View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_28 (Length: 358)
Name: NF11778_high_28
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 13718500 - 13718158
Alignment:
| Q |
1 |
tatctataaaaccagaaatgtatgagaatgaaatatcaattttggatttgaggttactacgcgtcttcattgtccagcgtaaagtcatcatccattgtcc |
100 |
Q |
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| T |
13718500 |
tatctataaaaccagaaatgtatgagaatgaaatatcaatttcggatttgaggttactacgcgtcttcattgtccagcgtaaagtcatcatccattgtcc |
13718401 |
T |
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| Q |
101 |
tcattaatggccatttacatctttctatttggttggtgtcagtagagcgaaaagggaaaggataaagggaaaggagggttgaattgtagtggtggtagaa |
200 |
Q |
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| T |
13718400 |
tcattaatgggcatttacatctttctatttggttggtgtcagtagagcgaaaagggaaaggataaagggaaaggacggttgaattgtagtggtggtggaa |
13718301 |
T |
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| Q |
201 |
tatcaccgcaatccaactctccttccttttcttcttttccttttctgtttctccatatgtatcacttctgctggaggtggtttcggccaaattggtttgc |
300 |
Q |
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| T |
13718300 |
tatcaccgcaatccaactctccttcctcttcttcttttccttttctgtttctccatatgtaccacttctgctggaggtggtttcggccaaattggtttgc |
13718201 |
T |
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| Q |
301 |
gcgaattgccatccaaaatatgtttcggacattcagtaaattg |
343 |
Q |
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| T |
13718200 |
acgaattgccatccaaaatatgtttcggacattcagtaaattg |
13718158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 27322387 - 27322275
Alignment:
| Q |
1 |
tatctataaaaccagaaatgtatgagaatgaaatatcaattttggatttgaggttactacgcgtcttcattgtccagcgtaaagtcatcatccattgtcc |
100 |
Q |
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||||||||||| |||||| |||||||| || || ||||||| ||||||||||| ||| || ||||||| |||||||||||| ||||||||| ||| |
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| T |
27322387 |
tatctataaaagcagaaacgtatgagactggaacatcaattccggatttgaggt----acgtgttttcattggtcagcgtaaagtcctcatccattatcc |
27322292 |
T |
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| Q |
101 |
tcattaatggccattta |
117 |
Q |
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| T |
27322291 |
tcgttaatgggcattta |
27322275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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