View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11777_high_1 (Length: 577)
Name: NF11777_high_1
Description: NF11777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11777_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 9496478 - 9495906
Alignment:
| Q |
1 |
gcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatgtatgtgaatcaccagccttcccttca |
100 |
Q |
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| T |
9496478 |
gcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatggatgtgaatcaccagccttcccttca |
9496379 |
T |
|
| Q |
101 |
atttctccaggtaagttattacccaaagaactagaagcatcatcatccactgctgcatctgtaactgatgaagaatgcaacactttcccaggtacatcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496378 |
atttctccaggtaagttattacccaaagaactagaagcatcatcatccactgctgaatctgtaactgatgaagaatgcaacactttcccaggtacatcat |
9496279 |
T |
|
| Q |
201 |
taccagacattacataacc--------------cagtccctacaggatcaaagggagagcaaaatgttgcagctgttggagatgctaaaccatttgtact |
286 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496278 |
taccagacattacataaccaacagtctgggtcccagtccctacaggatcaaagggagagcaaaatgttgcagctgttggagatgctaaaccatttgtact |
9496179 |
T |
|
| Q |
287 |
atatgaagaagagaaagcaaccatatcatccactgtcctattcatgtcagcttcacgcaaagcccataaactgtcatcagagctgagagagggaggccga |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496178 |
atatgaagaagagaaagcaaccatatcatccactgtcctattcatgtcagcttcacgcaaagcccataaactgtcatcagagctgagagagggaggccga |
9496079 |
T |
|
| Q |
387 |
gaaaaaccttttcctggattttcagaagggttccagtacattacaccgccaccaaagtattgattataatctataccagaaacagcatgaaagtcatact |
486 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496078 |
gaaaaaccttttcctggattttcagaagggttccagtacattacaccgccaccaaagtattgattataatctataccagaaacagcatgaaagtcatact |
9495979 |
T |
|
| Q |
487 |
cttcctctgatacatagaggttgtcaaattcatctgtgaactgtgtatttatttggtcaggtaaatctaatgt |
559 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9495978 |
cttcctctgatacatagaggttgtcaaattcatctgtgaactgtgtatttatttggtcaggtaaatccaatgt |
9495906 |
T |
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