View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_20 (Length: 441)
Name: NF11778_high_20
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 52158623 - 52159040
Alignment:
| Q |
8 |
caatgatgatgtgttaaatgaaaataagagaagcctagtttctgttttctgattaaacccccactgtggccgctgctaacattaaacagaaattgtctat |
107 |
Q |
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| T |
52158623 |
caatgatgatgtgttaaatgaaaataagagaagcctagtttctgttttctgattaaacccccgctgtggccgctgctaacattaaacagaaattgtctat |
52158722 |
T |
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| Q |
108 |
taactggttttgaaaactcgaagaagtatttgtatgcataaacactaatgttaactccttatgaaatcaacttattcaagtaaacccttaaacatataac |
207 |
Q |
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| T |
52158723 |
taactggtttc-aaaactcgaagaagtatttgtatgcataaacactaatgttaactccttatgaaatcaacttattcaagtaaacccttaaacatataac |
52158821 |
T |
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| Q |
208 |
ctaagctagtgacctctatagcaccgacacttgatgaaggcgggtcctg-tgtccgacatgtgtcaccaacacacgtaattacattgaattatgacattt |
306 |
Q |
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| T |
52158822 |
ctaagctagtgacctctatagcaccgacacttgatgaaggcgggtcctggtgtccgacatgtgtcaccaacacacgtaattacattgaattatgacattt |
52158921 |
T |
|
| Q |
307 |
tctaaaaaattatcagtgtcaatatgtcactatgttcttgcttcatagctaataacacaccctcagaaccaagtaattattacattgctcagaaagtgtt |
406 |
Q |
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| T |
52158922 |
tctaaaaaattatcagtgtcaatatgtcactatgttcttgcttcatagctaataacacaccctcagaaccaagtaattattacattgctcagaaagtgtt |
52159021 |
T |
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| Q |
407 |
acgtaaaataatatatatc |
425 |
Q |
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| T |
52159022 |
acgtaaaataatatatatc |
52159040 |
T |
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Back To:
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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 44066164 - 44066245
Alignment:
| Q |
17 |
tgtgttaaatgaaaataagagaagcctagtttctgttttctgattaaacccccactgtggccgctgctaacattaaacagaa |
98 |
Q |
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| T |
44066164 |
tgtgttaaattaaaataaaagaaacatagtttctgatttctgctcaaacacccgttgtggccgctgataacattaaatagaa |
44066245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 37496746 - 37496702
Alignment:
| Q |
285 |
attacattgaattatgacattttct-aaaaaattatcagtgtcaa |
328 |
Q |
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| T |
37496746 |
attacattgaattatgtcattttctcaaaaaattatcggtgtcaa |
37496702 |
T |
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