||||    |||||||||| |||||||||| ||||||||    
T  26238160 taatttgagaaaataacataattcagtgtaa-tatatgtgtcagtgtgtcggtgtcggacacaacacgtgtccgac 26238086  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 184
Target Start/End: Complemental strand, 43492504 - 43492473
Alignment:
Q  153 tgtcggtgtcagacacaacacatgtccgacac 184  Q
    ||||||||||||||||||||||||||||||||    
T  43492504 tgtcggtgtcagacacaacacatgtccgacac 43492473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 5898314 - 5898207
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtcttcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgataa 206  Q
    |||| ||||||||| || |||||||||||||||||||| |||        |||||||||||| |||| ||||| ||||  | |||||| ||||||||  |    
T  5898314 taatctgaaaaaatcacataattcagtgtaattatatgcgtc--------ggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgagga 5898223  T
Q  207 gtgttcgtgctttata 222  Q
    |||| |||||||||||    
T  5898222 gtgtccgtgctttata 5898207  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 398813 - 398772
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||||||||| || |||||||||||||||||| |||||    
T  398813 taatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 1486757 - 1486716
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||||||||| || |||||||||||||||||| |||||    
T  1486757 taatttgaaaaaatcacataattcagtgtaattataagtgtc 1486716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 1864928 - 1864887
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  1864928 taatttgagaaaatcacataattcagtgtaattatatgtgtc 1864887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 7918259 - 7918218
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  7918259 taatttgagaaaatcacataattcagtgtaattatatgtgtc 7918218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 17754322 - 17754363
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||||||||| || ||||||||||||| ||||||||||    
T  17754322 taatttgaaaaaattacataattcagtgtaactatatgtgtc 17754363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 25361897 - 25361938
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  25361897 taatttgagaaaatcacataattcagtgtaattatatgtgtc 25361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 31672943 - 31672910
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaatta 140  Q
    |||||||||||||| |||||||||||||||||||    
T  31672943 taatttgaaaaaatcacttaattcagtgtaatta 31672910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 34712431 - 34712390
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| |||||||| ||||| ||||||||||||||||||    
T  34712431 taatttgagaaaataacataatttagtgtaattatatgtgtc 34712390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 44482241 - 44482282
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  44482241 taatttgagaaaatcacataattcagtgtaattatatgtgtc 44482282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 21530738 - 21530778
Alignment:
Q  153 tgtcggtgtcagacacaacacatgtccgacactagaacacg 193  Q
    |||||||||| ||||| |||||||||||||||||| |||||    
T  21530738 tgtcggtgtcggacacgacacatgtccgacactaggacacg 21530778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 25098603 - 25098563
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgt 147  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  25098603 taatttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 44572 - 44467
Alignment:
Q  108 aatttgaaaaaataacttaattcagtgtaattatatgtgtc---ttcatgtcggtgtcagacacaacacatgtccgacactagaacacgtttaatccgat 204  Q
    ||||||| ||||| || ||||||||||||||||||||||||    || |||||||||  |||||||||| ||||||||||| | ||| | |||||| ||     
T  44572 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgttggacacaacacgtgtccgacactgggacatggttaatctgag 44473  T
Q  205 aagtgt 210  Q
    ||||||    
T  44472 aagtgt 44467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 4611545 - 4611583
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgt 145  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  4611545 taatttgagaaaataacataattcagtgtaattatatgt 4611583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 11927134 - 11927093
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  11927134 taatttgataaaatcacataattcagtgtaattatatgtgtc 11927093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 34897096 - 34897137
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  34897096 taatttgagaaaatcacataattcagtgtaattatatgtgtc 34897137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 1046 - 1087
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaattatatgtgtc 148  Q
    |||||||||||||| || ||||||||||||| ||||||||||    
T  1046 taatttgaaaaaattacataattcagtgtaactatatgtgtc 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 33411 - 33378
Alignment:
Q  107 taatttgaaaaaataacttaattcagtgtaatta 140  Q
    ||||||||||||||||| ||||||||||||||||    
T  33411 taatttgaaaaaataacataattcagtgtaatta 33378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 1693 - 1733
Alignment:
Q  153 tgtcggtgtcagacacaacacatgtccgacactagaacacg 193  Q
    |||||||||| ||||| |||||||||||||||||| |||||    
T  1693 tgtcggtgtcggacacgacacatgtccgacactaggacacg 1733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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