View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_high_4 (Length: 747)

Name: NF11778_high_4
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_high_4
NF11778_high_4
[»] chr3 (1 HSPs)
chr3 (1-730)||(37315822-37316551)
[»] chr5 (1 HSPs)
chr5 (157-450)||(19206901-19207188)
[»] chr1 (13 HSPs)
chr1 (641-729)||(16175108-16175196)
chr1 (641-729)||(16184166-16184254)
chr1 (641-729)||(16223556-16223644)
chr1 (641-726)||(33109266-33109351)
chr1 (635-717)||(30615885-30615967)
chr1 (641-730)||(33115301-33115390)
chr1 (497-543)||(16175294-16175340)
chr1 (473-543)||(33115133-33115203)
chr1 (269-378)||(16223184-16223293)
chr1 (290-379)||(30620974-30621063)
chr1 (302-378)||(9700035-9700111)
chr1 (635-730)||(30620623-30620718)
chr1 (335-378)||(16183860-16183903)
[»] chr7 (3 HSPs)
chr7 (278-375)||(38883811-38883908)
chr7 (278-415)||(38893003-38893140)
chr7 (434-528)||(38883967-38884061)


Alignment Details
Target: chr3 (Bit Score: 689; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 1 - 730
Target Start/End: Complemental strand, 37316551 - 37315822
Alignment:
Q  1 gagggctttgacaagtccaaaatggttctagcgaatagggcttttcccactaactaacttatagcgtttattcatgagtttgtgattttagtaaacttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316551 gagggctttgacaagtccaaaatggttctagcgaatagggcttttccaactaactaacttatagcgtttattcatgagtttgtgattttagtaaacttca 37316452  T
Q  101 acaaaaagtcacttgatagcgtggtactgaaacacctatataatactaacttgttattccttcttctgccagaattatagtcaccactaattggtctttg 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316451 acaaaaagtcacttgatagcgtggcactgaaacacctatataatactaacttgttattccttcttctgccagaattatagtcaccactaattggtctttg 37316352  T
Q  201 gagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactaggagttctaactgcccttgatgcagccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316351 gagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatggctcgtgaacaactaggagttctaactgcccttgatgcagccaa 37316252  T
Q  301 aacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcataccaaatgttaccaagttactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316251 aacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcataccaaatgttaccaagttactt 37316152  T
Q  401 ggaagaatatattacacacacccaggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316151 ggaagaatatattacacacacccaggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctag 37316052  T
Q  501 caggccaacttttctttggttggcttggggacaaaatgggaagnnnnnnngtttatggtctaactcttgcccttatggtattctcttctcttgcttctgg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316051 caggccaacttttctttggttggcttggggacaaaatgggaagaaaaaaagtttatggtctaactcttgcccttatggtattctcttctcttgcttctgg 37315952  T
Q  601 cctttcttttggtcactcagcaaagggtacaattggaactctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagct 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  37315951 cctttcttttggtcactcagcaaagggtacaattggaactctttgtttctttagattctggctaggttttggtattggtggtgattaccctctttcagct 37315852  T
Q  701 actattatgtctgaatatgctaacaaaaag 730  Q
    |||||||||||||||||||| |||||||||    
T  37315851 actattatgtctgaatatgccaacaaaaag 37315822  T

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Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 157 - 450
Target Start/End: Original strand, 19206901 - 19207188
Alignment:
Q  157 ttccttcttctgccagaattatagtcaccactaattggtctttggagcacactattaccaaagactcaattggtcactctaccttaaaaatctatccatg 256  Q
    ||||||||||| ||||||  |||||||||||||    || ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||    
T  19206901 ttccttcttctaccagaac-atagtcaccacta----gtgtttggagcacactataaccaaagactcaattggtcactccaccttcaaaatcta-ccttg 19206994  T
Q  257 gctcgtgaacaactaggagttctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacag 356  Q
    |||| |||||| ||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  19206995 gctcatgaacagctaggagttctaacttctcttcatgcagccaaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacag 19207094  T
Q  357 atgcatatgaccttttctgcataccaaatgttaccaagttacttggaagaatatattacacacacccaggtgcactcaagcctggaactttgcc 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  19207095 atgcatatgaccttttctgcataccaaatgttaccaagttacttggaagaatatactacacacacccagatgcactcaagcctggaactttgcc 19207188  T

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Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 641 - 729
Target Start/End: Complemental strand, 16175196 - 16175108
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaa 729  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16175196 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaatatgctaacaaaaa 16175108  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 641 - 729
Target Start/End: Original strand, 16184166 - 16184254
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaa 729  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16184166 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaatatgctaacaaaaa 16184254  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 641 - 729
Target Start/End: Original strand, 16223556 - 16223644
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaa 729  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16223556 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaatatgctaacaaaaa 16223644  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 641 - 726
Target Start/End: Original strand, 33109266 - 33109351
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaa 726  Q
    ||||||||||| || |||||||| |||||||| || |||||||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  33109266 ctttgtttcttcaggttttggcttggttttggaattggtggtgattaccctctttctgctacaattatgtctgagtatgcgaacaa 33109351  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 635 - 717
Target Start/End: Complemental strand, 30615967 - 30615885
Alignment:
Q  635 ggaactctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaata 717  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||    
T  30615967 ggaactctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctgaata 30615885  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 641 - 730
Target Start/End: Original strand, 33115301 - 33115390
Alignment:
Q  641 ctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaag 730  Q
    ||||||||||| || || ||||| || ||||| || || |||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  33115301 ctttgtttcttcaggttctggcttggatttggaattggcggtgattaccctctttcagctactatcatgtctgagtatgcaaataaaaag 33115390  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 16175340 - 16175294
Alignment:
Q  497 ctagcaggccaacttttctttggttggcttggggacaaaatgggaag 543  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||    
T  16175340 ctagcaggccaattattctttggttggcttggggacaaaatgggaag 16175294  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 543
Target Start/End: Original strand, 33115133 - 33115203
Alignment:
Q  473 aatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaag 543  Q
    |||||||||||| || ||||  | || ||||| ||||||||||||||||||||||| ||||||||||||||    
T  33115133 aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaag 33115203  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 16223184 - 16223293
Alignment:
Q  269 ctaggagttctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgacc 368  Q
    |||||||| |||| ||| |||||||  ||||| ||||||| ||| || |||||  | ||  | |||||||| |||||||||||||| ||||||||||| |    
T  16223184 ctaggagtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatc 16223283  T
Q  369 ttttctgcat 378  Q
    ||||||||||    
T  16223284 ttttctgcat 16223293  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 30621063 - 30620974
Alignment:
Q  290 gatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcata 379  Q
    |||| ||| |||||||||||||||||||||||||| ||  | || ||||| ||||| |||||||| |||||||| || || |||||||||    
T  30621063 gatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 30620974  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 378
Target Start/End: Complemental strand, 9700111 - 9700035
Alignment:
Q  302 acacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcat 378  Q
    ||||||||||||||| | ||||| ||  |||||||||| |||||||||||||| ||||| ||||| || ||||||||    
T  9700111 acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctgcat 9700035  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 635 - 730
Target Start/End: Complemental strand, 30620718 - 30620623
Alignment:
Q  635 ggaactctttgtttctttagattttggctaggttttggtataggtggtgattaccctctttcagctactattatgtctgaatatgctaacaaaaag 730  Q
    ||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||||||||||  | |||||||||    
T  30620718 ggaactctttgcttcttcagattctggcttggtttcggtattggtggagattatccactttctgcaacaattatgtctgaatactcgaacaaaaag 30620623  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 16183860 - 16183903
Alignment:
Q  335 gctggtatgggattcttcacagatgcatatgaccttttctgcat 378  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||    
T  16183860 gctggaatgggattcttcactgatgcatatgatcttttctgcat 16183903  T

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Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 278 - 375
Target Start/End: Original strand, 38883811 - 38883908
Alignment:
Q  278 ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctg 375  Q
    |||| ||| |||||||  || ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| ||||| || |||||    
T  38883811 ctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg 38883908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 415
Target Start/End: Original strand, 38893003 - 38893140
Alignment:
Q  278 ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgca 377  Q
    |||| ||| |||||||  || ||||| |||||||| || |||||||| ||||| |||||||| ||||||||||| || ||||| ||||| || |||||||    
T  38893003 ctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgatctgttctgca 38893102  T
Q  378 taccaaatgttaccaagttacttggaagaatatattac 415  Q
    || |   |||||||||||| || ||| | |||||||||    
T  38893103 tatcccttgttaccaagttgctgggacgcatatattac 38893140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 528
Target Start/End: Original strand, 38883967 - 38884061
Alignment:
Q  434 aagcctggaactttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttgg 528  Q
    ||||| || || |||||||| ||||||||||| || || |||||||| ||| ||||||| || ||  |||| |||||||||||||| ||||||||    
T  38883967 aagcccggtacattgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttgg 38884061  T

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