View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11777_high_6 (Length: 239)
Name: NF11777_high_6
Description: NF11777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11777_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 53626600 - 53626822
Alignment:
| Q |
1 |
catcactagcaccaagcaagacttcaacggcaagggcattgctagctagcaatgcacttgcagcagtggcaacaacagcaactccaaagtctttgaggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53626600 |
catcactagcaccaagcaagacttcaacggcaagggcattgctagctagcaatgcacttgcagcagtggcaacaacagcaactccaaagtctttgaggga |
53626699 |
T |
|
| Q |
101 |
agctctgacacaaagccttggcaattgagaagttgaagttggaaccttagctatggcactaactttgcttgcgtttgccttaaggcctgtgaatgatgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53626700 |
agctctgacacaaagccttggcaattgagaatttgaagttggaaccttagctatggcactaactttgcttgcgtttgccttaaggcctgtgaatgatgga |
53626799 |
T |
|
| Q |
201 |
atagcaacggtggtggaagtaac |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
53626800 |
atagcaacggtggtggaagtaac |
53626822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University