View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_low_12 (Length: 524)
Name: NF11778_low_12
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 219 - 507
Target Start/End: Original strand, 33411237 - 33411525
Alignment:
| Q |
219 |
caaatttggaattttttgatcataaacattcttcctaatagatccaatcacttactctataaggttcacatggttagcctctttcttttccttcagttca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33411237 |
caaatttggaattttttgatcataaacattcttcctaatagatccaatcacttactctataaggttcacatggttagcctctttcttttccttcagttca |
33411336 |
T |
|
| Q |
319 |
ttggcaagcatgtctatagaatccgaaacttcagccctatatacataaaaccttgtaacaaacgcgaagaaagccaagttcaagaagttcaacactgcaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
33411337 |
ttggcaagcatgtctatagaatccgaaacttcagccctatatacataaaaccttgtaacaaacgcgaagaaagccaagttcaagaagttcaacaccgcga |
33411436 |
T |
|
| Q |
419 |
aaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctttatgaccatgttcctgagttatatgcgatact |
507 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33411437 |
aaaacgcatagtagtaatcaagatgagaatcattcagattgttcaaaatccaccctttatgaccatgttcctgagttatatgcgatact |
33411525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 33411043 - 33411244
Alignment:
| Q |
1 |
tgattttcagcaaagcctactatgtgaattctcaaaattcaaaaacaataacaatatggctgcactggacaaatgatcacacactggaatggattactct |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33411043 |
tgattttcagcaa-gcctactatgtgaattctcaaaattcaaaaacaataacaatatggctgcactggacaaatgatcacacactggaatggattcctct |
33411141 |
T |
|
| Q |
101 |
aactaacttgattagaattatgttctaaagtggctttccaatcaccaaaaccatcacacacaaaatatatacataattatagttctttggccatccaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33411142 |
aactaacttgattagaattatgttctaaagtggctttccagtcaccaaaaccatcacacacaaaatatatacataattatagttctttggccatccaaat |
33411241 |
T |
|
| Q |
201 |
ttg |
203 |
Q |
| |
|
||| |
|
|
| T |
33411242 |
ttg |
33411244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 418 - 490
Target Start/End: Complemental strand, 15730299 - 15730227
Alignment:
| Q |
418 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctttatgaccatgttcct |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
15730299 |
aaaaatgcatagtagtaatcaagatgagaagcattaagattattcaaaatccaccctttgtgaccatgttcct |
15730227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 418 - 490
Target Start/End: Complemental strand, 15737902 - 15737830
Alignment:
| Q |
418 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctttatgaccatgttcct |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
15737902 |
aaaaatgcatagtagtaatcaagatgagaagcattaagattattcaaaatccaccctttgtgaccatgttcct |
15737830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 15780001 - 15779944
Alignment:
| Q |
418 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctt |
475 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| || ||||| ||||||||||||| |
|
|
| T |
15780001 |
aaaaatgcgtagtagtaatcaagatgagaagcatttaggttgttcaaaatccaccctt |
15779944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 474
Target Start/End: Complemental strand, 15755996 - 15755940
Alignment:
| Q |
418 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccct |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || || |||||||||||| |
|
|
| T |
15755996 |
aaaaatgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccct |
15755940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 474
Target Start/End: Complemental strand, 15766865 - 15766809
Alignment:
| Q |
418 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccct |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || || |||||||||||| |
|
|
| T |
15766865 |
aaaaatgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccct |
15766809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University