View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11776_low_7 (Length: 527)

Name: NF11776_low_7
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11776_low_7
NF11776_low_7
[»] chr4 (7 HSPs)
chr4 (490-524)||(2516243-2516277)
chr4 (490-527)||(28073187-28073224)
chr4 (490-522)||(50870487-50870519)
chr4 (495-524)||(5398487-5398516)
chr4 (494-527)||(39902573-39902606)
chr4 (494-526)||(17111605-17111637)
chr4 (490-522)||(53828529-53828561)
[»] chr3 (8 HSPs)
chr3 (490-524)||(20303391-20303425)
chr3 (490-524)||(8019012-8019046)
chr3 (490-524)||(16239871-16239905)
chr3 (486-524)||(27670394-27670432)
chr3 (490-527)||(7697404-7697441)
chr3 (490-523)||(13574927-13574960)
chr3 (494-527)||(35038438-35038471)
chr3 (494-527)||(47702419-47702452)
[»] chr6 (6 HSPs)
chr6 (488-525)||(6066018-6066055)
chr6 (494-524)||(6623420-6623450)
chr6 (490-524)||(13740960-13740994)
chr6 (490-524)||(13746460-13746494)
chr6 (490-524)||(27656502-27656536)
chr6 (490-522)||(3680058-3680090)
[»] chr5 (8 HSPs)
chr5 (492-523)||(29434341-29434372)
chr5 (490-524)||(8287845-8287879)
chr5 (490-524)||(15480603-15480637)
chr5 (483-524)||(18333463-18333505)
chr5 (484-524)||(9682315-9682356)
chr5 (484-524)||(18333698-18333739)
chr5 (492-524)||(7369768-7369800)
chr5 (480-519)||(9368879-9368919)
[»] scaffold0048 (1 HSPs)
scaffold0048 (490-524)||(82120-82154)
[»] scaffold0024 (1 HSPs)
scaffold0024 (490-524)||(89559-89593)
[»] chr8 (6 HSPs)
chr8 (490-524)||(4828337-4828371)
chr8 (490-524)||(4963398-4963432)
chr8 (490-524)||(16962252-16962286)
chr8 (490-524)||(26800518-26800552)
chr8 (483-523)||(44694707-44694748)
chr8 (485-524)||(8929061-8929101)
[»] chr2 (4 HSPs)
chr2 (490-524)||(36352165-36352199)
chr2 (494-523)||(25082547-25082576)
chr2 (495-527)||(5509120-5509152)
chr2 (490-522)||(21383290-21383322)
[»] chr1 (10 HSPs)
chr1 (490-524)||(25137309-25137343)
chr1 (494-524)||(26173466-26173496)
chr1 (494-527)||(15986343-15986376)
chr1 (494-527)||(29265994-29266027)
chr1 (483-527)||(31181511-31181556)
chr1 (490-523)||(38080649-38080682)
chr1 (494-527)||(52127761-52127794)
chr1 (490-527)||(52650777-52650814)
chr1 (484-524)||(52676507-52676548)
chr1 (494-522)||(8870920-8870948)
[»] chr7 (4 HSPs)
chr7 (490-523)||(48417521-48417554)
chr7 (495-527)||(7786265-7786297)
chr7 (495-527)||(36993085-36993117)
chr7 (490-522)||(40746311-40746343)


Alignment Details
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 2516277 - 2516243
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||||||||||||||||||||||||||    
T  2516277 aattgtggttggacctaacacaaccccacaaaacc 2516243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 527
Target Start/End: Original strand, 28073187 - 28073224
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaaccagc 527  Q
    |||||||||||| |||||||||||||||||||||||||    
T  28073187 aattgtggttgggcctaacacaaccccacaaaaccagc 28073224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 522
Target Start/End: Original strand, 50870487 - 50870519
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaa 522  Q
    |||||||||||||||||||||||||||||||||    
T  50870487 aattgtggttggacctaacacaaccccacaaaa 50870519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 524
Target Start/End: Original strand, 5398487 - 5398516
Alignment:
Q  495 tggttggacctaacacaaccccacaaaacc 524  Q
    ||||||||||||||||||||||||||||||    
T  5398487 tggttggacctaacacaaccccacaaaacc 5398516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 527
Target Start/End: Original strand, 39902573 - 39902606
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaaccagc 527  Q
    |||||||| |||||||||||||||||||||||||    
T  39902573 gtggttgggcctaacacaaccccacaaaaccagc 39902606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 494 - 526
Target Start/End: Complemental strand, 17111637 - 17111605
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaaccag 526  Q
    |||||||| ||||||||||||||||||||||||    
T  17111637 gtggttgggcctaacacaaccccacaaaaccag 17111605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 522
Target Start/End: Original strand, 53828529 - 53828561
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaa 522  Q
    |||||||||||| ||||||||||||||||||||    
T  53828529 aattgtggttgggcctaacacaaccccacaaaa 53828561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 20303391 - 20303425
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||||||||||||||||||||||||||    
T  20303391 aattgtggttggacctaacacaaccccacaaaacc 20303425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 8019046 - 8019012
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  8019046 aattgtggttgggcctaacacaaccccacaaaacc 8019012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 16239905 - 16239871
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    ||||||| |||||||||||||||||||||||||||    
T  16239905 aattgtgcttggacctaacacaaccccacaaaacc 16239871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 524
Target Start/End: Original strand, 27670394 - 27670432
Alignment:
Q  486 ttagaattgtggttggacctaacacaaccccacaaaacc 524  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  27670394 ttagaatggtggttgggcctaacacaaccccacaaaacc 27670432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 527
Target Start/End: Original strand, 7697404 - 7697441
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaaccagc 527  Q
    |||||||||| | |||||||||||||||||||||||||    
T  7697404 aattgtggttaggcctaacacaaccccacaaaaccagc 7697441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 523
Target Start/End: Original strand, 13574927 - 13574960
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaac 523  Q
    |||||||||||| |||||||||||||||||||||    
T  13574927 aattgtggttgggcctaacacaaccccacaaaac 13574960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 527
Target Start/End: Original strand, 35038438 - 35038471
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaaccagc 527  Q
    |||||||| |||||||||||||||||||||||||    
T  35038438 gtggttgggcctaacacaaccccacaaaaccagc 35038471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 527
Target Start/End: Original strand, 47702419 - 47702452
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaaccagc 527  Q
    |||||||| |||||||||||||||||||||||||    
T  47702419 gtggttgggcctaacacaaccccacaaaaccagc 47702452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 525
Target Start/End: Complemental strand, 6066055 - 6066018
Alignment:
Q  488 agaattgtggttggacctaacacaaccccacaaaacca 525  Q
    |||||||||||||| |||||||||||||||||||||||    
T  6066055 agaattgtggttgggcctaacacaaccccacaaaacca 6066018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 524
Target Start/End: Original strand, 6623420 - 6623450
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||||||||||||||||||||||    
T  6623420 gtggttggacctaacacaaccccacaaaacc 6623450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 13740994 - 13740960
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  13740994 aattgtggttgggcctaacacaaccccacaaaacc 13740960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 13746494 - 13746460
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  13746494 aattgtggttgggcctaacacaaccccacaaaacc 13746460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 27656536 - 27656502
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  27656536 aattgtggttgggcctaacacaaccccacaaaacc 27656502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 522
Target Start/End: Complemental strand, 3680090 - 3680058
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaa 522  Q
    |||||||||||| ||||||||||||||||||||    
T  3680090 aattgtggttgggcctaacacaaccccacaaaa 3680058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 523
Target Start/End: Complemental strand, 29434372 - 29434341
Alignment:
Q  492 ttgtggttggacctaacacaaccccacaaaac 523  Q
    ||||||||||||||||||||||||||||||||    
T  29434372 ttgtggttggacctaacacaaccccacaaaac 29434341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 8287879 - 8287845
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  8287879 aattgtggttgggcctaacacaaccccacaaaacc 8287845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 15480637 - 15480603
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  15480637 aattgtggttgggcctaacacaaccccacaaaacc 15480603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 18333463 - 18333505
Alignment:
Q  483 ttcttagaatt-gtggttggacctaacacaaccccacaaaacc 524  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  18333463 ttcttagaatttgtggttgggcctaacacaaccccacaaaacc 18333505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 524
Target Start/End: Original strand, 9682315 - 9682356
Alignment:
Q  484 tcttagaatt-gtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  9682315 tcttagaatttgtggttggacctaacacaacctcacaaaacc 9682356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 524
Target Start/End: Original strand, 18333698 - 18333739
Alignment:
Q  484 tcttagaatt-gtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  18333698 tcttagaattcgtggttgggcctaacacaaccccacaaaacc 18333739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 492 - 524
Target Start/End: Complemental strand, 7369800 - 7369768
Alignment:
Q  492 ttgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||| ||||||||||||||||||||||    
T  7369800 ttgtggttgggcctaacacaaccccacaaaacc 7369768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 480 - 519
Target Start/End: Complemental strand, 9368919 - 9368879
Alignment:
Q  480 tttttcttagaa-ttgtggttggacctaacacaaccccaca 519  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  9368919 tttttcttagaaattgtggttgggcctaacacaaccccaca 9368879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 82154 - 82120
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  82154 aattgtggttgggcctaacacaaccccacaaaacc 82120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 89559 - 89593
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    ||||||||||||||||||||||||| |||||||||    
T  89559 aattgtggttggacctaacacaacctcacaaaacc 89593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 4828371 - 4828337
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  4828371 aattgtggttgggcctaacacaaccccacaaaacc 4828337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 4963432 - 4963398
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  4963432 aattgtggttgggcctaacacaaccccacaaaacc 4963398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 16962252 - 16962286
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    ||||||||||||||||||||||| |||||||||||    
T  16962252 aattgtggttggacctaacacaatcccacaaaacc 16962286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 26800518 - 26800552
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  26800518 aattgtggttgggcctaacacaaccccacaaaacc 26800552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 523
Target Start/End: Original strand, 44694707 - 44694748
Alignment:
Q  483 ttcttagaatt-gtggttggacctaacacaaccccacaaaac 523  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  44694707 ttcttagaatttgtggttgggcctaacacaaccccacaaaac 44694748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 485 - 524
Target Start/End: Complemental strand, 8929101 - 8929061
Alignment:
Q  485 cttagaatt-gtggttggacctaacacaaccccacaaaacc 524  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  8929101 cttagaattcgtggttgggcctaacacaaccccacaaaacc 8929061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 36352165 - 36352199
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    ||||||||||| |||||||||||||||||||||||    
T  36352165 aattgtggttgaacctaacacaaccccacaaaacc 36352199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Original strand, 25082547 - 25082576
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaac 523  Q
    ||||||||||||||||||||||||||||||    
T  25082547 gtggttggacctaacacaaccccacaaaac 25082576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 495 - 527
Target Start/End: Complemental strand, 5509152 - 5509120
Alignment:
Q  495 tggttggacctaacacaaccccacaaaaccagc 527  Q
    ||||||| |||||||||||||||||||||||||    
T  5509152 tggttgggcctaacacaaccccacaaaaccagc 5509120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 522
Target Start/End: Original strand, 21383290 - 21383322
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaa 522  Q
    |||||||||||| ||||||||||||||||||||    
T  21383290 aattgtggttgggcctaacacaaccccacaaaa 21383322  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 25137309 - 25137343
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||| ||||||||||||||||||||||    
T  25137309 aattgtggttgggcctaacacaaccccacaaaacc 25137343  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 524
Target Start/End: Original strand, 26173466 - 26173496
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||||||||||||||||||||||||    
T  26173466 gtggttggacctaacacaaccccacaaaacc 26173496  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 527
Target Start/End: Original strand, 15986343 - 15986376
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaaccagc 527  Q
    ||||||||||||||||||||||||||| ||||||    
T  15986343 gtggttggacctaacacaaccccacaataccagc 15986376  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 527
Target Start/End: Complemental strand, 29266027 - 29265994
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaaccagc 527  Q
    |||||||| |||||||||||||||||||||||||    
T  29266027 gtggttgggcctaacacaaccccacaaaaccagc 29265994  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 527
Target Start/End: Original strand, 31181511 - 31181556
Alignment:
Q  483 ttcttagaatt-gtggttggacctaacacaaccccacaaaaccagc 527  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||    
T  31181511 ttcttagaatttgtggttgggcctaacacaaccccataaaaccagc 31181556  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 523
Target Start/End: Complemental strand, 38080682 - 38080649
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaac 523  Q
    |||||||||||| |||||||||||||||||||||    
T  38080682 aattgtggttgggcctaacacaaccccacaaaac 38080649  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 527
Target Start/End: Complemental strand, 52127794 - 52127761
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaaccagc 527  Q
    ||||||||||||||||||||||||||||| ||||    
T  52127794 gtggttggacctaacacaaccccacaaaagcagc 52127761  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 527
Target Start/End: Original strand, 52650777 - 52650814
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaaccagc 527  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  52650777 aattatggttgggcctaacacaaccccacaaaaccagc 52650814  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 524
Target Start/End: Original strand, 52676507 - 52676548
Alignment:
Q  484 tcttagaatt-gtggttggacctaacacaaccccacaaaacc 524  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  52676507 tcttagaatttgtggttggacataacacaaccccacaaaacc 52676548  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 494 - 522
Target Start/End: Original strand, 8870920 - 8870948
Alignment:
Q  494 gtggttggacctaacacaaccccacaaaa 522  Q
    |||||||||||||||||||||||||||||    
T  8870920 gtggttggacctaacacaaccccacaaaa 8870948  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 523
Target Start/End: Original strand, 48417521 - 48417554
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaac 523  Q
    |||||||||||| |||||||||||||||||||||    
T  48417521 aattgtggttgggcctaacacaaccccacaaaac 48417554  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 495 - 527
Target Start/End: Original strand, 7786265 - 7786297
Alignment:
Q  495 tggttggacctaacacaaccccacaaaaccagc 527  Q
    ||||||| |||||||||||||||||||||||||    
T  7786265 tggttgggcctaacacaaccccacaaaaccagc 7786297  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 495 - 527
Target Start/End: Original strand, 36993085 - 36993117
Alignment:
Q  495 tggttggacctaacacaaccccacaaaaccagc 527  Q
    ||||||| |||||||||||||||||||||||||    
T  36993085 tggttgggcctaacacaaccccacaaaaccagc 36993117  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 522
Target Start/End: Complemental strand, 40746343 - 40746311
Alignment:
Q  490 aattgtggttggacctaacacaaccccacaaaa 522  Q
    |||||||||||| ||||||||||||||||||||    
T  40746343 aattgtggttgggcctaacacaaccccacaaaa 40746311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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