View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_30 (Length: 343)
Name: NF11778_high_30
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 44798117 - 44798447
Alignment:
| Q |
17 |
aaatataacaccagcataaagataagaaagatagattaagtttaactttgatgctttattttttaacaagattttcaccaagtaaatgaaattctgttgt |
116 |
Q |
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| T |
44798117 |
aaatataacaccagcataaagataagaaagatagattaagtttaactttgatgatttattttttaacaagattttcaccaagtaaatgaaattctgttta |
44798216 |
T |
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| Q |
117 |
ta-ctaacgctactacaaacaaatttaaaacta---cactgactttatttcagtttaacccctcaatggtcctatgtgaagaatcataactagaaatgta |
212 |
Q |
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| T |
44798217 |
aaactaacgctactacaaacaaatttaaaactactacactgactttatttcagtttaacccctcaatggtcctatgtgaagaatcctaactaaaaatgta |
44798316 |
T |
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| Q |
213 |
atgttttgtttgaatttagaagacacaacaattcaagattaggccaagaaacagattgagtatgtgtatcactctctctccttcatctttaccatgaaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44798317 |
atgttttgtttgaatttagaagacacaacaattcaagattagaacaagaaacagattgagtatgtgtatcactctctctccttcatctttaccatgaaaa |
44798416 |
T |
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| Q |
313 |
caaattcttgaaaacttcatcactcttaatt |
343 |
Q |
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| T |
44798417 |
caaattcttgaaaacttcaccactcttaatt |
44798447 |
T |
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