View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_29 (Length: 350)
Name: NF11778_high_29
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 43818187 - 43818531
Alignment:
| Q |
1 |
gtgtcccgccaatatgcggcacctgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaattcggcgtggataatattag |
100 |
Q |
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| T |
43818187 |
gtgtcccgccaatatgtggcacctgttatttgtttcgcttttttcgtatttatctgcgaccggtacggctttttgtagaattcggcgtggataatattag |
43818286 |
T |
|
| Q |
101 |
ctgattnnnnnnnnnn-----ggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccattgtcgcgttggtatgcctt |
195 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43818287 |
ctgattaaaaaaaaaaaaaaaggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccattgtcgcgttggtatgcctt |
43818386 |
T |
|
| Q |
196 |
ggaacatgttgctattatggtttctattccttattgagcaatgaatttaatttcacaggttgtaggcttttttatggtttctaattctattcctcatgaa |
295 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43818387 |
ggaacatgttgctattgtggtttctattccttattgagcaatgaatttaatttcacaggttgtaggcttttttatggtttctaattctattcctcatgaa |
43818486 |
T |
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| Q |
296 |
aattacatatgcataacgtttagtacttattgtgtttggtctctg |
340 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
43818487 |
aattacatatgcataatgtttattacttattgtgtttggtttctg |
43818531 |
T |
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