View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_high_50 (Length: 240)

Name: NF11778_high_50
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_high_50
NF11778_high_50
[»] chr8 (16 HSPs)
chr8 (18-240)||(4891346-4891565)
chr8 (55-240)||(4906050-4906231)
chr8 (52-240)||(4713773-4713958)
chr8 (132-240)||(4777542-4777649)
chr8 (65-226)||(4687946-4688106)
chr8 (77-240)||(4914497-4914656)
chr8 (55-240)||(21440560-21440740)
chr8 (161-224)||(4735777-4735840)
chr8 (55-125)||(4725225-4725295)
chr8 (52-123)||(4744692-4744763)
chr8 (173-224)||(4744793-4744844)
chr8 (187-240)||(4702563-4702616)
chr8 (55-124)||(4926342-4926411)
chr8 (55-128)||(10445502-10445575)
chr8 (55-125)||(4735690-4735764)
chr8 (191-223)||(4995367-4995399)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 4891565 - 4891346
Alignment:
Q  18 gatgggaacggtactgcattttcttttggtattctttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4891565 gatgggaacggtactgcattttcttttggtattctttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgt 4891466  T
Q  118 cacatattaatcactactagtaattattatagttgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggt 217  Q
    ||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4891465 cacatattaatc---actagtaattattgtagttgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagattgtggt 4891369  T
Q  218 ctacctgaaaatttgaactattc 240  Q
    |||||||||||||||||||||||    
T  4891368 ctacctgaaaatttgaactattc 4891346  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 4906231 - 4906050
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaa 154  Q
    ||||| ||| ||||||| ||||||||||||||| |||  |||||   ||||||||||||||||||||| ||  | |||| || | |||||| ||| ||||    
T  4906231 gttttgatacaagctcaggatcaatcaggtttgattaggaatttttctatagctgctttatgtcacatttttgttactagtaattattattgtagctgaa 4906132  T
Q  155 gttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    |||||    |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  4906131 gttat----cttaatttgttcctaaatttatatgtatcaggattcattagcttagactgcggtctacctgaacatttgagctattc 4906050  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 4713773 - 4713958
Alignment:
Q  52 tttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagta-attattatagt 150  Q
    |||||||| ||| ||||||| |||||||||||||||||||| ||||||  |||||||||||| |||||||||||  | |||| || || |||||| ||||    
T  4713773 tttgttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagctgctttctgtcacatatttgttactagtaatatattattgtagt 4713872  T
Q  151 tgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    ||| ||    || |||||||||||| ||||||||||| ||||||||||||||||| |||| ||||| |||||| || || | ||||||||    
T  4713873 tgatgt----taccttaatttgttcttcaatttatatgtatcaggattcattagcatagattgtggcctacctaaagatatcaactattc 4713958  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 4777649 - 4777542
Alignment:
Q  132 tactagtaattattatagttgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaattt 231  Q
    |||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||    
T  4777649 tacttgtaattattatagttgaa-taatttatcttaatttgttcctcaatttatatgtatcaggattcattagcatagattgtggtctacctgaacattt 4777551  T
Q  232 gaactattc 240  Q
    || ||||||    
T  4777550 gagctattc 4777542  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 4687946 - 4688106
Alignment:
Q  65 aagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattat---agttgaagttatat 161  Q
    ||||||| ||||||||||||||| |||| | ||| | ||||| | ||||||||||||||||  | ||||||||||||||||||   ||||||||||||      
T  4687946 aagctcaggatcaatcaggtttggttatgatttttcatatagttactttatgtcacatatttgttactactagtaattattattgtagttgaagttat-- 4688043  T
Q  162 atcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaa 226  Q
      ||||||||||||||| |||||||| | ||||||||||||||| |||| ||||||||| |||||    
T  4688044 --cttaatttgttcctctatttatatgtctcaggattcattagcatagattgtggtctatctgaa 4688106  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 4914656 - 4914497
Alignment:
Q  77 aatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaagttatatatcttaatttgttcc 176  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||||| |  | |||| || | ||| || ||| |||||||||    |||||||||||||    
T  4914656 aatcaggtttgtttatgaatttgtctatacctgctttatgtcacatagttgttactagtaattatttttgtagatgaagttat----cttaatttgttcc 4914561  T
Q  177 tcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    ||||||||||| |||||||||||||||||||||| ||||||| || |||| || |||| |||||    
T  4914560 tcaatttatatgtatcaggattcattagcttagattgtggtcaacatgaagatgtgaaatattc 4914497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 21440740 - 21440560
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaa 154  Q
    ||||| ||| ||||||| ||||||||||||||||||   ||||||  |||| || ||| ||||||||||||  || | | || | ||| || ||| ||||    
T  21440740 gttttgatacaagctcaggatcaatcaggtttgttttcgaatttgtctatacctacttcatgtcacatattgttccc-agtaattatttttgtagctgaa 21440642  T
Q  155 gttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    |||||    |||||||||||| | ||||||||| |||||||||||||||||||||| ||||| | ||||||| ||  |||||||||    
T  21440641 gttat----cttaatttgttcataaatttatatgtatcaggattcattagcttagattgtgggcgacctgaagatgcgaactattc 21440560  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 4735777 - 4735840
Alignment:
Q  161 tatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctg 224  Q
    |||||||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  4735777 tatcttaagtttttcctcaatttatatgtatcaggattcattagcatagattgtggtctacctg 4735840  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 4725225 - 4725295
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatatt 125  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||  ||||||| |||| |||||||||||    
T  4725225 gttttgatacaagctcaagatcaatcaggtttgtttatgaatttgtctatagcttctttctgtcacatatt 4725295  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 4744692 - 4744763
Alignment:
Q  52 tttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacata 123  Q
    |||||||| ||| ||||||| |||||||||||||||||||| ||||||  ||||||| |||| |||||||||    
T  4744692 tttgttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagcttctttctgtcacata 4744763  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 4744793 - 4744844
Alignment:
Q  173 ttcctcaatttatatatatcaggattcattagcttagactgtggtctacctg 224  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||| |||||||    
T  4744793 ttcctcaatttatatgtatcaggattcattagcatagattgtggcctacctg 4744844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 4702563 - 4702616
Alignment:
Q  187 tatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    ||||||||||||||||||||||||||| ||||||||| || || | ||||||||    
T  4702563 tatatcaggattcattagcttagactgcggtctacctaaagatgtcaactattc 4702616  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 4926411 - 4926342
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatat 124  Q
    ||||| ||| ||||||| ||||||||||||| | |||| ||||||  ||||| |||||||||||||||||    
T  4926411 gttttgatacaagctcaggatcaatcaggttgggttattaatttgtatatagttgctttatgtcacatat 4926342  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 10445502 - 10445575
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaat 128  Q
    ||||| ||| ||||||| |||||||||||||||||||| ||||||  ||||||  |||||| ||||||| ||||    
T  10445502 gttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagcatctttatatcacatagtaat 10445575  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 4735690 - 4735764
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttg-ct---tatagctgctttatgtcacatatt 125  Q
    ||||| ||| ||||||| |||||||||||||||||||| |||||| ||   |||||||||||| |||||||||||    
T  4735690 gttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatatatagctgctttctgtcacatatt 4735764  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 4995367 - 4995399
Alignment:
Q  191 tcaggattcattagcttagactgtggtctacct 223  Q
    |||||||||||||||||||| ||||||||||||    
T  4995367 tcaggattcattagcttagattgtggtctacct 4995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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