View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_10 (Length: 549)
Name: NF11778_high_10
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Original strand, 42838020 - 42838533
Alignment:
| Q |
19 |
agctgccaagttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagca |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42838020 |
agctgccaagttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagactgtcgacgccggactggttcctttatagca |
42838119 |
T |
|
| Q |
119 |
tgtaataagcttcattttagacgaatcattgctcttcatactgacattaatttgggagactgtccttttcttcgtacttgccggcacatgaacacatgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838120 |
tgtaataagcttcattttagacgaatcattgctcttcatactgacattaatttgggagactgtccttttcttcgtacttgccggcacatgaacacatgta |
42838219 |
T |
|
| Q |
219 |
aatatgttcattatgaggaagaccctacacctgatttgcctccaacaatgatgcgtgctcctcctcctcctctcaaaccactaaagcagcagcgtgctga |
318 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838220 |
aatatgttcactatgaggaagaccctacacctgatttgcctccaacaatgatgtgtgctcctcctcctcctctcaaaccactaaagcagcagcgtgctga |
42838319 |
T |
|
| Q |
319 |
gtattgttctgaagcggaactaggccaatcacaatggatcaactgtgatatacgtaactttagaatggatatattaggtaagtttggagtaataatggct |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838320 |
gtattgttctgaagcggaactaggccaaccacaatggatcaactgtgatatacgtaactttagaatggatatattaggtaagtttggagtaataatggct |
42838419 |
T |
|
| Q |
419 |
gatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccctgctctgcaaactcatgggctta |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838420 |
gatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccctgctctgcaaactcatgggctta |
42838519 |
T |
|
| Q |
519 |
tttttctatgggtc |
532 |
Q |
| |
|
|||||||||||||| |
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| T |
42838520 |
tttttctatgggtc |
42838533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 212 - 532
Target Start/End: Complemental strand, 43913369 - 43913049
Alignment:
| Q |
212 |
acatgtaaatatgttcattatgaggaagaccctacacctgatttgcctccaacaatgatgcgtgctcctcctcctcctctcaaaccactaaagcagcagc |
311 |
Q |
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||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| | |||||| | ||||||||| |||||||||||| ||||||| |
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| T |
43913369 |
acatgtaaatatgttcactatgagtatgaccctacacctgatttgcctccaacaatgacgggtgctcttactcctcctcccaaaccactaaaacagcagc |
43913270 |
T |
|
| Q |
312 |
gtgctgagtattgttctgaagcggaactaggccaatcacaatggatcaactgtgatatacgtaactttagaatggatatattaggtaagtttggagtaat |
411 |
Q |
| |
|
||||||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
43913269 |
gtgctgagtattgttctgaagtggaacttggtgaaccacaatggatcaactgtgatatacgtaactttagaatggacatattaggtaagtttggagtaat |
43913170 |
T |
|
| Q |
412 |
aatggctgatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccctgctctgcaaactcat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43913169 |
aatggctgatccaccgtgggacattcacatggagcttccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccctgctctgcaaactcac |
43913070 |
T |
|
| Q |
512 |
gggcttatttttctatgggtc |
532 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
43913069 |
gggcttatttttctatgggtc |
43913049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 43913848 - 43913748
Alignment:
| Q |
27 |
agttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataa |
126 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||| |||| ||| ||||||||| ||||||||||||| |
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|
| T |
43913848 |
agttcaaaactaaaggtggttctcaggtgaaacaatattgtgacttactgacaaaagaagattgtcggcgccagaccggttcctttgtagcatgtaataa |
43913749 |
T |
|
| Q |
127 |
g |
127 |
Q |
| |
|
| |
|
|
| T |
43913748 |
g |
43913748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 43913552 - 43913471
Alignment:
| Q |
129 |
ttcattttagacgaatcattgctcttcatactgacattaatttgggagactgtccttttcttcgtacttgccggcacatgaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
43913552 |
ttcattttagacgaatcattgctcttcacactgacattaatctgggagactgttcttttctagatacttgccggcacatgaa |
43913471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 377 - 509
Target Start/End: Original strand, 8624149 - 8624280
Alignment:
| Q |
377 |
tttagaatggatatattaggtaagtttggagtaataatggctgatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatgaaa |
476 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||||||| |
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| T |
8624149 |
tttagaatggacgaattaggtaagtttggagtaataatggctgatccaccatgggacattcacattgagctgcc-tatggaacaattgccgatgatgaaa |
8624247 |
T |
|
| Q |
477 |
tgcgcactcttaatgtccctgctctgcaaactc |
509 |
Q |
| |
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||||||||| ||||||||||||| ||||||||| |
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| T |
8624248 |
tgcgcactcctaatgtccctgctgtgcaaactc |
8624280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 427 - 529
Target Start/End: Complemental strand, 8634861 - 8634760
Alignment:
| Q |
427 |
gtgggacattcacatggagctgccttatggaacaatggcggatgatgaaatgcgcactcttaatgtccctgctctgcaaactcatgggcttatttttcta |
526 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||| || ||||| ||| ||| |||||||||||||| |
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| T |
8634861 |
gtgggacattcacatggagttgccttatggaacaatgactgatgatgaaatgcgcgctcttaatgt-ccggctctataaatacattggcttatttttcta |
8634763 |
T |
|
| Q |
527 |
tgg |
529 |
Q |
| |
|
||| |
|
|
| T |
8634762 |
tgg |
8634760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 8635122 - 8635071
Alignment:
| Q |
129 |
ttcattttagacgaatcattgctcttcatactgacattaatttgggagactg |
180 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||| ||| |||||||| |
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|
| T |
8635122 |
ttcattttagacgaatcatttctcttcatactggctttagtttaggagactg |
8635071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 8623658 - 8623758
Alignment:
| Q |
27 |
agttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataa |
126 |
Q |
| |
|
||||||||||||||| ||| | |||| |||| | | | ||||||| || | ||||||| || |||||||||||| ||||||||| |||||||| |||| |
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|
| T |
8623658 |
agttcaaaactaaagatggatatcaggtgaggcaacactgtgactgactgatgaaagaagtttatcgacgccggaccggttcctttgtagcatgtgataa |
8623757 |
T |
|
| Q |
127 |
g |
127 |
Q |
| |
|
| |
|
|
| T |
8623758 |
g |
8623758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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