View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_19 (Length: 447)
Name: NF11778_high_19
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 35629989 - 35630272
Alignment:
| Q |
1 |
attatatcattagagatcattgactatcatgtattatttacagaaacgcttatactaactaagtaaaacaaatcaactgatacgctataatgctttattc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35629989 |
attatatcattagagatcattggctatcatgtattatttacagaaacgcttatactaactaagtaaaacaaatcaactgatacgctataatgctttattc |
35630088 |
T |
|
| Q |
101 |
ataaaacttaggtgaaatcaagattaaaatacagagatacttacggctgatgcattaaaaatacgggctccatcaatgtgaagcttcaatccgtgcttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35630089 |
ataaaacttaggtgaaatcaagattaaaatacagatttacttacagctgatgcattaaaaatacgggctccatcaatgtgaagcttcaatccgtgcttct |
35630188 |
T |
|
| Q |
201 |
tagcaacctctccaactctatctgtgtattcaactgagagacatcttccacccgagctgcattgaggaaatttatcagccgtaa |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35630189 |
tagcaacctctccaactctatctgtgtattcaactgagagacatcttccacccgagctgcattgaggaaatttatcagccgtaa |
35630272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 282 - 431
Target Start/End: Original strand, 35630347 - 35630499
Alignment:
| Q |
282 |
taaaaagtgaaacagaacaacaac--aaaaactaaaa-ttgcttactttgcatgactgttttccaagcaaataagcctcgttgatggaaacattagctcc |
378 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35630347 |
taaaaagtgaaacagaacaacaaacaaaaaactaaaaattgcttactttgcatgactgttttccaagcaaataagcctcgttgatggaaacattagctcc |
35630446 |
T |
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| Q |
379 |
cccctaggatctctaatggcagcctcaatcaaatcaatgtctatagttccatc |
431 |
Q |
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| T |
35630447 |
cccctaggatctctaatggcagcctcaatcaaatcaatgtctatagttccatc |
35630499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 147 - 270
Target Start/End: Complemental strand, 47827430 - 47827307
Alignment:
| Q |
147 |
ctgatgcattaaaaatacgggctccatcaatgtgaagcttcaatccgtgcttcttagcaacctctccaactctatctgtgtattcaactgagagacatct |
246 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| ||| |||| ||||||||| ||||||||||| ||||| |||||||| || || ||||| |
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| T |
47827430 |
ctgatgcattaaatatacgggctccatcgatgtgaagcttcagtccatgctgcttagcaacttctccaactctctctgtatattcaaccgaaaggcatct |
47827331 |
T |
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| Q |
247 |
tccacccgagctgcattgaggaaa |
270 |
Q |
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||||| | |||||||| |||||| |
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| T |
47827330 |
accaccagtgctgcatttaggaaa |
47827307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 432
Target Start/End: Complemental strand, 47826822 - 47826705
Alignment:
| Q |
315 |
aattgcttactttgcatgactgttttccaagcaaataagcctcgttgatggaaacattagctcccccctaggatctctaatggcagcctcaatcaaatca |
414 |
Q |
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||||||||||||| ||||| |||||||| ||||| ||||| || | |||| | | |||||||| | ||||||||||| || ||||||||||||||| |
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| T |
47826822 |
aattgcttactttccatgagaattttccaaacaaatgagccttgtggttggataaacaagctccccttttggatctctaattgccgcctcaatcaaatca |
47826723 |
T |
|
| Q |
415 |
atgtctatagttccatct |
432 |
Q |
| |
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|| || || ||||||||| |
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| T |
47826722 |
atatccatggttccatct |
47826705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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