View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11777_low_9 (Length: 210)
Name: NF11777_low_9
Description: NF11777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11777_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 24729268 - 24729462
Alignment:
| Q |
1 |
gaagggcattacttgagtgcatcagctctattgtgggccagcacaaagaatgatagcctgaacgagaaaatgtcggctcttgtttccggtttgtccgcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24729268 |
gaagggcattacttgagtgcatcagctctaatgtgggccagcacaaagaatgataacctgaacgagaaaatgtcggctcttgtttccggtttgtccgcct |
24729367 |
T |
|
| Q |
101 |
gtcaggaaaaaattggcacgggatatctgtcttcttttccaaccgagctttttgatcgagtagaagctcttcaatatgcatgggctccttattat |
195 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24729368 |
gtcaggaaaaaattggaacgggatatctgtctgcttttccaaccgagctttttgatcgagtagaagctcttcaatatgcatgggctccttattat |
24729462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 24720595 - 24720788
Alignment:
| Q |
1 |
gaagggcattacttgagtgcatcagctctattgtgggccagcacaaagaatgatagcctgaacgagaaaatgtcggctcttgtttccggtttgtccgcct |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||| | |||||||||||||||| || ||| | |||| || |||||||||||||||||||||||| ||||||||| |
|
|
| T |
24720595 |
gaagggcattacttaagtgcaacagctcaaatgtgggccagcacaaacaacaatatcgtgaaggataaaatgtcggctcttgtttccggtctgtccgcct |
24720694 |
T |
|
| Q |
101 |
gtcaggaaaaaattggcacgggatatctgtcttcttttccaaccgagctttttgatcgagtagaagctcttcaatatgcatgggctccttatta |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||| | ||| |||| |||||||||||||||| ||||| |
|
|
| T |
24720695 |
gtcaggaaaaaattggaacgggatatctgtctgcatttccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatatta |
24720788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 24746842 - 24747029
Alignment:
| Q |
8 |
attacttgagtgcatcagctctattgtgggccagcacaaagaatgatagcctgaacgagaaaatgtcggctcttgtttccggtttgtccgcctgtcagga |
107 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
24746842 |
attacttgagtgcatcagctcaaatgtaggccagcacaaagatcaatagcctgaacaagaaaatgttggctcttgttgccggtttgtctgcctgtcagga |
24746941 |
T |
|
| Q |
108 |
aaaaattggcacgggatatctgtcttcttttccaaccgagctttttgatcgagtagaagctcttcaatatgcatgggctccttattat |
195 |
Q |
| |
|
||||||||| ||||||||| ||| | | ||||||||||| ||||| ||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
24746942 |
aaaaattggaacgggatatatgtatgcgtttccaaccgaattttttaatcgaattgaagctcttcaatacgcatgggctccttattat |
24747029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 24689688 - 24689845
Alignment:
| Q |
1 |
gaagggcattacttgagtgcatcagctctattgtgggccagcacaaagaatgatagcctgaacgagaaaatgtcggctcttgtttccggtttgtccgcct |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
24689688 |
gaagggcattacctgagtgcatcagcgctaatgtgggccagcacaaagaacgatagcctgaaggagaaaatgtcggctcttgttgccggtctatccgcct |
24689787 |
T |
|
| Q |
101 |
gtcaggaaaaaattggcacgggatatctgtcttcttttccaaccgagctttttgatcg |
158 |
Q |
| |
|
|||| ||||||||||| || |||||||| ||| | ||||| | ||| |||||||||| |
|
|
| T |
24689788 |
gtcaagaaaaaattggaacaggatatctctctgcatttccgccagagttttttgatcg |
24689845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University