View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_high_17 (Length: 479)
Name: NF11778_high_17
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 3 - 463
Target Start/End: Complemental strand, 40677046 - 40676586
Alignment:
| Q |
3 |
aaatgaaaataggtaaagagtagagagtagaagaaaccttagatttttcaaaccccaccagaggcaataaaaatatttttggaagaatcttgaggaagag |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40677046 |
aaatcaaaataggtaaagagtagagagtagaagaaaccttagatttttcaaaccccaccagaggcaataaaaatatttttggaagaatcttgaggaagag |
40676947 |
T |
|
| Q |
103 |
acgtgatcagtaaaagcatcagcaaacattccaaactgaaagtgatttttatcattgagtgcatcacaagctgtgaggactctagtgcgtctgaaccaaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40676946 |
acgtgatcagtaaaagcatcagcaaacattccaaactgaaagtgatttttatcctggaatgcatcacaagctgtgaggactctagtgcgtctgaaccaaa |
40676847 |
T |
|
| Q |
203 |
cttgacgttcattattaagaagtgtggtacaatcaagaaaagaaggatcacaagaaggagaatgtgttctgttcatttccttcttgcacattattctcca |
302 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40676846 |
cttgacgttcattattaacaagtgtgctacaatcaagaaaagaaggatcacaagaaggagaatgtgttctgttcatttccttcttgcacattattctcca |
40676747 |
T |
|
| Q |
303 |
acactcatattgtctttgaatagatgacacataccatgttgctcctaaaacctgcactgacaaacacagcacataacacacaagttaactattatcaaaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40676746 |
acactcatattgtctttgaatagatgacacataccatgttgctcctaaaacctgcactgacaaacacaacacataacacacaagttaactattatcaaaa |
40676647 |
T |
|
| Q |
403 |
cattgtagtaattaaatttgatactgttaaataattacatggctggccagcatgtagaaac |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40676646 |
cattgtagtaattaaatttgatactgttaaataattacatggctggccagcatgtagaaac |
40676586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University