View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_high_8 (Length: 585)

Name: NF11778_high_8
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_high_8
NF11778_high_8
[»] chr7 (19 HSPs)
chr7 (273-449)||(35109647-35109823)
chr7 (273-451)||(38265235-38265413)
chr7 (279-449)||(21577098-21577268)
chr7 (270-446)||(16059356-16059532)
chr7 (273-449)||(34721790-34721966)
chr7 (284-445)||(41151139-41151301)
chr7 (279-446)||(38405157-38405324)
chr7 (272-446)||(18116947-18117121)
chr7 (271-444)||(11216723-11216896)
chr7 (279-449)||(45278414-45278584)
chr7 (311-445)||(12472115-12472249)
chr7 (344-449)||(37095210-37095315)
chr7 (330-449)||(245264-245383)
chr7 (279-446)||(48176362-48176529)
chr7 (355-449)||(28407546-28407636)
chr7 (318-449)||(23028684-23028815)
chr7 (355-445)||(24123021-24123117)
chr7 (407-449)||(39234853-39234895)
chr7 (272-326)||(40038620-40038674)
[»] chr3 (30 HSPs)
chr3 (273-449)||(8400811-8400987)
chr3 (270-449)||(7417751-7417930)
chr3 (279-449)||(35198727-35198897)
chr3 (308-449)||(50823689-50823830)
chr3 (308-449)||(50852030-50852171)
chr3 (272-449)||(22855842-22856019)
chr3 (271-446)||(34824510-34824685)
chr3 (271-449)||(52545275-52545453)
chr3 (282-446)||(55467964-55468129)
chr3 (288-446)||(43334057-43334215)
chr3 (279-413)||(48077977-48078111)
chr3 (346-450)||(22371728-22371832)
chr3 (364-449)||(37330607-37330692)
chr3 (364-456)||(30534895-30534987)
chr3 (344-449)||(29635895-29636001)
chr3 (364-449)||(37454744-37454829)
chr3 (306-443)||(50726003-50726140)
chr3 (306-443)||(50786708-50786845)
chr3 (346-449)||(19872483-19872586)
chr3 (291-445)||(42876189-42876343)
chr3 (377-449)||(25910666-25910738)
chr3 (349-449)||(25589253-25589346)
chr3 (356-446)||(30203657-30203744)
chr3 (289-380)||(5548970-5549061)
chr3 (406-449)||(773666-773709)
chr3 (399-444)||(31297529-31297574)
chr3 (374-449)||(39438829-39438903)
chr3 (402-451)||(358940-358989)
chr3 (377-445)||(14848552-14848620)
chr3 (347-395)||(38724459-38724507)
[»] chr4 (28 HSPs)
chr4 (272-446)||(51066448-51066622)
chr4 (272-446)||(46494401-46494575)
chr4 (272-449)||(7173585-7173762)
chr4 (293-449)||(36192517-36192673)
chr4 (297-449)||(51713965-51714117)
chr4 (272-449)||(39863778-39863955)
chr4 (277-445)||(32139124-32139292)
chr4 (297-449)||(30970384-30970536)
chr4 (272-419)||(8740403-8740550)
chr4 (271-449)||(50905702-50905880)
chr4 (281-446)||(2294719-2294878)
chr4 (346-449)||(29576444-29576547)
chr4 (345-449)||(55231715-55231819)
chr4 (373-449)||(22304091-22304167)
chr4 (355-449)||(676766-676860)
chr4 (332-449)||(2570216-2570333)
chr4 (311-449)||(47626993-47627133)
chr4 (344-446)||(41523424-41523526)
chr4 (355-447)||(51279035-51279127)
chr4 (354-449)||(4080552-4080647)
chr4 (312-420)||(22423371-22423479)
chr4 (327-451)||(50399640-50399764)
chr4 (384-446)||(23084468-23084530)
chr4 (381-445)||(37990599-37990663)
chr4 (403-446)||(51066240-51066283)
chr4 (354-445)||(40012550-40012640)
chr4 (396-441)||(28202598-28202643)
chr4 (362-443)||(28202701-28202782)
[»] chr5 (12 HSPs)
chr5 (273-449)||(17064279-17064455)
chr5 (273-446)||(20983006-20983179)
chr5 (306-449)||(37976535-37976682)
chr5 (284-449)||(41910793-41910956)
chr5 (354-444)||(31673867-31673956)
chr5 (515-572)||(33001304-33001361)
chr5 (273-369)||(35237103-35237199)
chr5 (513-575)||(33014624-33014685)
chr5 (334-449)||(5009417-5009531)
chr5 (354-445)||(39162859-39162947)
chr5 (406-449)||(35237059-35237102)
chr5 (393-448)||(38255559-38255614)
[»] chr2 (25 HSPs)
chr2 (270-449)||(44650346-44650525)
chr2 (273-449)||(17136343-17136519)
chr2 (279-449)||(2754051-2754221)
chr2 (272-449)||(40155995-40156172)
chr2 (268-449)||(10745232-10745413)
chr2 (273-449)||(5039376-5039552)
chr2 (273-440)||(6672802-6672969)
chr2 (272-449)||(2357076-2357252)
chr2 (273-449)||(25987661-25987838)
chr2 (289-449)||(21637869-21638029)
chr2 (270-449)||(36380132-36380311)
chr2 (310-449)||(45136970-45137109)
chr2 (306-449)||(36836329-36836472)
chr2 (271-449)||(7860146-7860324)
chr2 (273-447)||(30372682-30372856)
chr2 (273-449)||(26690110-26690286)
chr2 (344-449)||(558439-558544)
chr2 (309-449)||(33066582-33066722)
chr2 (282-449)||(3200847-3201013)
chr2 (273-450)||(13047155-13047324)
chr2 (272-449)||(21487105-21487281)
chr2 (274-446)||(4553561-4553734)
chr2 (400-449)||(2098826-2098875)
chr2 (273-350)||(2098939-2099016)
chr2 (355-395)||(30477240-30477280)
[»] chr6 (9 HSPs)
chr6 (279-449)||(35163750-35163920)
chr6 (272-449)||(2711740-2711911)
chr6 (276-449)||(19686827-19687000)
chr6 (344-449)||(20685352-20685457)
chr6 (344-449)||(17948707-17948812)
chr6 (343-446)||(15070151-15070254)
chr6 (271-449)||(14505525-14505700)
chr6 (279-371)||(14496314-14496406)
chr6 (344-420)||(24336642-24336718)
[»] chr8 (21 HSPs)
chr8 (273-449)||(19723267-19723443)
chr8 (269-449)||(11403953-11404133)
chr8 (270-449)||(4840093-4840272)
chr8 (273-449)||(22711465-22711641)
chr8 (273-449)||(32296639-32296815)
chr8 (274-446)||(28739564-28739736)
chr8 (306-449)||(29767177-29767318)
chr8 (344-446)||(17095577-17095679)
chr8 (293-449)||(41553261-41553417)
chr8 (271-449)||(11610234-11610412)
chr8 (273-416)||(24475029-24475172)
chr8 (273-449)||(30682795-30682970)
chr8 (354-449)||(36261683-36261778)
chr8 (272-393)||(27881044-27881165)
chr8 (272-393)||(28021225-28021346)
chr8 (346-429)||(21355004-21355087)
chr8 (363-446)||(11909426-11909509)
chr8 (354-445)||(43288109-43288200)
chr8 (389-449)||(27879560-27879620)
chr8 (389-449)||(28019741-28019801)
chr8 (402-445)||(44741924-44741967)
[»] chr1 (22 HSPs)
chr1 (273-446)||(30054445-30054618)
chr1 (272-448)||(30370061-30370237)
chr1 (272-449)||(45323961-45324138)
chr1 (279-446)||(21090077-21090244)
chr1 (273-449)||(12025137-12025313)
chr1 (273-449)||(20014414-20014590)
chr1 (309-448)||(30850841-30850980)
chr1 (297-449)||(4573359-4573511)
chr1 (344-451)||(22024130-22024237)
chr1 (117-274)||(43566481-43566646)
chr1 (273-449)||(33763254-33763430)
chr1 (346-449)||(14498079-14498182)
chr1 (279-446)||(35617942-35618104)
chr1 (361-440)||(35371754-35371833)
chr1 (1-98)||(43566354-43566454)
chr1 (344-449)||(33762540-33762645)
chr1 (474-556)||(43566634-43566716)
chr1 (306-446)||(44438553-44438693)
chr1 (389-451)||(17015192-17015254)
chr1 (273-363)||(15034411-15034501)
chr1 (375-445)||(17291828-17291897)
chr1 (546-575)||(43566717-43566746)
[»] scaffold0021 (1 HSPs)
scaffold0021 (270-449)||(107692-107870)
[»] scaffold0691 (1 HSPs)
scaffold0691 (319-424)||(6994-7099)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 35109647 - 35109823
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||    
T  35109647 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaat 35109746  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109747 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 35109823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 273 - 451
Target Start/End: Complemental strand, 38265413 - 38265235
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||||||  |||||||||| ||  ||||||||| |||||||||||||||||||    
T  38265413 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 38265314  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttat 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265313 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttat 38265235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 279 - 449
Target Start/End: Complemental strand, 21577268 - 21577098
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||| || |||||| |||||||||||||||||| ||||||    
T  21577268 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctt 21577169  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21577168 tgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 21577098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 16059532 - 16059356
Alignment:
Q  270 attaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgt 369  Q
    |||||||| |||||||||| |||||||||||| || ||||||||||||||||||||| ||||||||||| ||  ||||||||| | ||||||||||||||    
T  16059532 attaactccaaaggcttggactagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgt 16059433  T
Q  370 aattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16059432 aattacctttgtaagtgctctctgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaa 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 34721790 - 34721966
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||| ||| ||| ||  ||||||||| |||||||||||||||||||    
T  34721790 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaat 34721889  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  34721890 tacctttgtaagtgctctttgagcccgaaggacttccctgccttggactcgggcaccatcccctcaccctaaaattt 34721966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 284 - 445
Target Start/End: Original strand, 41151139 - 41151301
Alignment:
Q  284 cttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattaccttt-gta 382  Q
    |||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||  ||||| ||| |||||||||||||||||||||||||| |||    
T  41151139 cttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttttgta 41151238  T
Q  383 agtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41151239 agtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 41151301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 279 - 446
Target Start/End: Complemental strand, 38405324 - 38405157
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    |||||||| |||||||||||||| || |||||||||||||||||||| ||| ||||||||  |  ||||||||| ||||||||||||||||||||| |||    
T  38405324 aaaggcttcgtctagtggtaaaaagacaggtcttgaatccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaattatctt 38405225  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38405224 tgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 38405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 272 - 446
Target Start/End: Complemental strand, 18117121 - 18116947
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||||  |  |||||||||  |||||||||||||||||    
T  18117121 taactccaaaggcttgttctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaa 18117022  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18117021 ttacctttgtaggtgctctttgaggtcgaagatcttccctgccttggactggggcaccatcccctcaccctaaaa 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 271 - 444
Target Start/End: Original strand, 11216723 - 11216896
Alignment:
Q  271 ttaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgta 370  Q
    ||||||| ||||| |||||||||||||||| ||| |||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  11216723 ttaactccaaaggtttggtctagtggtaaagtgacaggtcttgaatctgagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgta 11216822  T
Q  371 attacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 444  Q
    | |||||||||||||||||||||||||||||||||||| || | ||||||| ||||| ||| ||||||||||||    
T  11216823 aatacctttgtaagtgctctttgagcccgaaggtcttctctactttggactagggcatcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 279 - 449
Target Start/End: Original strand, 45278414 - 45278584
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    |||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||  ||||||||| | ||||| ||||||||||||| |||    
T  45278414 aaagtcttggtctagtggtaaaaagataggtcttgaatccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctt 45278513  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  45278514 tgtaagtgctctttaaacccgaatgtcttccctgccttggactggagcaccatcccctcaccctaaaattt 45278584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 311 - 445
Target Start/End: Original strand, 12472115 - 12472249
Alignment:
Q  311 ttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccc 410  Q
    |||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  12472115 ttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccc 12472214  T
Q  411 tgccttggactggggcaccatcccctcaccctaaa 445  Q
    || |||||||||||| |||||||||||||||||||    
T  12472215 tgtcttggactggggtaccatcccctcaccctaaa 12472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 344 - 449
Target Start/End: Complemental strand, 37095315 - 37095210
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095315 tagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 37095216  T
Q  444 aaattt 449  Q
    ||||||    
T  37095215 aaattt 37095210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 330 - 449
Target Start/End: Complemental strand, 245383 - 245264
Alignment:
Q  330 ggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 429  Q
    ||||||||| ||  ||||||| | ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  245383 ggttcgagccccgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcacc 245284  T
Q  430 atcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||    
T  245283 atcccctcaccctaaaattt 245264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 279 - 446
Target Start/End: Original strand, 48176362 - 48176529
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    |||||||||||||| |||||||| || || |||| ||||||||||||  ||||||||||| ||  ||||||||| ||| |||||||||||||| ||| ||    
T  48176362 aaaggcttggtcta-tggtaaaaagacagatcttaaatccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaaatacttt 48176460  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccct-gccttggactggggcaccatcccctcaccctaaaa 446  Q
    |||||||| | |||||||| |||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  48176461 tgtaagtgttttttgagccggaaggttttccctccccttggactggggcaccatcccctcaccctaaaa 48176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 355 - 449
Target Start/End: Original strand, 28407546 - 28407636
Alignment:
Q  355 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||    |  |||||||| |||||||||||||||||||||||||||||    
T  28407546 gagggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggt----caagccttggattggggcaccatcccctcaccctaaaattt 28407636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 449
Target Start/End: Original strand, 23028684 - 23028815
Alignment:
Q  318 cgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 417  Q
    ||||||||  ||||||||| ||||  || ||||||  |||||| |||||||||||||||||| |||||| | ||||| |||||||| ||||||| ||||     
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctacctta 23028783  T
Q  418 gactggggcaccatcccctcaccctaaaattt 449  Q
    ||||| | |||||||| |||| ||||||||||    
T  23028784 gactgagacaccatcctctcatcctaaaattt 23028815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 445
Target Start/End: Original strand, 24123021 - 24123117
Alignment:
Q  355 gagggaggtaaatgtaattacctttgtaagtgctctttgagcc------cgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    |||| ||||||||||||||||||||||||||  |||||||  |      ||||||||||| |||||||||| |||| |||||||| |||||||||||    
T  24123021 gaggaaggtaaatgtaattacctttgtaagtattctttgaatctgaattcgaaggtcttctctgccttggattgggtcaccatcctctcaccctaaa 24123117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 39234853 - 39234895
Alignment:
Q  407 tccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  39234853 tccctgccatggactggggcaccatcccctcacccaaaaattt 39234895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 40038620 - 40038674
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaac 326  Q
    |||||| |||| |||| ||||||||||||| || |||||||||||| ||||||||    
T  40038620 taactccaaagacttgatctagtggtaaaaagacaggtcttgaatctgagagaac 40038674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 8400811 - 8400987
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||  ||||||||| |||||||||||||||||||    
T  8400811 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 8400910  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400911 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 8400987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 270 - 449
Target Start/End: Original strand, 7417751 - 7417930
Alignment:
Q  270 attaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgt 369  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||  ||||||||| ||||||||||||||||    
T  7417751 attaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 7417850  T
Q  370 aattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7417851 aattacctttgtaagtgctctttgagcccgaaggtcttcactgccttggactggggcaccatcccctcaccctaaaattt 7417930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 279 - 449
Target Start/End: Original strand, 35198727 - 35198897
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||| || |||||| | |||||||||||||||| ||||||    
T  35198727 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctt 35198826  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35198827 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaaattt 35198897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 308 - 449
Target Start/End: Original strand, 50823689 - 50823830
Alignment:
Q  308 gtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 407  Q
    ||||||||||||||||||  ||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823689 gtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 50823788  T
Q  408 ccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50823789 ccctgccttggactggggcaccatcccctcaccctaaaattt 50823830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 308 - 449
Target Start/End: Complemental strand, 50852171 - 50852030
Alignment:
Q  308 gtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 407  Q
    ||||||||||||||||||  ||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852171 gtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 50852072  T
Q  408 ccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50852071 ccctgccttggactggggcaccatcccctcaccctaaaattt 50852030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 272 - 449
Target Start/End: Original strand, 22855842 - 22856019
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||| ||||||||||||||||| || ||||||| ||| ||||||||| | ||||||||| ||  ||||| ||| ||||||||||||||||||    
T  22855842 taactccaaaggtttggtctagtggtaaaaagacaggtcttaaattcgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaa 22855941  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22855942 ttacctttgtaagtgctctttaagcccaaaggtcttccctgccttggactggagcaccatcccctcaccctaaaattt 22856019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 271 - 446
Target Start/End: Original strand, 34824510 - 34824685
Alignment:
Q  271 ttaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgta 370  Q
    ||||||| ||||  ||||||||||||||||| ||||| ||||||||||||||||||  | |||||||  || |||||||||| | |||||||||||||||    
T  34824510 ttaactccaaagatttggtctagtggtaaaaagatagatcttgaatccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgta 34824609  T
Q  371 attacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34824610 attatctttgtaagtgctctttgatcccgaaggtcttcccggccttggactggggcaccatcccctcaccctaaaa 34824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 271 - 449
Target Start/End: Original strand, 52545275 - 52545453
Alignment:
Q  271 ttaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgta 370  Q
    ||||||| ||||| ||||||| ||| |||||||| ||||||||||||||||| || |||||||||||| ||  |||||||||   |||||||||||||||    
T  52545275 ttaactcgaaaggtttggtctggtgataaaatgacaggtcttgaatccgagaaaattcgggttcgagccccgctagtgcctttaaagggaggtaaatgta 52545374  T
Q  371 attacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    | ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52545375 aatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 52545453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 282 - 446
Target Start/End: Original strand, 55467964 - 55468129
Alignment:
Q  282 ggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgt 381  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||  ||||||||||| ||| || ||| || |||||||||||||||||| |||||||||    
T  55467964 ggcttggtctagtggtaaaatgacatgtcttgaattcgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttgt 55468063  T
Q  382 aagtgctctttgag-cccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55468064 aagtgctctttgagccccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaa 55468129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 288 - 446
Target Start/End: Complemental strand, 43334215 - 43334057
Alignment:
Q  288 gtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgc 387  Q
    |||||| |||||||||| | || |||||||||||||||| || |||||||| ||  ||||| ||| |||||||||||||||||| ||| |||||||||||    
T  43334215 gtctagaggtaaaatgacaagttttgaatccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaaatacttttgtaagtgc 43334116  T
Q  388 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43334115 tatttgagcccgaaggtcttccctgccttggactggggtaccatcccctcaccctaaaa 43334057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 279 - 413
Target Start/End: Complemental strand, 48078111 - 48077977
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  || ||||||||| ||||| |||||||||||| || |||    
T  48078111 aaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaaatatctt 48078012  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgc 413  Q
    ||||||||||||||||||| |||||||||||||||    
T  48078011 tgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 22371832 - 22371728
Alignment:
Q  346 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaa 22371733  T
Q  446 attta 450  Q
    |||||    
T  22371732 attta 22371728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 37330692 - 37330607
Alignment:
Q  364 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 37330607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 30534987 - 30534895
Alignment:
Q  364 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttatttcat 456  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaatttctttcat 30534895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 344 - 449
Target Start/End: Original strand, 29635895 - 29636001
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc-atcccctcaccct 442  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| || ||||||| ||    
T  29635895 tagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcaccaattccctcacgct 29635994  T
Q  443 aaaattt 449  Q
    |||||||    
T  29635995 aaaattt 29636001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 37454829 - 37454744
Alignment:
Q  364 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaattt 37454744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 50726140 - 50726003
Alignment:
Q  306 aggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc 405  Q
    |||||||||||||||||||| |||||||||||| || |||||| ||| ||||| |||||||| ||||||| ||||||||| || ||||||  |||| |||    
T  50726140 aggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtc 50726041  T
Q  406 ttccctgccttggactggggcaccatcccctcacccta 443  Q
    |||||| | ||||| |||||||||||||| ||||||||    
T  50726040 ttccctactttggattggggcaccatcccttcacccta 50726003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 306 - 443
Target Start/End: Original strand, 50786708 - 50786845
Alignment:
Q  306 aggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc 405  Q
    |||||||||||||||||||| |||||||||||| || |||||| ||| ||||| |||||||| ||||||| ||||||||| || ||||||  |||| |||    
T  50786708 aggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtc 50786807  T
Q  406 ttccctgccttggactggggcaccatcccctcacccta 443  Q
    |||||| | ||||| |||||||||||||| ||||||||    
T  50786808 ttccctactttggattggggcaccatcccttcacccta 50786845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 19872586 - 19872483
Alignment:
Q  346 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    ||||||| ||||| |||||||  ||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  19872586 gtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctcatcctaaa 19872487  T
Q  446 attt 449  Q
    ||||    
T  19872486 attt 19872483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 291 - 445
Target Start/End: Original strand, 42876189 - 42876343
Alignment:
Q  291 tagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctct 390  Q
    ||||||||||| ||||| ||||| || |||| || |||| |||||||| | | ||||| |||  || |||||||||||||||||||||||||||||||||    
T  42876189 tagtggtaaaaagatagatcttgtattcgagggatctcgagttcgagcccgactagtgtctttagatggaggtaaatgtaattacctttgtaagtgctct 42876288  T
Q  391 ttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    |||| |  ||| |||||||||  |||||||| ||||||||||| |||||||||||    
T  42876289 ttgaacttgaatgtcttccctatcttggactagggcaccatcctctcaccctaaa 42876343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 25910738 - 25910666
Alignment:
Q  377 tttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaattt 25910666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 449
Target Start/End: Original strand, 25589253 - 25589346
Alignment:
Q  349 ccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 448  Q
    |||| ||| |||||||||||||| |||||| |||||||||||||||| ||||       ||||||||||||| |||||||| ||||||||||||||||||    
T  25589253 cctttggaaggaggtaaatgtaaataccttagtaagtgctctttgagtccga-------ccctgccttggacgggggcaccctcccctcaccctaaaatt 25589345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 30203744 - 30203657
Alignment:
Q  356 agggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||||||||||||||||  |||||||||| || ||||||||| ||||||| |||| || |||| ||||||||||||||||||||| ||||||    
T  30203744 agggaggtaaatgtaa--acctttgtaaatgttctttgagctcgaaggttttcc-tgtcttgaactggggcaccatcccctcactctaaaa 30203657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 5548970 - 5549061
Alignment:
Q  289 tctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttg 380  Q
    ||||||||||||| |||||||||| ||||||||||| || || ||||||||  | || ||| || |||||||| ||||||||| ||||||||    
T  5548970 tctagtggtaaaaagataggtcttcaatccgagagatcttggattcgagctttactaatgcttttggagggagataaatgtaaatacctttg 5549061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 773666 - 773709
Alignment:
Q  406 ttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  773666 ttcccttccttggactggggcaccatcccctcaccctagaattt 773709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 399 - 444
Target Start/End: Complemental strand, 31297574 - 31297529
Alignment:
Q  399 gaaggtcttccctgccttggactggggcaccatcccctcaccctaa 444  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  31297574 gaaggtcttccttgccttggactggggaaccatgccctcaccctaa 31297529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 39438903 - 39438829
Alignment:
Q  374 acctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||| ||||| |  || || ||||| ||| ||||| ||||||||||||| |||||||||||||||||    
T  39438903 acctttgtaagtgttctttaaatccaaaagtctttcctaccttgaactggggcaccat-ccctcaccctaaaattt 39438829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 358989 - 358940
Alignment:
Q  402 ggtcttccctgccttggactggggcaccatcccctcaccctaaaatttat 451  Q
    ||||||| ||| ||| ||||  ||||||||||||||||||||||||||||    
T  358989 ggtcttctctgtcttagactatggcaccatcccctcaccctaaaatttat 358940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 14848552 - 14848620
Alignment:
Q  377 tttgtaagtgctctttgagcccgaaggtcttccctgccttggact-ggggcaccatcccctcaccctaaa 445  Q
    ||||| ||||| ||||||||| |||||| || ||||||||||||| ||||||||| ||||| ||||||||    
T  14848552 tttgtgagtgccctttgagcctgaaggtttttcctgccttggactaggggcacca-ccccttaccctaaa 14848620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 38724507 - 38724459
Alignment:
Q  347 tgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgag 395  Q
    ||||| |||||||||||||| |||| | |||||||||||||| ||||||    
T  38724507 tgcctccggagggaggtaaacgtaaatccctttgtaagtgctatttgag 38724459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 8e-75; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 272 - 446
Target Start/End: Original strand, 51066448 - 51066622
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||| |||    
T  51066448 taactccaaagacttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataa 51066547  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51066548 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 51066622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 272 - 446
Target Start/End: Complemental strand, 46494575 - 46494401
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  46494575 taactccaaaggtttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 46494476  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46494475 atacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaa 46494401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 272 - 449
Target Start/End: Complemental strand, 7173762 - 7173585
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||  ||  ||||||||| ||| |||||||||||| |    
T  7173762 taactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtca 7173663  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7173662 atacctttgtaagtgctctttgagcccgaaggtcttccctgcgttggactggggcaccatcccctcaccctaaaattt 7173585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 293 - 449
Target Start/End: Original strand, 36192517 - 36192673
Alignment:
Q  293 gtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctcttt 392  Q
    ||||||||| || ||||||||||| ||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  36192517 gtggtaaaaagacaggtcttgaattcgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttgtaaatgctcttt 36192616  T
Q  393 gagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36192617 gagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaattt 36192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 297 - 449
Target Start/End: Complemental strand, 51714117 - 51713965
Alignment:
Q  297 taaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagc 396  Q
    |||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||| | |||||||||||| ||| ||||||||||||||||||||||||    
T  51714117 taaaatgacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagc 51714018  T
Q  397 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  51714017 ccgaaggtcttccctgctttgaactggggcaccatcccctcaccctaaaattt 51713965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 272 - 449
Target Start/End: Complemental strand, 39863955 - 39863778
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||  | ||  ||||||||| ||||||| ||||||||||    
T  39863955 taactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaa 39863856  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||||| | ||| ||||||||||||||||||||    
T  39863855 ttacctttgtaagtgctctttgaacccgaaggtcttctctaccttggactgagacactatcccctcaccctaaaattt 39863778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 277 - 445
Target Start/End: Original strand, 32139124 - 32139292
Alignment:
Q  277 caaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacc 376  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||  |||||||| | ||  ||||| ||| |||||||||||||||||||||||    
T  32139124 caaaaggcttggtctagtggtaaaaggacaggtcatgaatccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacc 32139223  T
Q  377 tttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  32139224 tttgtaagtgttctttgagcctgaaggtcttctctgccttggactggggcaccatcccttcaccctaaa 32139292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 297 - 449
Target Start/End: Complemental strand, 30970536 - 30970384
Alignment:
Q  297 taaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagc 396  Q
    |||||||| ||||||||||||||||||||  |||||||||||  || ||||||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  30970536 taaaatgacaggtcttgaatccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagc 30970437  T
Q  397 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
     |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30970436 tcgaaggtcttccctaccttagactggggcaccatcccctcaccctaaaattt 30970384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 272 - 419
Target Start/End: Original strand, 8740403 - 8740550
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||||||||| | ||||||||||| ||  ||||||||| ||||||||||||||||||    
T  8740403 taactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 8740502  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 419  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||    
T  8740503 atacctttgtaagtgctctttgagcccgaaggtcttccatgccttgga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 271 - 449
Target Start/End: Original strand, 50905702 - 50905880
Alignment:
Q  271 ttaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgta 370  Q
    ||||||| ||||| || |||||||||||||| || ||||||||||||||||||||   |||||||||| ||  ||||||||| |||| ||||||||||||    
T  50905702 ttaactccaaaggtttagtctagtggtaaaaagacaggtcttgaatccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgta 50905801  T
Q  371 attacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||| ||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||  ||||||||||||||    
T  50905802 attatctttgtaggtgctctttgagtccgaaggtcttccatgccttgaactggggcaccatcctttcaccctaaaattt 50905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 281 - 446
Target Start/End: Complemental strand, 2294878 - 2294719
Alignment:
Q  281 aggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttg 380  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| | |  ||||||||| ||||| ||||||||||||||||         
T  2294878 aggcttggtctagtggtaaaaagacaggtcttgaattcgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac----- 2294784  T
Q  381 taagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
     ||||| || ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  2294783 -aagtgttcgttgagcccgaaagtcttcactgccttagactggggcaccatcccctcaccctaaaa 2294719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 29576444 - 29576547
Alignment:
Q  346 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaa 29576543  T
Q  446 attt 449  Q
    ||||    
T  29576544 attt 29576547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 55231715 - 55231819
Alignment:
Q  345 agtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 444  Q
    |||||||| | |||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  55231715 agtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaa 55231814  T
Q  445 aattt 449  Q
    |||||    
T  55231815 aattt 55231819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 373 - 449
Target Start/End: Complemental strand, 22304167 - 22304091
Alignment:
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaattt 22304091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 355 - 449
Target Start/End: Original strand, 676766 - 676860
Alignment:
Q  355 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||    
T  676766 gagggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaattt 676860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 332 - 449
Target Start/End: Original strand, 2570216 - 2570333
Alignment:
Q  332 ttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat 431  Q
    ||||||||||  | ||||||| |||||||||||||| ||| || | || ||| || |||||||| |||||| ||||||||||||||||||||||||||||    
T  2570216 ttcgagctccgctggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccat 2570315  T
Q  432 cccctcaccctaaaattt 449  Q
    ||||||||||||||||||    
T  2570316 cccctcaccctaaaattt 2570333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 311 - 449
Target Start/End: Complemental strand, 47627133 - 47626993
Alignment:
Q  311 ttgaatccgagagaactcgggttcgag--ctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttc 408  Q
    |||||||||||||||| ||| ||||||  | ||| ||||||||| | |||||||||||||||| ||||| | ||| | |||||||| | |||||||||||    
T  47627133 ttgaatccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttc 47627034  T
Q  409 cctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||  ||||||| ||||||||||||||||    
T  47627033 cctgccttggactggaacaccatctcctcaccctaaaattt 47626993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 344 - 446
Target Start/End: Original strand, 41523424 - 41523526
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    ||||| ||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||  |||||| |||| ||||||||| ||| ||||    
T  41523424 tagtgtctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatcccttcatccta 41523523  T
Q  444 aaa 446  Q
    |||    
T  41523524 aaa 41523526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 355 - 447
Target Start/End: Complemental strand, 51279127 - 51279035
Alignment:
Q  355 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaat 447  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||  ||||||| |  ||||||||||||||||||||||||    
T  51279127 gagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggcaccatcccctcaccctaaaat 51279035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 4080647 - 4080552
Alignment:
Q  354 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||| ||||||| ||||||||||| | ||| |||||| ||| |||||| ||| ||||||||||||| || ||||||||    
T  4080647 ggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctcgccttaaaattt 4080552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 22423371 - 22423479
Alignment:
Q  312 tgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccct 411  Q
    |||||| |||||| ||||| ||||||| |  ||||| |||| |||||||||||||||||| ||| |||||||||| |||||| |  ||||||||||||||    
T  22423371 tgaatctgagagatctcggattcgagcccggttagtacctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccct 22423470  T
Q  412 gccttggac 420  Q
    || ||||||    
T  22423471 gctttggac 22423479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 451
Target Start/End: Complemental strand, 50399764 - 50399640
Alignment:
Q  327 tcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggc 426  Q
    |||||||||||| ||  ||||||  | ||||| |||||||||||| |||||||||||||| ||||||||||  || |||||| || |||||||   ||||    
T  50399764 tcgggttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcctaaatgtcttctctaccttggataagggc 50399665  T
Q  427 accatcccctcaccctaaaatttat 451  Q
    | ||||| ||||||||||| |||||    
T  50399664 atcatccgctcaccctaaattttat 50399640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 23084530 - 23084468
Alignment:
Q  384 gtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| |||||| |||||||||||||    
T  23084530 gtgctctttgagtccgaaggtcttccctaccttgaactggggtaccatctcctcaccctaaaa 23084468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 37990663 - 37990599
Alignment:
Q  381 taagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    ||||| ||||||||||| |||| |||||||| ||||||||||||||||||| |||||| ||||||    
T  37990663 taagtactctttgagcctgaagatcttccctaccttggactggggcaccattccctcatcctaaa 37990599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 51066240 - 51066283
Alignment:
Q  403 gtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcaccctaaaa 51066283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 445
Target Start/End: Original strand, 40012550 - 40012640
Alignment:
Q  354 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    |||||||||||||||||| | ||||||| ||||||| ||||| |  |||||||||||| | ||||||| || |||| ||| ||||| |||||    
T  40012550 ggagggaggtaaatgtaaatccctttgtgagtgctc-ttgagtcataaggtcttccctacgttggactaggacaccgtcctctcacactaaa 40012640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 28202643 - 28202598
Alignment:
Q  396 cccgaaggtcttccctgccttggactggggcaccatcccctcaccc 441  Q
    |||||||||||| |||| ||| |||||| |||||||||||||||||    
T  28202643 cccgaaggtctttcctgtcttagactggagcaccatcccctcaccc 28202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 443
Target Start/End: Original strand, 28202701 - 28202782
Alignment:
Q  362 gtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    |||||||||| | | |||||||||| ||| |||||| |||| |||||| ||||||  | ||  |||||||||||||||||||    
T  28202701 gtaaatgtaaatgcatttgtaagtgttctatgagcctgaagatcttccttgcctttaattgatgcaccatcccctcacccta 28202782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 17064279 - 17064455
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  |  ||||||||| ||||||||||||||||||     
T  17064279 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaa 17064378  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17064379 tacctttgtaagtgctctttaagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 17064455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 273 - 446
Target Start/End: Complemental strand, 20983179 - 20983006
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||||||||| ||||| || ||||||||||||| ||||||  ||||||||||| ||  |||||||||||||| |||||||||| |||    
T  20983179 aactccaaaggcttggtctagtgataaaaagacaggtcttgaatccaagagaatccgggttcgagccccgctagtgccttcggagagaggtaaatgcaat 20983080  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20983079 tacatttgtaagtgctctttgagcccgaaagtcttccctgccttggactggggcaccatcccctcaccctaaaa 20983006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 306 - 449
Target Start/End: Original strand, 37976535 - 37976682
Alignment:
Q  306 aggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaat----gtaattacctttgtaagtgctctttgagcccgaa 401  Q
    |||||||||||||||||||||  |||||||||| ||  |||||| || | ||||||||||||    |||| |||||||||||||||| ||||||||||||    
T  37976535 aggtcttgaatccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaattaatgtaaatacctttgtaagtgctatttgagcccgaa 37976634  T
Q  402 ggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||| || ||||||||| |||||||||||||||||||||||||||||||    
T  37976635 ggtttttcctgccttgaactggggcaccatcccctcaccctaaaattt 37976682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 284 - 449
Target Start/End: Original strand, 41910793 - 41910956
Alignment:
Q  284 cttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaa 383  Q
    |||| ||||||||||||| || |||||||||||| ||||||| | ||||| ||| |   |||||  ||| ||||| ||||||||||||||| ||||||||    
T  41910793 cttgctctagtggtaaaaagacaggtcttgaatctgagagaatttgggtttgagtttg-ttagtatctttggagg-aggtaaatgtaattaactttgtaa 41910890  T
Q  384 gtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||||||||    
T  41910891 gtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaattt 41910956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 444
Target Start/End: Original strand, 31673867 - 31673956
Alignment:
Q  354 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 444  Q
    |||| |||| |||||||| | |||||| |||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  31673867 ggagagaggaaaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 515 - 572
Target Start/End: Original strand, 33001304 - 33001361
Alignment:
Q  515 atgggaaatactatttaacgcgagaaaataatcccgaccttgaattctactctgccct 572  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  33001304 atgggaaatactatttaacgcgagaaaataatcccgaacttgtattctactctgccct 33001361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 369
Target Start/End: Complemental strand, 35237199 - 35237103
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgt 369  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||   || ||||||| ||  ||||| ||| | ||||||||||||||    
T  35237199 aactctaaaggcttggtctagtggtaaaatgatacgtcttgaattcgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 575
Target Start/End: Original strand, 33014624 - 33014685
Alignment:
Q  513 ttatgggaaatactatttaacgcgagaaaataatcccgaccttgaattctactctgccctttg 575  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||    
T  33014624 ttatgggaaatactatttaatgcgagaaa-taatcccgaacttgtattctactctgccctttg 33014685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 449
Target Start/End: Complemental strand, 5009531 - 5009417
Alignment:
Q  334 cgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcc 433  Q
    ||||| || |||||| ||| |||| ||| ||||||||| ||  ||||||| || |||||||  ||||||||||||| ||||||| ||||| ||| |||||    
T  5009531 cgagccccgttagtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatcc 5009432  T
Q  434 cctcaccctaaaattt 449  Q
    || |||||||||||||    
T  5009431 cc-caccctaaaattt 5009417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 39162947 - 39162859
Alignment:
Q  354 ggagggaggtaaatgtaattacctt-tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    ||||| |||||||||||| |||||| ||||| |||||||||||||    |||||||  ||||||||||||||||||| |||| ||||||||||    
T  39162947 ggaggaaggtaaatgtaaataccttgtgtaaatgctctttgagcc----ggtcttctgtgccttggactggggcaccgtcccatcaccctaaa 39162859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 35237102 - 35237059
Alignment:
Q  406 ttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||| |||||||||||||||| |||||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcactctaaaattt 35237059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 38255614 - 38255559
Alignment:
Q  393 gagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 448  Q
    |||||| ||||||||||||   |||||||||||||||||| ||||||| |||||||    
T  38255614 gagcccaaaggtcttccctattttggactggggcaccatctcctcaccttaaaatt 38255559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 270 - 449
Target Start/End: Original strand, 44650346 - 44650525
Alignment:
Q  270 attaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgt 369  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||  |||||||||| |||||||||| ||||||||||||||||    
T  44650346 attaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgt 44650445  T
Q  370 aattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  44650446 aattacctttgtaagtgctctttgagtccgaagatcttccctgccttggaccggggcaccatcccctcaccctaaaattt 44650525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 17136343 - 17136519
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||||||||| |||||||| |||| ||||||| |||||||| ||||||||||| || |||||||||| ||||||||||||||||||     
T  17136343 aactccaaaggcttggtctagtgataaaatgacaggttttgaatctgagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaa 17136442  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17136443 tacctttgtaagtgctctttgagcccgaaggtcttccccgccttggactggggcaccatcccctcaccctaaaattt 17136519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 279 - 449
Target Start/End: Complemental strand, 2754221 - 2754051
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||  ||| || |||||| |||||||||||||||||| ||||||    
T  2754221 aaaggcttggtttagtggtaaaatgacaggtcttgaatccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacctt 2754122  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2754121 tgtaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 2754051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 272 - 449
Target Start/End: Original strand, 40155995 - 40156172
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||| ||||||||||||||||| || ||||||||||||||||||||  ||||||||||| ||  ||||||||| ||||||||||||||||||    
T  40155995 taactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 40156094  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  40156095 ttacctttgtaagtgctctttgagcccgaaggtcttccctaccttgaactggggcaccatcccctcaccataaaattt 40156172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 268 - 449
Target Start/End: Complemental strand, 10745413 - 10745232
Alignment:
Q  268 taattaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaat 367  Q
    |||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||| ||||| ||||| ||  |||||||||  |||||||||||||    
T  10745413 taattaactccaaaggcttggtttagtggtaaaaagacaggtcttgaattcgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaat 10745314  T
Q  368 gtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10745313 gtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttggactggggcaccatcccctcaccctaaaattt 10745232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 5039376 - 5039552
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||  |||||| ||  |||||||||||| |||||    
T  5039376 aactccaaaggcttggtatagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaat 5039475  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||    
T  5039476 tacctttgtaagtgctctttgagcccgaagatcttccctaccttggactagggcaccatcccctcactctaaaattt 5039552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 273 - 440
Target Start/End: Complemental strand, 6672969 - 6672802
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||| ||| ||  ||||||||| |||||||||||||||||||    
T  6672969 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaat 6672870  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 440  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672869 tacctttgtacgcgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 6672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 272 - 449
Target Start/End: Complemental strand, 2357252 - 2357076
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||    
T  2357252 taactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaa 2357153  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
     |||| |||||| |||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2357152 ataccattgtaaatgct-tttgagttcgaaggtcttccatgccttggactggggcaccatcccctcaccctaaaattt 2357076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 273 - 449
Target Start/End: Complemental strand, 25987838 - 25987661
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||| |  | |||||||| || ||||||||||||||||||||||||||||||||| ||  ||||||||| |||||||||||||||||||    
T  25987838 aactccaaaggcttgatacaatggtaaaaagacaggtcttgaatccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 25987739  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtc-ttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  25987738 tacctttgtaagtgctctttgagtccgaaggtctttccctgccttggtctggggcaccatcccctcaccctaaaattt 25987661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 289 - 449
Target Start/End: Original strand, 21637869 - 21638029
Alignment:
Q  289 tctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgct 388  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| |||| ||  ||||||||| |||||||||||||||||| ||||||||||||||||    
T  21637869 tctagtggtaaaatgataggtcttgaattcgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgct 21637968  T
Q  389 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  21637969 ctttgagcccaaaggtcttctctgccttggactagggcaccatcccctcaccctaaaattt 21638029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 270 - 449
Target Start/End: Complemental strand, 36380311 - 36380132
Alignment:
Q  270 attaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgt 369  Q
    |||||||  ||||||||||||||||||||||  || ||||||||||| ||||| |||||||||| || | ||  ||||||||| ||||||||||||||||    
T  36380311 attaacttcaaaggcttggtctagtggtaaacagacaggtcttgaattcgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgt 36380212  T
Q  370 aattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  36380211 aattccctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgaggcaccatcccctcaccctaaaattt 36380132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 310 - 449
Target Start/End: Complemental strand, 45137109 - 45136970
Alignment:
Q  310 cttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcc 409  Q
    ||||||||||||||||| ||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45137109 cttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcc 45137010  T
Q  410 ctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  45137009 ctgccttggactggggcaccatcccttcaccctaaaattt 45136970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 306 - 449
Target Start/End: Complemental strand, 36836472 - 36836329
Alignment:
Q  306 aggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc 405  Q
    ||||||||||||||||||||| || |||||||  ||  | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36836472 aggtcttgaatccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatc 36836373  T
Q  406 ttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  36836372 ttccctgccttggactggggcaccatcccctcaccttaaaattt 36836329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 271 - 449
Target Start/End: Complemental strand, 7860324 - 7860146
Alignment:
Q  271 ttaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgta 370  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||| |||| ||  ||||||||| |||||||||||||||||    
T  7860324 ttaactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgta 7860225  T
Q  371 attacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
      ||| |||||||||| ||||||||||||||| | ||| ||||||||||||| |||| ||||||||| |||||||||||    
T  7860224 catacatttgtaagtgttctttgagcccgaagattttctctgccttggactgaggcatcatcccctctccctaaaattt 7860146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 273 - 447
Target Start/End: Complemental strand, 30372856 - 30372682
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||| |  |||||||||||||  ||||||||| ||| ||||||||||||||     
T  30372856 aactccaaaggtttggtctagtggtaaaaagataggtcttgaattcgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaaa 30372757  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaat 447  Q
    || |||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||    
T  30372756 tatctttgttagtgctctttgagcccgaaggtcttccatgccttgaactggggtaccataccctcaccctaaaat 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 26690110 - 26690286
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||||||||||||||| || |||| || ||| ||||||||   |||||||||  ||  |||||| || |||||||||||||||||||    
T  26690110 aactccaaaggcttggtctagtggtaaaaagacaggttttaaattcgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaat 26690209  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||| |||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26690210 tacctttgtaagtgatctttgtgttcgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaattt 26690286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 344 - 449
Target Start/End: Complemental strand, 558544 - 558439
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||    
T  558544 tagtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcacccta 558445  T
Q  444 aaattt 449  Q
    ||||||    
T  558444 aaattt 558439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 309 - 449
Target Start/End: Original strand, 33066582 - 33066722
Alignment:
Q  309 tcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttc 408  Q
    ||||||||  |||||||  |||||||||||| || ||||| ||| |||| ||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  33066582 tcttgaatttgagagaatccgggttcgagcttcactagtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttc 33066681  T
Q  409 cctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
     || |||||||||||||||||||||||||| ||||||||||    
T  33066682 tctaccttggactggggcaccatcccctcatcctaaaattt 33066722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 282 - 449
Target Start/End: Original strand, 3200847 - 3201013
Alignment:
Q  282 ggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgt 381  Q
    |||||||||| ||||||||| || || |||||||||  |||||||  || |||||||  |  ||||||||| ||||||||||||||||||||||||||||    
T  3200847 ggcttggtct-gtggtaaaaagacagatcttgaatctaagagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttgt 3200945  T
Q  382 aagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||| |||||||||| |||| ||||| ||||||| ||||||||||||||| |||| |||||||||||    
T  3200946 aagtgttctttgagcctgaagatcttctctgccttagactggggcaccatctcctcgccctaaaattt 3201013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 273 - 450
Target Start/End: Complemental strand, 13047324 - 13047155
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| |||||||||||||   ||||||| || ||||||||||| ||||||||  ||||||||||| ||    ||  ||| |||||||||||||| ||||    
T  13047324 aactctaaaggcttggtct---ggtaaaaagacaggtcttgaattcgagagaatccgggttcgagccccgcatgt--ctttggagggaggtaaatataat 13047230  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattta 450  Q
    ||||||   ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  13047229 tacctt---aagtgctctttgagcccaaagatcttccctgccttggactggagcaccatcccctcaccctaaaattta 13047155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 449
Target Start/End: Original strand, 21487105 - 21487281
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||| || ||| ||||||||||||| ||||||||||||| |||  ||    ||| |||||||| | ||  ||| ||||||||||||||||||    
T  21487105 taactccaaaggtttagtcaagtggtaaaatgacaggtcttgaatccaaga--acctaagtttgagctccactggtatctttggagggaggtaaatgtaa 21487202  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat-cccctcaccctaaaattt 449  Q
     ||  ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  21487203 atatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatccccctcatcctaaaattt 21487281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 274 - 446
Target Start/End: Complemental strand, 4553734 - 4553561
Alignment:
Q  274 actcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagg-gaggtaaatgtaat 372  Q
    |||||||| | |||||||| |||||||| || | ||||||||| |||||||  || |||||||| ||   |||||  || ||||| ||||||||| |||     
T  4553734 actcaaaatgattggtctaatggtaaaaagacatgtcttgaattcgagagatttcaggttcgagttcagctagtgtttttggaggagaggtaaatataaa 4553635  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||| ||||||||| ||||||||| ||| |||||||| ||| ||| |||||||||||||||||||||| ||||||    
T  4553634 tacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcactctaaaa 4553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 2098875 - 2098826
Alignment:
Q  400 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 2098826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 350
Target Start/End: Complemental strand, 2099016 - 2098939
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgcc 350  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||| ||||  |||||||    
T  2099016 aactccaaaggcttggtctattggtaaaatgataggtcttgaattcgagagaacccaggttcgaactccgctagtgcc 2098939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 30477280 - 30477240
Alignment:
Q  355 gagggaggtaaatgtaattacctttgtaagtgctctttgag 395  Q
    ||||||||||||| ||| ||||||||||||| |||||||||    
T  30477280 gagggaggtaaatctaaatacctttgtaagttctctttgag 30477240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 5e-70; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 279 - 449
Target Start/End: Complemental strand, 35163920 - 35163750
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||  |||||||||| ||| || |||||| |||||||||||||||||| ||||||    
T  35163920 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctt 35163821  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163820 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 35163750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 272 - 449
Target Start/End: Complemental strand, 2711911 - 2711740
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||| |||||  || ||||||| ||| |||||| || ||||||||||||||||||    
T  2711911 taactcgaaaggcttggtctagtggtaaaatgacaggtcttgaatccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaa 2711812  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||      ||||||||||||||||||||||||    
T  2711811 atacctttgtaagtgctctttgagctcgaaggtcttccctgccttgga------caccatcccctcaccctaaaattt 2711740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 276 - 449
Target Start/End: Complemental strand, 19687000 - 19686827
Alignment:
Q  276 tcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattac 375  Q
    |||||||| |||||||||||||||||  | |||||||||||| ||||||||  |||||||||| ||  ||||||||| | ||||||||||||||||||||    
T  19687000 tcaaaaggtttggtctagtggtaaaaaaacaggtcttgaatctgagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattac 19686901  T
Q  376 ctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||| |||| ||| |||| |||||||||| |||||||||||||||||||||    
T  19686900 ctttgtaagtgctctttgagcccgaagatctttcctcccttagactggggcatcatcccctcaccctaaaattt 19686827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 344 - 449
Target Start/End: Original strand, 20685352 - 20685457
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20685352 tagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcacccta 20685451  T
Q  444 aaattt 449  Q
    ||||||    
T  20685452 aaattt 20685457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 344 - 449
Target Start/End: Original strand, 17948707 - 17948812
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    ||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  17948707 tagtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcacctta 17948806  T
Q  444 aaattt 449  Q
    ||||||    
T  17948807 aaattt 17948812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 343 - 446
Target Start/End: Original strand, 15070151 - 15070254
Alignment:
Q  343 ttagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 442  Q
    |||||||||| |||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  15070151 ttagtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcaccca 15070250  T
Q  443 aaaa 446  Q
    ||||    
T  15070251 aaaa 15070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 271 - 449
Target Start/End: Complemental strand, 14505700 - 14505525
Alignment:
Q  271 ttaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgta 370  Q
    ||||||| ||||||||||||||| |||||||  | | || |||||||||||||| | ||  ||||||| ||  |||||| || |||||||||||||||||    
T  14505700 ttaactccaaaggcttggtctagaggtaaaaaaacaagt-ttgaatccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgta 14505602  T
Q  371 attacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    || |||||||||| |  |||||| || ||||| |||||| |||||||||||||||||||||||||||| ||||||||||    
T  14505601 at-acctttgtaaatattctttgggcgcgaagatcttccgtgccttggactggggcaccatcccctca-cctaaaattt 14505525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 14496314 - 14496406
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  14496314 aaaggtttggtctagtggtaaaaagaaaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 24336642 - 24336718
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggac 420  Q
    |||| |||| |||||||||||||||||| ||| |||||||||| | |||||||| |||| |||||||||||||||||    
T  24336642 tagtccctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 19723267 - 19723443
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||  ||||||||| |||||||||||||||||||    
T  19723267 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 19723366  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19723367 tacctttgtaagtgctctttgagcccaaagatcttccctgccttggactggggcaccatcccctcaccctaaaattt 19723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 269 - 449
Target Start/End: Original strand, 11403953 - 11404133
Alignment:
Q  269 aattaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatg 368  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||  ||||||||||  |  ||||| ||| |||||||||||||||    
T  11403953 aattaactccaaagacttggtctagtggtaaaatgacaggtcttgaattcgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatg 11404052  T
Q  369 taattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11404053 taaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 11404133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 270 - 449
Target Start/End: Original strand, 4840093 - 4840272
Alignment:
Q  270 attaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgt 369  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||  ||||||||| ||||||||||||||||    
T  4840093 attaactccaaaggcttggtctagtggtaaaaagataggttttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 4840192  T
Q  370 aattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
     |||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4840193 cattaccattgtaagtgctctttgagtccaaaggtcttccctgccttggactagggcaccatcccctcaccctaaaattt 4840272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 22711465 - 22711641
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||  | | || |||||| ||||||||||||||||||     
T  22711465 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaa 22711564  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  22711565 tacctttgtaagtgctctttgagcccgaaggtcttccttgccttggactggggcaccatcccctcatcctaaaattt 22711641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 273 - 449
Target Start/End: Complemental strand, 32296815 - 32296639
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||| ||||||||||||||||| || |||||||||||  |||||||| ||||||| ||| |   ||||||||| | |||||||||||||||||    
T  32296815 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatttgagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaat 32296716  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32296715 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccatcccctcaccctaaaattt 32296639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 274 - 446
Target Start/End: Complemental strand, 28739736 - 28739564
Alignment:
Q  274 actcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaatt 373  Q
    |||| |||||||||||||||||||||||||| ||||||||||| | |||||||  |||||| ||| ||| ||||||||| ||||| | |||||||||| |    
T  28739736 actccaaaggcttggtctagtggtaaaatgacaggtcttgaattctagagaacctgggttcaagccccactagtgcctttggaggaaagtaaatgtaaat 28739637  T
Q  374 acctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  28739636 acctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgcagcaccatcccctcaccctaaaa 28739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 306 - 449
Target Start/End: Original strand, 29767177 - 29767318
Alignment:
Q  306 aggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc 405  Q
    |||||||||||| |||||||| |||| |||||| ||  ||||||||| | ||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  29767177 aggtcttgaatctgagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtc 29767274  T
Q  406 ttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29767275 ttccctgccttggactggggcaccatcccctcaccctaaaattt 29767318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 344 - 446
Target Start/End: Original strand, 17095577 - 17095679
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17095577 tagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 17095676  T
Q  444 aaa 446  Q
    |||    
T  17095677 aaa 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 293 - 449
Target Start/End: Original strand, 41553261 - 41553417
Alignment:
Q  293 gtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctcttt 392  Q
    |||||||||||||||||||||||| ||||||||| || |||||||  ||| || || ||| ||||| | |||||||||| |||||||||||||| |||||    
T  41553261 gtggtaaaatgataggtcttgaattcgagagaacccgagttcgagtcccactaatgtctttggaggaacgtaaatgtaaatacctttgtaagtgttcttt 41553360  T
Q  393 gagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  41553361 gagctcgaaggtcttccctgccttagactggagcaccatcccctcaccctaaaattt 41553417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 271 - 449
Target Start/End: Original strand, 11610234 - 11610412
Alignment:
Q  271 ttaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgta 370  Q
    ||||||| ||||| ||||||||||||||||| || ||||||||||||||||||| ||||| |||||||  |  ||||||||| ||||  |||||||| ||    
T  11610234 ttaactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagatctcggattcgagcctcgctagtgcctttggagaaaggtaaatata 11610333  T
Q  371 attacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    | || ||||||||||||| ||| |||||||||||||| | |  ||||||||||||||||||||||||||||||||||||    
T  11610334 aatatctttgtaagtgctgtttaagcccgaaggtcttacttatcttggactggggcaccatcccctcaccctaaaattt 11610412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 273 - 416
Target Start/End: Complemental strand, 24475172 - 24475029
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| |||||||||||||||| |||| |||| ||||||||||||||| |||| |||  ||||||||||  ||||||||| ||||||||||||||||||     
T  24475172 aactccaaaggcttggtctagtagtaagatgacaggtcttgaatccgatagaattcgaattcgagctccgctagtgcctttggagggaggtaaatgtaaa 24475073  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 416  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  24475072 tacctttgtaagtgttctttgagcccgaaggtctttcctgcctt 24475029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 30682795 - 30682970
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| |||||||||||||||||||| ||||  || |||||||| | ||||| | || |||||||| ||| | ||||||| |||| ||| |||||||||     
T  30682795 aactccaaaggcttggtctagtggtacaatggcagttcttgaattcaagagagcccgtgttcgagccccactggtgcctttggagagagataaatgtaaa 30682894  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  30682895 tacttttgtaagtgttctttgagcccgaagatcttccctgccttggact-gggcaccatcccctcaccttaaaattt 30682970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 354 - 449
Target Start/End: Original strand, 36261683 - 36261778
Alignment:
Q  354 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  36261683 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaattt 36261778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 27881165 - 27881044
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||  ||||||||| | ||||||||||||||||    
T  27881165 taactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaa 27881066  T
Q  372 ttacctttgtaagtgctctttg 393  Q
     |||||||||||||||||||||    
T  27881065 atacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 28021346 - 28021225
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||  ||||||||| | ||||||||||||||||    
T  28021346 taactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaa 28021247  T
Q  372 ttacctttgtaagtgctctttg 393  Q
     |||||||||||||||||||||    
T  28021246 atacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 21355087 - 21355004
Alignment:
Q  346 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 429  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 363 - 446
Target Start/End: Complemental strand, 11909509 - 11909426
Alignment:
Q  363 taaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 11909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 354 - 445
Target Start/End: Original strand, 43288109 - 43288200
Alignment:
Q  354 ggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    |||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43288109 ggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaa 43288200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 389 - 449
Target Start/End: Complemental strand, 27879620 - 27879560
Alignment:
Q  389 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaattt 27879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 389 - 449
Target Start/End: Complemental strand, 28019801 - 28019741
Alignment:
Q  389 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaattt 28019741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 445
Target Start/End: Complemental strand, 44741967 - 44741924
Alignment:
Q  402 ggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    |||||| |||||||||||||||||  ||||||||||||||||||    
T  44741967 ggtcttacctgccttggactggggtgccatcccctcaccctaaa 44741924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 273 - 446
Target Start/End: Complemental strand, 30054618 - 30054445
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||||||||||||||||||||| |  | ||||||||||||||||||| ||||||||||| ||  ||||||||| |||||||||||||||||||    
T  30054618 aactccaaaggcttggtctagtggtaaaaagtcaagtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 30054519  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30054518 tacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 30054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 272 - 448
Target Start/End: Complemental strand, 30370237 - 30370061
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||||||||||||||||||||| || | || |||||| ||||||||  ||||||||||| ||| ||||| ||| ||||||||||||||||||    
T  30370237 taactccaaaggcttggtctagtggtaaaaagacaagttttgaattcgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaa 30370138  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30370137 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccttaaaatt 30370061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 272 - 449
Target Start/End: Original strand, 45323961 - 45324138
Alignment:
Q  272 taactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaa 371  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||||||||||  |||||| ||| ||  |||||| || ||||||||||||||||||    
T  45323961 taactccaaaggcttggtctagtggtaaaacgacaggtcttgaatccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaa 45324060  T
Q  372 ttacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
     ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45324061 atacctttgtaagtgctccttgagcccgaaggtcttccctgctttggactggggcaccatcccctcaccctaaaattt 45324138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 279 - 446
Target Start/End: Original strand, 21090077 - 21090244
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||  ||||||| | |||||||||||||||||| ||| ||    
T  21090077 aaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacatt 21090176  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21090177 tgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaa 21090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 12025137 - 12025313
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| |||| ||||||||||||||||||  | || |||||||| |||||||||  |||||||||| ||||||||||||| ||||| |||||||||||||    
T  12025137 aactccaaagacttggtctagtggtaaaaatacagatcttgaattcgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaat 12025236  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12025237 tacctttgtaagtactatttgagcccgaaggtcttccctgccttggactggggcaccaccccctcaccctaaaattt 12025313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 273 - 449
Target Start/End: Original strand, 20014414 - 20014590
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| |||| |||||||||||||||||| || || |||||||||||||||||| ||||||||||  ||  |||| |||| |||||||||||||||||||    
T  20014414 aactccaaagtcttggtctagtggtaaaaagacagatcttgaatccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaat 20014513  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20014514 tacatttgtaaatgctctttgagcctgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaattt 20014590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 309 - 448
Target Start/End: Complemental strand, 30850980 - 30850841
Alignment:
Q  309 tcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttc 408  Q
    |||| ||||||||||||||||||||||||| || |||||| ||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||     
T  30850980 tcttaaatccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtcttt 30850881  T
Q  409 cctgccttggactggggcaccatcccctcaccctaaaatt 448  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  30850880 cctgtcttggactggggcaccatcccctcaccctaaaatt 30850841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 297 - 449
Target Start/End: Original strand, 4573359 - 4573511
Alignment:
Q  297 taaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagc 396  Q
    ||||| || ||||||||||||||||||||| ||||||||||| ||| || || ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  4573359 taaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagc 4573458  T
Q  397 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
     |||||||||||||||  |||||||| ||||| ||||||||||||||||||||    
T  4573459 tcgaaggtcttccctgttttggactgaggcactatcccctcaccctaaaattt 4573511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 344 - 451
Target Start/End: Original strand, 22024130 - 22024237
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22024130 tagtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatcccctcacccta 22024229  T
Q  444 aaatttat 451  Q
    ||||||||    
T  22024230 aaatttat 22024237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 43566481 - 43566646
Alignment:
Q  117 gctattttgccctttgtaacttgattgatcccacacaacaacctgctttcgataatataaaagagtaaattnnnnnnnntccccgttaacttatctc--- 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||       
T  43566481 gctattttgccctttgtaacttgattgatcccacacaacaacctgctttcgataatataaaagagtaaatt-aaaaaaatccccgttaacttatctcagg 43566579  T
Q  214 -----aggttcgaaccccgacacctcacttctcca-ttttttagcttctaaaaccacgtctaattaa 274  Q
         ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  43566580 ggccgaggttcgaaccccgacaccccacttctccatttttttagcttttaaaaccacgtctaattaa 43566646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 273 - 449
Target Start/End: Complemental strand, 33763430 - 33763254
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaat 372  Q
    ||||| ||||| |||||||||| |||||| || ||||||||||| ||||||||    ||||||||| ||  |||||||||  |||||||| |||||||||    
T  33763430 aactctaaaggtttggtctagtagtaaaaagacaggtcttgaattcgagagaatctaggttcgagccccgctagtgcctttagagggaggcaaatgtaat 33763331  T
Q  373 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    |||||||||||||| | |||||||||||| || |||||||||||| ||||||||| |||||||||||||||||||||    
T  33763330 tacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatcatcccctcaccctaaaattt 33763254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 14498182 - 14498079
Alignment:
Q  346 gtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaaa 14498083  T
Q  446 attt 449  Q
    ||||    
T  14498082 attt 14498079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 279 - 446
Target Start/End: Original strand, 35617942 - 35618104
Alignment:
Q  279 aaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctt 378  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||   | |||||||||| ||||||||||   ||||| |||||||||     |||    
T  35617942 aaaggtttggtctagtggtaaaatgacaggtcttgaatccaagagaacctagattcgagctccgttagtgcctttc-agggatgtaaatgtag----ctt 35618036  T
Q  379 tgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  35618037 tgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaa 35618104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 35371833 - 35371754
Alignment:
Q  361 ggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 440  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcacc 35371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 43566354 - 43566454
Alignment:
Q  1 ccatcaaccattgaattcattgagtttgtttgaaagtgaagaacgc---atgagagagtgatattgttagggttaagggagagtgtgcacttatatggga 97  Q
    |||||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43566354 ccatcaaccattgaattcattgagtttgtttgaaagtgaagggcgcgcaatgagagagtgatattgttagggttaagggagagtgtgcatttatatggga 43566453  T
Q  98 t 98  Q
    |    
T  43566454 t 43566454  T

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Target: chr1; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 344 - 449
Target Start/End: Complemental strand, 33762645 - 33762540
Alignment:
Q  344 tagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 443  Q
    |||||||||  |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  33762645 tagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcacccta 33762546  T
Q  444 aaattt 449  Q
    ||||||    
T  33762545 aaattt 33762540  T

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Target: chr1; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 474 - 556
Target Start/End: Original strand, 43566634 - 43566716
Alignment:
Q  474 cacgtctaattaatcttcaatctagttataggacattaattatgggaaatactatttaacgcgagaaaataatcccgaccttg 556  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43566634 cacgtctaattaatcttcactttagttgtaggacattaattatgggaaatactatttaacgcgagaaaataatcccgaacttg 43566716  T

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Target: chr1; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 306 - 446
Target Start/End: Complemental strand, 44438693 - 44438553
Alignment:
Q  306 aggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc 405  Q
    |||||||||||   |||||| | |||||||||||||  || |||||| |||||||||||||||||||||| |||||||||| ||||| |   ||||||||    
T  44438693 aggtcttgaatttaagagaatttgggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtc 44438594  T
Q  406 ttccctgccttggactggggcaccatcccctcaccctaaaa 446  Q
    |||||||||||| ||||||| ||||||||||| || |||||    
T  44438593 ttccctgccttgaactggggtaccatcccctcgccttaaaa 44438553  T

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Target: chr1; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 389 - 451
Target Start/End: Original strand, 17015192 - 17015254
Alignment:
Q  389 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttat 451  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaatttat 17015254  T

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Target: chr1; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 273 - 363
Target Start/End: Original strand, 15034411 - 15034501
Alignment:
Q  273 aactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggt 363  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||| ||||| | ||||||||| | | ||||||||| ||||||||||    
T  15034411 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 445
Target Start/End: Complemental strand, 17291897 - 17291828
Alignment:
Q  375 cctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 445  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||| |||   ||||||| |||||||||    
T  17291897 cctttgtaaatgctctttgaaccagaaggtctt-cctgccttggactagggtgacatccccgcaccctaaa 17291828  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 575
Target Start/End: Original strand, 43566717 - 43566746
Alignment:
Q  546 tcccgaccttgaattctactctgccctttg 575  Q
    ||||||||||||||||||||||||||||||    
T  43566717 tcccgaccttgaattctactctgccctttg 43566746  T

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Target: scaffold0021 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 270 - 449
Target Start/End: Complemental strand, 107870 - 107692
Alignment:
Q  270 attaactcaaaaggcttggtctagtggtaaaatgataggtcttgaatccgagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgt 369  Q
    |||||||| |||| |||||||||||||||||| || ||||||||||| ||||||||| || |||||||| ||  ||||||||| ||||||||||||||||    
T  107870 attaactccaaagacttggtctagtggtaaaaagacaggtcttgaattcgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgt 107771  T
Q  370 aattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  107770 aattacctttgtaagtgctctttgagcccgaaggtctaccctgccttggactggggcaccatcccctca-cctaaaattt 107692  T

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Target: scaffold0691 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 319 - 424
Target Start/End: Complemental strand, 7099 - 6994
Alignment:
Q  319 gagagaactcgggttcgagctccattagtgccttcggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 418  Q
    |||||||  ||||||||||  ||  |||||| || ||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttgg 7000  T
Q  419 actggg 424  Q
    ||||||    
T  6999 actggg 6994  T

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