View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_high_13 (Length: 497)
Name: NF11778_high_13
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 266 - 477
Target Start/End: Original strand, 20784099 - 20784311
Alignment:
| Q |
266 |
gttcacaagatttttcaaaaaattgtttttgagaaaaacatgctatgtatcaaaacaatttgcgtgggtat-ggatacaaaactttattgtatcgaaata |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | |
|
|
| T |
20784099 |
gttcacaagatttttcaaaaaattgtttttgagaaaaacatgctatgtatcaaaacaatttgtgtgggtatcggatacaaaactttattgtatcgaaaca |
20784198 |
T |
|
| Q |
365 |
gagatgacttgtattgatacattcattttagtatagaattcattgaaaagtcatgcaatacacgaaaacgggaagaaaccttgatgccttgaaaatccat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20784199 |
gagatgacttgtattgatacattcatttttgtatagaattcattgaaaagtcatgcaaaacacgaaaacgggaagaaaccttgatgccttgaaaatccac |
20784298 |
T |
|
| Q |
465 |
ctgaattagataa |
477 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
20784299 |
atgaactagataa |
20784311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 20783926 - 20784099
Alignment:
| Q |
1 |
tgaaagagcatgtgaaaaagtgtttgtgtttcttattttgcagaaatgaataaatgttcccttttataagtgatttttgtaatgagtaaaaataggaaag |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20783926 |
tgaaagagaatgtgaaaaagtgt--gtgtttcttgttttgaagaaatgaataaatgttcc-ttttataagtgatttttgtaatgagtaaaaataggaaag |
20784022 |
T |
|
| Q |
101 |
tttaattagnnnnnnntaacaaactttgttttctgaaaaatgagatttctgcatgtttgtatcgatacaagatttaag |
178 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
20784023 |
tttaattag-aaaaaataacaaactttgttttctgaaaattgagatttctccatgtttgtatcgaaacaagatttaag |
20784099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 481
Target Start/End: Original strand, 155121 - 155213
Alignment:
| Q |
390 |
ttttagtatagaattc-attgaaaagtcatgcaatacacgaaaacgggaagaaaccttgatgccttgaaaatccatctgaattagataatttt |
481 |
Q |
| |
|
||||||||| |||||| ||| |||||||||| || || || | |||||||| || ||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
155121 |
ttttagtatggaattctattaaaaagtcatgaaaaccattaagatgggaagaatccatgaagccgtgaaaatccatccgaattagataatttt |
155213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University