View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_43 (Length: 259)
Name: NF11778_high_43
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_43 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 37362189 - 37362447
Alignment:
| Q |
1 |
aggatgataacaattagaatctagataaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagagaaaaggtggaag |
100 |
Q |
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| T |
37362189 |
aggatgataacaattagaatctagataaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagagaaaaggtggaag |
37362288 |
T |
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| Q |
101 |
tgaagttaccttaacatcaagaagtccaagtgcgaaagcactccctttctcaacctcatgttcaaacggtgacagctcctgaacagagttgtttacagcc |
200 |
Q |
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| T |
37362289 |
tgaagttaccttaacatcaagaagtccaagtgcgaaagcgctccctttctcaacctcatgttcaaacggtaacagctcctcaacagaattgttttcagcc |
37362388 |
T |
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| Q |
201 |
agcgattgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgggg |
259 |
Q |
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| T |
37362389 |
ggcgattgaagatgtttaatcaaaatgtgacagagggagaagaagagggaagcatgggg |
37362447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 684184 - 684256
Alignment:
| Q |
97 |
gaagtgaagttaccttaacatcaagaagtccaagtgcgaaagcactccctttctcaacctcatgttcaaacgg |
169 |
Q |
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| T |
684184 |
gaagtgaaattaccttgacagcaagaagtccaagcgcgaaagcactccctttctcaacctcatgttcaaacgg |
684256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 7135603 - 7135542
Alignment:
| Q |
27 |
aaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagag |
88 |
Q |
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| T |
7135603 |
aaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagag |
7135542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 41810456 - 41810404
Alignment:
| Q |
206 |
ttgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgggg |
259 |
Q |
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| T |
41810456 |
ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatgggg |
41810404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 31770859 - 31770911
Alignment:
| Q |
206 |
ttgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgggg |
259 |
Q |
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| T |
31770859 |
ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatgggg |
31770911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 14184932 - 14184882
Alignment:
| Q |
206 |
ttgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgg |
257 |
Q |
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| T |
14184932 |
ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatgg |
14184882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 17831549 - 17831490
Alignment:
| Q |
26 |
taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata |
85 |
Q |
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| T |
17831549 |
taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata |
17831490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 52131054 - 52131002
Alignment:
| Q |
206 |
ttgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgggg |
259 |
Q |
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|||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
52131054 |
ttgatgatgtataatcaaaa-gtgacagagggagaagaagagggaagcatgggg |
52131002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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