View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_low_11 (Length: 526)
Name: NF11778_low_11
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_11 |
 | |
|
| [»] scaffold0299 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 6682281 - 6681786
Alignment:
| Q |
1 |
agcaccaaactgttaatttgtttggttgattttgatatacttcatatgacagagttaggagcctaaatattgttgaagaatcttgaatgaaaagccatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6682281 |
agcaccaaactgttaatttgtttgtttgattttgatatacttcatatgacagagttaggagcctaaatattgttgaagaatcttgaatgaaaagccatca |
6682182 |
T |
|
| Q |
101 |
atgtggcacttcaaatatgtaaactaatgtaggacagtag---caatgaaaacaaagaagaagnnnnnnngagacttgaattgaatagtcagagcttagc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
6682181 |
atgtggcacttcaaatatgtaaactaatgtaggacagtagaagcaatgaaaaaaaaga--------------gacttgaattgaatagtcagagcttagc |
6682096 |
T |
|
| Q |
198 |
tctcaatccttgaatatacatacattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaatgagacttgaattgaatagttggagctttg |
297 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6682095 |
tctcaatcattgaatatacat----tcacaacaatacaaaattgaatctctaatttcaagtctcttaaaatgagacttgaattgaatggttggagctttg |
6682000 |
T |
|
| Q |
298 |
cctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6681999 |
cctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacat |
6681900 |
T |
|
| Q |
398 |
aatcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgaactgtttacgcttacgcttcaacgaaatttaatatgcttcatcaaag |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6681899 |
aatcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgagctgtttacgctt--gcttcaacgaaatttaatatgcttcatcaaag |
6681802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 217 - 381
Target Start/End: Original strand, 6771257 - 6771416
Alignment:
| Q |
217 |
atacattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaatgagacttgaattgaatagttggagctttgcctctcaaccattgaatat |
316 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
6771257 |
atacattcacaaaaatacaaaattgattttctaatttcaagtctcttaaaatgaga-----attgaataattggagcttagcctctcaaccattgaatat |
6771351 |
T |
|
| Q |
317 |
acttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaa |
381 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6771352 |
acttttaaaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaa |
6771416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 6765026 - 6765105
Alignment:
| Q |
217 |
atacattcacaacaataaaaaattgaatctctaatttc-aagtctcttaaaatgagacttgaattgaatagttggagctt |
295 |
Q |
| |
|
||||||||| ||||||| |||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6765026 |
atacattcaaaacaatacaaaattgattttctaatatctaagtctcttaaaatgagacttgaattgaatagttggagctt |
6765105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 6771210 - 6771249
Alignment:
| Q |
84 |
tgaatgaaaagccatcaatgtggcacttcaaatatgtaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6771210 |
tgaatgaaaagccatcaatgtggcacttcaaatatttaaa |
6771249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 506
Target Start/End: Complemental strand, 6670860 - 6670820
Alignment:
| Q |
466 |
gcttcaacgaaatttaatatgcttcatcaaagataataaaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
6670860 |
gcttcaacgaaatttaatatgcttcatcaaagctgataaaa |
6670820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 6671037 - 6670987
Alignment:
| Q |
308 |
attgaatatacttttacaacaacacaaaattgaatctcttattttaagaga |
358 |
Q |
| |
|
||||||||||| || ||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
6671037 |
attgaatatacattcacaacaatacaaaattgattctcttgttttaagaga |
6670987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 6764982 - 6765010
Alignment:
| Q |
87 |
atgaaaagccatcaatgtggcacttcaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6764982 |
atgaaaagccatcaatgtggcacttcaaa |
6765010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 217 - 484
Target Start/End: Complemental strand, 17714 - 17452
Alignment:
| Q |
217 |
atacattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaatgagacttgaattgaatagttggagctttgcctctcaaccattgaatat |
316 |
Q |
| |
|
||||||||| ||||||| |||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
17714 |
atacattcataacaatacaaaattgattttctaatttcaagtctcttaaaatgaga-----atttaatagttggagctttgactctctaccattgaataa |
17620 |
T |
|
| Q |
317 |
acttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacataatcaaatttatatacaca |
416 |
Q |
| |
|
| || |||||||||||||||||| ||||| |||||||||| || |||||| |||||||||||||||||| |||||||||||| |||||||||||||| | |
|
|
| T |
17619 |
atattcacaacaacacaaaattgagtctctcattttaagagtatgaataatgagcctattcctaacctatatatgttacataaacaaatttatatacaga |
17520 |
T |
|
| Q |
417 |
aaaggaaagattaaaatcacaacacttatgtcgaactgtttacgcttacgcttcaacgaaatttaata |
484 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17519 |
aaaggaaggatgaaaattacaacacttatgtcgaactgtttacgcttaggcttcaacgaaatttaata |
17452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 299 - 484
Target Start/End: Complemental strand, 17413 - 17228
Alignment:
| Q |
299 |
ctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctattcctaacctatgtatgttacata |
398 |
Q |
| |
|
||||| ||||||||||| | || |||||||||||||||||| ||||| |||||||||| || |||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
17413 |
ctctctaccattgaataaatattcacaacaacacaaaattgagtctctcattttaagagtatgaataatgagcctattcctaacctatatatgttacata |
17314 |
T |
|
| Q |
399 |
atcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgaactgtttacgcttacgcttcaacgaaatttaata |
484 |
Q |
| |
|
| |||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17313 |
aacaaatttatatacagaaaaggaaggatgaaaattacaacacttatgtcgaactgtttacgcttatgcttcaacgaaatttaata |
17228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 17761 - 17722
Alignment:
| Q |
84 |
tgaatgaaaagccatcaatgtggcacttcaaatatgtaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17761 |
tgaatgaaaagccatcaatgtggcacttcaaatatttaaa |
17722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 173 - 510
Target Start/End: Original strand, 36845586 - 36845932
Alignment:
| Q |
173 |
ttgaattgaatagtcagagcttagctctcaatccttgaatatacatacattcacaacaataaaaaattgaatctctaatttcaagtctct-taaaatgag |
271 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | || ||| ||||||| ||||||||| ||| |||| | |||||||||||| |||| |||||||| |
|
|
| T |
36845586 |
ttgaattgaatagttggagcttagctctcaaccatttaat----atacatttacaacaatacaaacttgattttctaatttcaagcctctcaaaaatgag |
36845681 |
T |
|
| Q |
272 |
acttgaattgaatagttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagag-aatcaataataag |
370 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
36845682 |
acttaaattgaatagttggagcttaggctctcaaccattgaatatatattcacaacaacacaaaattgaatctcttattttaagagaaatgaataataag |
36845781 |
T |
|
| Q |
371 |
cctatt-------cctaacctatgtatgt---tacataatcaaatttatatacacaaaaggaaagattaaaatcacaacac---ttatgtcgaactgttt |
457 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||| |
|
|
| T |
36845782 |
gctattcctaacccctaacctatgtatatacata-ataatcaaatttatatacacaaaaggaaagatgaaaatcacaacactaattacgttaaactgttt |
36845880 |
T |
|
| Q |
458 |
acgcttacgcttcaacgaaatttaatatgcttcatcaaagataataaaatttg |
510 |
Q |
| |
|
|| |||| ||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
36845881 |
acactta-gcttcaatgaaatttaaaatgcttcatcaaagctaataaaatttg |
36845932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 272 - 513
Target Start/End: Original strand, 6160127 - 6160356
Alignment:
| Q |
272 |
acttgaattgaatagttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagc |
371 |
Q |
| |
|
|||||||||| ||||| |||||| || ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6160127 |
acttgaattgtgtagtttgagcttagc-tctcaaccattgaatatacattcacaacaacacaaaattgaatctcttattttaagagaatgaataataagg |
6160225 |
T |
|
| Q |
372 |
ctattcctaacctatgtatgttacataatcaaatttatatacacaaaaggaaagattaaaatcacaacacttatgtcgaactgtttacgcttacgcttca |
471 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||| || |||| |||| | |
|
|
| T |
6160226 |
ctattcctaacctatgtat-atacataatcaaatttacatacacaaaaggaaagatgaaaagcacaacactta--------tgttgacactta-gcttta |
6160315 |
T |
|
| Q |
472 |
acgaaatttaatatgcttcatcaaagataataaaatttggca |
513 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6160316 |
acgaaatttaata-gcttcatcaaagttaataaaatttggca |
6160356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 6160059 - 6160112
Alignment:
| Q |
84 |
tgaatgaaaagccatcaatgtggcacttcaaatatgtaaactaatgtaggacag |
137 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || |||| | |||||| |||| |
|
|
| T |
6160059 |
tgaatgtaaagccatcaatgtggcacttcaaacatttaaattgatgtagaacag |
6160112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 6160127 - 6160205
Alignment:
| Q |
171 |
acttgaattgaatagtcagagcttagctctcaatccttgaatatacatacattcacaacaataaaaaattgaatctctaattt |
253 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| | |||||||||| ||||||||||| | |||||||||||||| |||| |
|
|
| T |
6160127 |
acttgaattgtgtagtttgagcttagctctcaaccattgaatatac----attcacaacaacacaaaattgaatctcttattt |
6160205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 220 - 457
Target Start/End: Complemental strand, 46524755 - 46524508
Alignment:
| Q |
220 |
cattcacaacaataaaaaattgaatctctaatttcaagtctcttaaaa---tgagacttgaattgaatagttggagctttgcctctcaaccattgaa--t |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||| || |||||||||||| | ||||||||||||||| | |
|
|
| T |
46524755 |
cattcacaacaatacaaaattgaatctctaatttcaagtctcttaaaaatgggagacataaatagagtagttggagcttaggctctcaaccattgaatgt |
46524656 |
T |
|
| Q |
315 |
atacttttacaacaacacaaaattgaatctcttattttaagagaatcaataataagcctat-----tcctaacctatgtatgttacataatcaaatttat |
409 |
Q |
| |
|
||| || ||| ||| |||||||||| |||||| |||||||||| | ||| ||||| |||| |||||| |||||||| |||||||||||| |||| |
|
|
| T |
46524655 |
atatattcacagcaatacaaaattgattctcttgttttaagagattaaat-ataaggctattgcaatcctaatctatgtat-atacataatcaaaattat |
46524558 |
T |
|
| Q |
410 |
ata--cacaaaaggaaagattaaaatcacaacacttatgtcgaactgttt |
457 |
Q |
| |
|
||| || ||||||||| | |||||| ||||||||| || ||||||||| |
|
|
| T |
46524557 |
atacccataaaaggaaacttgaaaatctcaacacttacgttgaactgttt |
46524508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 46524808 - 46524722
Alignment:
| Q |
264 |
aaaatgagacttgaattgaatagttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattt |
351 |
Q |
| |
|
||||||| |||| ||||||| |||| |||||| || |||| |||||||||| | | || ||||||| |||||||||||||||| |||| |
|
|
| T |
46524808 |
aaaatgaaacttcaattgaagagttagagcttagc-tctccaccattgaatttgcattcacaacaatacaaaattgaatctctaattt |
46524722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 49884330 - 49884268
Alignment:
| Q |
393 |
tacataatcaaatttatatacacaaaa--ggaaagattaaaatcacaacacttatgtcgaact |
453 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||| |||||| |||||||||||| ||||| |
|
|
| T |
49884330 |
tacatgatcaaaattatatacacaaaaaaggaaagatgaaaatctcaacacttatgttgaact |
49884268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 496
Target Start/End: Complemental strand, 49884244 - 49884214
Alignment:
| Q |
466 |
gcttcaacgaaatttaatatgcttcatcaaa |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49884244 |
gcttcaacgaaatttaatatgcttcatcaaa |
49884214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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