View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11777_high_3 (Length: 372)
Name: NF11777_high_3
Description: NF11777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11777_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 15262758 - 15263109
Alignment:
| Q |
7 |
agaaccgtcctgacagctactaatttggggaaataatgatagnnnnnnntggatgatattttttgcaatgaatgggccagtcattttttgttaatttctt |
106 |
Q |
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| T |
15262758 |
agaaccgtcctgacagctactaatttggggaaataatgatggaaaaaaatggatgatattttttgcaatgaatgggccagtcattatttgttaatttctt |
15262857 |
T |
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| Q |
107 |
aatctttatattgctaaatacattgtcattcatacaatcttgctatgttgttaatcatgaaatataatgcacccttatcaactaggttgtattatgggcc |
206 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15262858 |
aatctttatattgctaaatacattgtcattcatgcaatcttgctatgttgttaatcatgaaatataatgcacccttatcaactaggttgtattatgggcc |
15262957 |
T |
|
| Q |
207 |
ctctggttatactagtataacttgtgcttttccaagcatgtaatgttgattgctgtttttgcaaaaggcactttccttgaccctccttgtcttgtgacat |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15262958 |
ctctagttatactagtataacttgtgcttttccaagcatgtaatgttgattgctgtttttgcaaaaggcactttccttgaccctccttgtcttgtgacat |
15263057 |
T |
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| Q |
307 |
attagttgttacatattttcaatgttatttcatacatatcactatatctgtg |
358 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15263058 |
atcagttgttacatattttcaatgttatttcatacatatcactatatttgtg |
15263109 |
T |
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