View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_high_2 (Length: 964)

Name: NF11778_high_2
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_high_2
NF11778_high_2
[»] chr3 (1 HSPs)
chr3 (1-947)||(37315605-37316551)
[»] chr5 (1 HSPs)
chr5 (157-450)||(19206901-19207188)
[»] chr1 (14 HSPs)
chr1 (641-799)||(16175038-16175196)
chr1 (641-799)||(16184166-16184324)
chr1 (641-799)||(16223556-16223714)
chr1 (641-793)||(33109266-33109418)
chr1 (641-792)||(33115301-33115452)
chr1 (635-781)||(30615821-30615967)
chr1 (635-792)||(30620561-30620718)
chr1 (497-543)||(16175294-16175340)
chr1 (473-543)||(33115133-33115203)
chr1 (269-378)||(16223184-16223293)
chr1 (290-379)||(30620974-30621063)
chr1 (302-378)||(9700035-9700111)
chr1 (335-378)||(16183860-16183903)
chr1 (650-771)||(9699447-9699568)
[»] chr7 (4 HSPs)
chr7 (278-375)||(38883811-38883908)
chr7 (637-785)||(38893362-38893510)
chr7 (278-415)||(38893003-38893140)
chr7 (434-528)||(38883967-38884061)
[»] chr4 (1 HSPs)
chr4 (639-787)||(32666895-32667043)


Alignment Details
Target: chr3 (Bit Score: 890; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 890; E-Value: 0
Query Start/End: Original strand, 1 - 947
Target Start/End: Complemental strand, 37316551 - 37315605
Alignment:
Q  1 gagggctttgacaagtccaaaatggttctagcgaatagggcttttcccactaactaacttatagcgtttattcatgagtttgtgattttagtaaacttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316551 gagggctttgacaagtccaaaatggttctagcgaatagggcttttccaactaactaacttatagcgtttattcatgagtttgtgattttagtaaacttca 37316452  T
Q  101 acaaaaagtcacttgatagcgtggtactgaaacacctatataatactaacttgttattccttcttctgccagaattatagtcaccactaattggtctttg 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316451 acaaaaagtcacttgatagcgtggcactgaaacacctatataatactaacttgttattccttcttctgccagaattatagtcaccactaattggtctttg 37316352  T
Q  201 gagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactaggagttctaactgcccttgatgcagccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316351 gagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactaggagttctaactgcccttgatgcagccaa 37316252  T
Q  301 aacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcataccaaatgttaccaagttactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316251 aacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcataccaaatgttaccaagttactt 37316152  T
Q  401 ggaagaatatattacacacacccaggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316151 ggaagaatatattacacacacccaggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctag 37316052  T
Q  501 caggccaacttttctttggttggcttggggacaaaatgggaagnnnnnnngtttatggtctaactcttgcccttatggtattctcttctcttgcttctgg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316051 caggccaacttttctttggttggcttggggacaaaatgggaagaaaaaaagtttatggtctaactcttgcccttatggtattctcttctcttgcttctgg 37315952  T
Q  601 cctttcttttggtcactcagcaaagggtacaattggaactctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagct 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  37315951 cctttcttttggtcactcagcaaagggtacaattggaactctttgtttctttagattctggctaggttttggtattggtggtgattaccctctttcagct 37315852  T
Q  701 actattatgtctgaatatgctaacaaaaagacccgtggcgcgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtggaattgttt 800  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37315851 actattatgtctgaatatgccaacaaaaagactcgtggcgcgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtggaattgttt 37315752  T
Q  801 ctcttgtagtttcaactgcttttgatcatgcttttaaggctccgccttataaagttgacgctgcagcttcactcgtacccgaagctgattatgtttggag 900  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  37315751 ctcttgtagtttcaactgcttttgatcatgcttttaaggctccaccttataaagttgacgctgcagcttcacttgtaccagaagctgattatgtttggag 37315652  T
Q  901 aatcattctcatgtttggtgctgttcctgctggtttaacttactatt 947  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37315651 aatcattctcatgtttggtgctgttcctgctggtttaacttactatt 37315605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 157 - 450
Target Start/End: Original strand, 19206901 - 19207188
Alignment:
Q  157 ttccttcttctgccagaattatagtcaccactaattggtctttggagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatg 256  Q
    ||||||||||| ||||||  |||||||||||||    || ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||    
T  19206901 ttccttcttctaccagaac-atagtcaccacta----gtgtttggagcacactataaccaaagactcaattggtcactccaccttcaaaatcta-ccttg 19206994  T
Q  257 gctcgtgaacaactaggagttctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacag 356  Q
    |||| |||||| ||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  19206995 gctcatgaacagctaggagttctaacttctcttcatgcagccaaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacag 19207094  T
Q  357 atgcatatgaccttttctgcataccaaatgttaccaagttacttggaagaatatattacacacacccaggtgcactcaagcctggaactttgcc 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  19207095 atgcatatgaccttttctgcataccaaatgttaccaagttacttggaagaatatactacacacacccagatgcactcaagcctggaactttgcc 19207188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 641 - 799
Target Start/End: Complemental strand, 16175196 - 16175038
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagacccgtggcg 740  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||  | || |    
T  16175196 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaatatgctaacaaaaaaactagaggtg 16175097  T
Q  741 cgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtggaattgtt 799  Q
    | ||||| ||| | |||||||| |||||||| ||||| || || | |||||||||||||    
T  16175096 catttattgctgctgtttttgccatgcaaggttttggtatcttaggtggtggaattgtt 16175038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 641 - 799
Target Start/End: Original strand, 16184166 - 16184324
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagacccgtggcg 740  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||  | || |    
T  16184166 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaatatgctaacaaaaaaactagaggtg 16184265  T
Q  741 cgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtggaattgtt 799  Q
    | ||||| ||| | |||||||| |||||||| ||||| || || | |||||||||||||    
T  16184266 catttattgctgctgtttttgccatgcaaggttttggtatcttaggtggtggaattgtt 16184324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 641 - 799
Target Start/End: Original strand, 16223556 - 16223714
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagacccgtggcg 740  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||  | || |    
T  16223556 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaatatgctaacaaaaaaactagaggtg 16223655  T
Q  741 cgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtggaattgtt 799  Q
    | ||||| ||| | |||||||| |||||||| ||||| || || | |||||||||||||    
T  16223656 catttattgctgctgtttttgccatgcaaggttttggtatcttaggtggtggaattgtt 16223714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 641 - 793
Target Start/End: Original strand, 33109266 - 33109418
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagacccgtggcg 740  Q
    ||||||||||| || |||||||| |||||||| || |||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| || || |    
T  33109266 ctttgtttcttcaggttttggcttggttttggaattggtggtgattaccctctttctgctacaattatgtctgagtatgcgaacaagaagacgcgaggag 33109365  T
Q  741 cgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtgga 793  Q
    | ||||| ||| | || |||||||||||||| ||||||||  |||||||||||    
T  33109366 cttttatcgctgcagtgtttgctatgcaaggatttggaatcatggctggtgga 33109418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 641 - 792
Target Start/End: Original strand, 33115301 - 33115452
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagacccgtggcg 740  Q
    ||||||||||| || || ||||| || ||||| || || |||||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |    
T  33115301 ctttgtttcttcaggttctggcttggatttggaattggcggtgattaccctctttcagctactatcatgtctgagtatgcaaataaaaagactcgtggtg 33115400  T
Q  741 cgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtgg 792  Q
    | ||||||||  | ||||| ||||||||||| |||||||||||| |||||||    
T  33115401 catttatagcggctgttttcgctatgcaaggttttggaattttgtctggtgg 33115452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 635 - 781
Target Start/End: Complemental strand, 30615967 - 30615821
Alignment:
Q  635 ggaactctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagaccc 734  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||  | |||||||| || |    
T  30615967 ggaactctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctgaatactcaaacaaaaaaacac 30615868  T
Q  735 gtggcgcgtttatagcttcggtttttgctatgcaagggtttggaatt 781  Q
    |||| |||||| ||||| | |||||||||||||| || |||||||||    
T  30615867 gtggggcgtttgtagctgcagtttttgctatgcagggttttggaatt 30615821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 635 - 792
Target Start/End: Complemental strand, 30620718 - 30620561
Alignment:
Q  635 ggaactctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagaccc 734  Q
    ||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||||||||||  | ||||||||||| |    
T  30620718 ggaactctttgcttcttcagattctggcttggtttcggtattggtggagattatccactttctgcaacaattatgtctgaatactcgaacaaaaagacac 30620619  T
Q  735 gtggcgcgtttatagcttcggtttttgctatgcaagggtttggaattttggctggtgg 792  Q
    |||| |||||||||||| | |||||||||||||| || ||||||||||| || |||||    
T  30620618 gtggtgcgtttatagctgcagtttttgctatgcagggttttggaattttagcaggtgg 30620561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 16175340 - 16175294
Alignment:
Q  497 ctagcaggccaacttttctttggttggcttggggacaaaatgggaag 543  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||    
T  16175340 ctagcaggccaattattctttggttggcttggggacaaaatgggaag 16175294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 543
Target Start/End: Original strand, 33115133 - 33115203
Alignment:
Q  473 aatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaag 543  Q
    |||||||||||| || ||||  | || ||||| ||||||||||||||||||||||| ||||||||||||||    
T  33115133 aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaag 33115203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 16223184 - 16223293
Alignment:
Q  269 ctaggagttctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgacc 368  Q
    |||||||| |||| ||| |||||||  ||||| ||||||| ||| || |||||  | ||  | |||||||| |||||||||||||| ||||||||||| |    
T  16223184 ctaggagtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatc 16223283  T
Q  369 ttttctgcat 378  Q
    ||||||||||    
T  16223284 ttttctgcat 16223293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 30621063 - 30620974
Alignment:
Q  290 gatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcata 379  Q
    |||| ||| |||||||||||||||||||||||||| ||  | || ||||| ||||| |||||||| |||||||| || || |||||||||    
T  30621063 gatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 30620974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 378
Target Start/End: Complemental strand, 9700111 - 9700035
Alignment:
Q  302 acacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcat 378  Q
    ||||||||||||||| | ||||| ||  |||||||||| |||||||||||||| ||||| ||||| || ||||||||    
T  9700111 acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctgcat 9700035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 16183860 - 16183903
Alignment:
Q  335 gctggtatgggattcttcacagatgcatatgaccttttctgcat 378  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||    
T  16183860 gctggaatgggattcttcactgatgcatatgatcttttctgcat 16183903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 771
Target Start/End: Complemental strand, 9699568 - 9699447
Alignment:
Q  650 tttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagacccgtggcgcgtttatag 749  Q
    ||||| |||||||| || |||||||| ||||| || |||||| | ||||| || || ||||||||||| || ||||||| ||| || ||||| || ||||    
T  9699568 tttaggttttggcttggatttggtattggtggagactaccctttatcagcaaccatcatgtctgaatacgccaacaaaaggacacgaggcgctttcatag 9699469  T
Q  750 cttcggtttttgctatgcaagg 771  Q
    |  | ||||| || ||||||||    
T  9699468 cagcagttttcgcaatgcaagg 9699447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 278 - 375
Target Start/End: Original strand, 38883811 - 38883908
Alignment:
Q  278 ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctg 375  Q
    |||| ||| |||||||  || ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| ||||| || |||||    
T  38883811 ctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg 38883908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 637 - 785
Target Start/End: Original strand, 38893362 - 38893510
Alignment:
Q  637 aactctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagacccgt 736  Q
    ||||||||| |||||  | |||||||| || |||||||| ||||| |||||||| ||||| |||||||| ||||| || ||| |||| || ||||| |||    
T  38893362 aactctttgcttcttccgtttttggcttgggtttggtattggtggagattacccgctttcggctactataatgtcagagtattctaataagaagactcgt 38893461  T
Q  737 ggcgcgtttatagcttcggtttttgctatgcaagggtttggaattttgg 785  Q
    || || || || ||| | || ||||| ||||| ||||||||||||||||    
T  38893462 ggtgccttcattgctgcagtctttgccatgcaggggtttggaattttgg 38893510  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 415
Target Start/End: Original strand, 38893003 - 38893140
Alignment:
Q  278 ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgca 377  Q
    |||| ||| |||||||  || ||||| |||||||| || |||||||| ||||| |||||||| ||||||||||| || ||||| ||||| || |||||||    
T  38893003 ctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgatctgttctgca 38893102  T
Q  378 taccaaatgttaccaagttacttggaagaatatattac 415  Q
    || |   |||||||||||| || ||| | |||||||||    
T  38893103 tatcccttgttaccaagttgctgggacgcatatattac 38893140  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 434 - 528
Target Start/End: Original strand, 38883967 - 38884061
Alignment:
Q  434 aagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttgg 528  Q
    ||||| || || |||||||| ||||||||||| || || |||||||| ||| ||||||| || ||  |||| |||||||||||||| ||||||||    
T  38883967 aagcccggtacattgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttgg 38884061  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 639 - 787
Target Start/End: Complemental strand, 32667043 - 32666895
Alignment:
Q  639 ctctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaagacccgtgg 738  Q
    ||||| ||||||||||||| |   ||||  |||| || ||||||||||| ||| | ||  |||| ||||||||||| | |||||| |||| |||  | ||    
T  32667043 ctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgctaataaaaggacaagagg 32666944  T
Q  739 cgcgtttatagcttcggtttttgctatgcaagggtttggaattttggct 787  Q
      | ||||||||| |||||||| |||||||||||||||| || ||||||    
T  32666943 ttcttttatagctgcggttttttctatgcaagggtttggtatattggct 32666895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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