View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_49 (Length: 241)
Name: NF11778_high_49
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 10001656 - 10001870
Alignment:
| Q |
9 |
aatagttcttttgattcacgatacgaatctc-aatgctcatagtaaggaggggtaatgtagagcagtaaaatcactaaccttagtttcaggatcattcaa |
107 |
Q |
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| T |
10001656 |
aatagttatttcgattcatgatacgaatctctaatgctcatattaaggaggggtaatgtagagcagtaaaatcactaaccttagtttcaggatcattcaa |
10001755 |
T |
|
| Q |
108 |
ctcaaccaataattctgcaacagtatctttacaaaagccacaactatttccatgaacctgtgaagaaatcgttgcagactcacaaaggtggtacttttca |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10001756 |
ctcaactaataattctgcaacagtatctttacaaaagccacaactatttccatgaacctgtgaagaaatcgttgcagactcacaaaggtggtacttttca |
10001855 |
T |
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| Q |
208 |
cagagttctgcaggc |
222 |
Q |
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||||||||||||||| |
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| T |
10001856 |
cagagttctgcaggc |
10001870 |
T |
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