View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_15 (Length: 495)
Name: NF11778_high_15
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 81 - 479
Target Start/End: Original strand, 31820007 - 31820404
Alignment:
| Q |
81 |
tcatttagtgaagcattcacatctgatcagagaccttttagtttgaattcgcagatggtaacttcaaatgcactagcttttcaacaaatgtggttttctc |
180 |
Q |
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| T |
31820007 |
tcatttagtgaagcattcacgtctgatcagagaccttttagtttgaattcgcagatggtaacttcaaatgcactagcttttcaacaaatgtggttttctc |
31820106 |
T |
|
| Q |
181 |
aaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatgtgatggagaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820107 |
aaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatgtgatggagaa |
31820206 |
T |
|
| Q |
281 |
acataagattgatgtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaattcaattcccacttt |
380 |
Q |
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| T |
31820207 |
acataagattgatgtcatacatgccaacatcttgtgcaataataatgcaaagagctgcatgatccaagcccatgtaagtttcaaattcaattcccacttt |
31820306 |
T |
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| Q |
381 |
atcgtgcattttgttttcttatattataccagcacttgtggagtaatttagaggaatctacgtgaatttcaatcaatagtatagagtaggtaagaaagt |
479 |
Q |
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| T |
31820307 |
atcgtgcattttgttttcttatattataccagcacttgtggagtaatttaga-gaatctaagggaatttcaaccaatagcatagagtaggtaagaaagt |
31820404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 365
Target Start/End: Original strand, 33485659 - 33485853
Alignment:
| Q |
171 |
tggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatg |
270 |
Q |
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| T |
33485659 |
tggtcttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgttcaactaagaagcctggtctcttgaccacaattgctttgg |
33485758 |
T |
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| Q |
271 |
tgatggagaaacataagattgatgtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaa |
365 |
Q |
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| T |
33485759 |
tgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33485853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 365
Target Start/End: Original strand, 33498870 - 33499064
Alignment:
| Q |
171 |
tggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatg |
270 |
Q |
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|||| ||||||||||||| || ||||| || || | |||||||||||||||||| | ||||||||||||| | | ||||| |||||| || | |
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| T |
33498870 |
tggtcttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgttcaactaagaagcctggtctcttgaccacaattgctttgg |
33498969 |
T |
|
| Q |
271 |
tgatggagaaacataagattgatgtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaa |
365 |
Q |
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| T |
33498970 |
tgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33499064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 156 - 358
Target Start/End: Complemental strand, 12079498 - 12079296
Alignment:
| Q |
156 |
gcttttcaacaaatgtggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttga |
255 |
Q |
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|||||| | ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| || | |||||| |
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| T |
12079498 |
gcttttgatcaaatgttgttttctctaaatgttacctttagtgtttgcggagatgaagcacaattttgcatatactcaaccaagagaccagacatgttga |
12079399 |
T |
|
| Q |
256 |
caacaattttttatgtgatggagaaacataagattgatgtcatacatg-ccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatg |
354 |
Q |
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||||| |||||||| |||||||||||||||||||| |||||| ||| ||||||||||| ||||| ||||||| || ||||||||||| |||||||||| |
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| T |
12079398 |
tcacaatcttttatgtaatggagaaacataagattgaagtcatatatgtccaacatcttgcgcaatgataatgg-aacagctgcatgattcaagcccatg |
12079300 |
T |
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| Q |
355 |
taag |
358 |
Q |
| |
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|||| |
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|
| T |
12079299 |
taag |
12079296 |
T |
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