View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_27 (Length: 358)
Name: NF11778_high_27
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 35 - 341
Target Start/End: Complemental strand, 30265116 - 30264810
Alignment:
| Q |
35 |
cgaaccatgaatgttagcagaaagagaaattaccattcaatttcatctccatcaccaccaaaaacctcaacacactcttcaataccaatcccacccttag |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30265116 |
cgaaccatgaatgttagcagaaagagaaattaccattcaatttcatctccatcaccaccaaaaacctcaacacactctccaataccaatcccacccttag |
30265017 |
T |
|
| Q |
135 |
gtaaaacaaaaaccctctttgaaataatctccacaaacccatctttaaccgttgaaaaatccctcgaagattctcaaatcaatttaaccccacaagacgt |
234 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30265016 |
gtaaaacaaaaaccctcttcgaaataatctccacaaacccatctttaaccgttgaaaaatccctcgaagattctcaaatcaatttaaccccacaagacgt |
30264917 |
T |
|
| Q |
235 |
tgaaaatgttctcaaactttcttaccggttcccggctcaatcagttaaattcttccgttgggccggtcaccgtattaatcataaccacactccatatgct |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264916 |
tgaaaatgttctcaaactttcttaccggttcccggctcaatcagttaaattcttccgttgggccggtcaccgtattaatcataaccacactccatatgct |
30264817 |
T |
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| Q |
335 |
tggaatt |
341 |
Q |
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||||||| |
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| T |
30264816 |
tggaatt |
30264810 |
T |
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