View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_high_59 (Length: 218)
Name: NF11778_high_59
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 43818107 - 43817925
Alignment:
| Q |
17 |
caaaggaattagagaacattagctaataacagcctctatgcactatcataccacaaaaatcccaactaatcccagccgagcattccaaagcctcaaaaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43818107 |
caaaggaattagagaacattagctaataacagcctctatgcactgtcatcccacaaaaatcccaactaatcccagccgagcattccaaagcctcaaaaac |
43818008 |
T |
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| Q |
117 |
agccccctacacgctccagctgtgcacaccaaactagaacagcaggtattatcacacactagcaaccacacgcaaacagtaag |
199 |
Q |
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| T |
43818007 |
agccccctacacgctccagctgtgcacaccaaaccagaacagcaggtattatcacacaccagcaaccacacgcaaacagtaag |
43817925 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 19873327 - 19873246
Alignment:
| Q |
80 |
aactaatcccagccgagcattccaaagcctcaaaaacagccccctacacgctccagctgtgcacaccaaactagaacagcag |
161 |
Q |
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||||| |||||||||||||| |||||||||| |||||||||||| || ||||| ||||| ||||| || ||||| |||| |
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| T |
19873327 |
aactagtcccagccgagcataccaaagcctcgctaacagccccctaaacactccaattgtgcgcaccacaccagaactgcag |
19873246 |
T |
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