View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11777_low_5 (Length: 272)
Name: NF11777_low_5
Description: NF11777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11777_low_5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 36864967 - 36864703
Alignment:
| Q |
8 |
aagcagagatttggtgggatattaccattaaacttgttattcttacgtccaacttcactaaggtattgttgattcccaagctttgaggaatgactcctga |
107 |
Q |
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| T |
36864967 |
aagcaaagatttggtgggatattaccattaaacttgttattcatacgtccaacttcactaaggtattgttgattcccaagctttgaggaatgactcctga |
36864868 |
T |
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| Q |
108 |
gaactgattgatgagatattttttagatacctgaggttcgtcatttcgaaaggtagttccccagagaggctgttgtggtgaaccaagatatgcacaaggc |
207 |
Q |
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| T |
36864867 |
gaactgattgatgagatattttttagatacctgaggttcgtcatttcgaaaggtagttccccagagaggctgttgtggtgaaccaagatatgcacaaggc |
36864768 |
T |
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| Q |
208 |
ttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggtcc |
272 |
Q |
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| T |
36864767 |
ttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggtcc |
36864703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 37836211 - 37835939
Alignment:
| Q |
8 |
aagcagagatttggtgggatattaccattaaacttgttattcttac-gtccaacttcactaaggtattgttgattcccaagctttgaggaatgactcctg |
106 |
Q |
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| T |
37836211 |
aagcaaagattgggtgggatattaccgctgaacttgttattcataccgtccaacttcactattctgctgttgattcctaagctttgaggtatgactcctg |
37836112 |
T |
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| Q |
107 |
agaactgattg-------atgagatattttttagatacctgaggttcgtcatttcgaaaggtagttccccagagaggctgttgtggtgaaccaagatatg |
199 |
Q |
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| T |
37836111 |
agaactgattatcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggcagttccccagagaggctgttgttgtgaaccaagatgtt |
37836012 |
T |
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| Q |
200 |
cacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggtcc |
272 |
Q |
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| T |
37836011 |
cacaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaaggtcc |
37835939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 37849574 - 37849314
Alignment:
| Q |
20 |
ggtgggatattaccattaaacttgttattcttac-gtccaacttcactaaggtattgttgattcccaagctttgaggaatgactcctgagaactgattg- |
117 |
Q |
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| T |
37849574 |
ggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgtttattcccaagctttgaggtgtgactcctgagaactgattat |
37849475 |
T |
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| Q |
118 |
------atgagatattttttagatacctgaggttcgtcatttcgaaaggtagttccccagagaggctgttgtggtgaaccaagatatgcacaaggcttga |
211 |
Q |
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| T |
37849474 |
caaacaatgagatattttttagatacttgagctttgtcatctcgaaaggtagttccctggagaggctgttgttgtgaaccaatatgtgcacaagacttga |
37849375 |
T |
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| Q |
212 |
aattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggtcc |
272 |
Q |
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| T |
37849374 |
aattctccaaacactgaccggaatttcgcctctcaaacggttgaaagaaaattcaaggtcc |
37849314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 37830501 - 37830236
Alignment:
| Q |
14 |
agatttggtgggatattaccattaaacttgttattcttac-gtccaacttcactaaggtattgttgattcccaagctttgaggaatgactcctgagaact |
112 |
Q |
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| T |
37830501 |
agatttggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgttgattcccaagctttgaggtatgactcctgagaact |
37830402 |
T |
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| Q |
113 |
gattg-------atgagatattttttagatacctgaggttcgtcatttcgaaaggtagttccccagagaggctgttgtggtgaaccaagatatgcacaag |
205 |
Q |
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| T |
37830401 |
gattttcaaacaatgagacattttttagacacttaaggtttgtgatttccaaaggtagttccccaaagagatcgttgttgtgaaccaagatgtgcacaag |
37830302 |
T |
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| Q |
206 |
gcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggtc |
271 |
Q |
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| T |
37830301 |
actttgaattctccaaatactgaccggaatttcacctctcaaacggttgaaagacaaatcaaggtc |
37830236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 37841830 - 37841558
Alignment:
| Q |
8 |
aagcagagatttggtgggatattaccattaaacttgttattcttac-gtccaacttcactaaggtattgttgattcccaagctttgaggaatgactcctg |
106 |
Q |
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| T |
37841830 |
aagcaaagattgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcctg |
37841731 |
T |
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| Q |
107 |
agaactgatt-------gatgagatattttttagatacctgaggttcgtcatttcgaaaggtagttccccagagaggctgttgtggtgaaccaagatatg |
199 |
Q |
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| T |
37841730 |
agaactgattatcaaacaatgagatatttcttagatacttgagctctgtcatctcaaaaggtagttctccagagaggctgttgttgtgaaccaagatgtg |
37841631 |
T |
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| Q |
200 |
cacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggtcc |
272 |
Q |
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| T |
37841630 |
caaaagactttgtattctccaaacaaagaccggaatttcacctctcaaacggttgaaagataagttaaggtcc |
37841558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 26640773 - 26640816
Alignment:
| Q |
74 |
tgttgattcccaagctttgaggaatgactcctgagaactgattg |
117 |
Q |
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| T |
26640773 |
tgttgattcccaagctttgaggtatgcctcctgagaactgattg |
26640816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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