View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11777_high_2 (Length: 570)
Name: NF11777_high_2
Description: NF11777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11777_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 31463572 - 31464111
Alignment:
| Q |
19 |
tatagcttcggggttgtagctttagagattgttagtggaatgagcaacacaaattatcggccaaaagaggagtttgtttatcttctggattgggtaagtt |
118 |
Q |
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| T |
31463572 |
tatagcttcggggttgtagctttagagattgttagtggaatgagcaacacaaattataggccaaaagaggagtttgtttatcttctggattgggtaagtt |
31463671 |
T |
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| Q |
119 |
acacttttgtgtggcctttagaaactgcgtttatcgtttcttcgatctaaatattcctggtgttttcatttatatcggaatcttcattctatttctctcc |
218 |
Q |
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| T |
31463672 |
acacttttgtgtggcctttagaaactgcgtttatcgtttcttcgatctaaatattcttggtgttttcatttatatcggaatcttcattctatttctctcc |
31463771 |
T |
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| Q |
219 |
aaaaacaataaatcatttcaaaatcaaatataataagttaagaattaaggtttattatatacattaaacaaaaggtgacattaataatagtatacttggt |
318 |
Q |
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| T |
31463772 |
aaaaacaataaatcatttcaaaatcaaatataataagttaagaattaaggtttattatatacattaaaccaaaggtgacattaataatagtatacttggt |
31463871 |
T |
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| Q |
319 |
caggttttttcatttgtgatttcccttgttttacaattatggtatggttaaattttttctaatactatattatgtacgtcattaaaaaaggcctatgttc |
418 |
Q |
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| T |
31463872 |
caggttttttcatttgtgatttcccttgttttacaattatggtatggttaaattttttctaatactatattttgtatgtcattaaaaaaggcctatgttc |
31463971 |
T |
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| Q |
419 |
tccaagaacaaggaaaccttctggaattggtggacccaactcttggttcaaaatactcctcagaagaggccatgagaatgctgcaactggcactcctttg |
518 |
Q |
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| T |
31463972 |
tccaagaacaaggaaaccttctggaattggtggacccaactcttggttcaaaatactcctcagaagaggccatgagaatgctgcaattggcactcctttg |
31464071 |
T |
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| Q |
519 |
caccaatccatctccaactcttagaccaccaatgtcatct |
558 |
Q |
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| T |
31464072 |
cactaatccatctccaactcttagaccaccaatgtcatct |
31464111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 20062674 - 20062770
Alignment:
| Q |
18 |
atatagcttcggggttgtagctttagagattgttagtggaatgagcaacacaaattatcggccaaaagaggagtttgtttatcttctggattgggta |
114 |
Q |
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| T |
20062674 |
atatagctttggagttgtagctttagagattgttgccggaaaaagcaacacaaatttccaaccaatggaggagtttgtatatcttcttgattgggta |
20062770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 469
Target Start/End: Original strand, 20063040 - 20063103
Alignment:
| Q |
406 |
aaggcctatgttctccaagaacaaggaaaccttctggaattggtggacccaactcttggttcaa |
469 |
Q |
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| T |
20063040 |
aaggcctatgatctcaaagatcaaggaaacctcctggagttggtggatccaagtcttggttcaa |
20063103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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