View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_low_14 (Length: 496)
Name: NF11778_low_14
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_14 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Original strand, 15012083 - 15012551
Alignment:
| Q |
17 |
ataacacaattgtctaatctacatttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012083 |
ataacacaattgtctaatctacatttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaa |
15012182 |
T |
|
| Q |
117 |
tggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggca |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012183 |
tggaagtaaataagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggca |
15012282 |
T |
|
| Q |
217 |
acaaccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012283 |
acaaccttcacaaagtgttacggacctgagacttgatacgatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaa |
15012382 |
T |
|
| Q |
317 |
gaggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
15012383 |
gaggtggcatcgatgataaggattgcagttgcttgcttaacagaaagcccgctttctcgccctaccatggagcaggtctgcaggcagtttgtaatgtcat |
15012482 |
T |
|
| Q |
417 |
aatcatcttcaaatatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatgcttctct |
485 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012483 |
aatcatcttcaaatatatattgtctcatatatatagcctaaatgttgttttcaccaaatatgcttctct |
15012551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 15003195 - 15003660
Alignment:
| Q |
17 |
ataacacaattgtctaatctacatttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaa |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15003195 |
ataacacaattgtctactctacatttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaa |
15003294 |
T |
|
| Q |
117 |
tggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggca |
216 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15003295 |
tggaagtaaatgagaaatgtgatgtgtttagttttgggatattaaccttggaaatgctttttggaaagcaccctggagatattgtaacttatttgtggca |
15003394 |
T |
|
| Q |
217 |
acaaccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaa |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15003395 |
acaaccttcgcaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaa |
15003494 |
T |
|
| Q |
317 |
gaggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
15003495 |
gaggtggcatcgatgataaggattgcagttgcttgcttaactgaaagcccacattctcgccctactatggagcaggtctgcaggcagtttttaatgtcat |
15003594 |
T |
|
| Q |
417 |
aatcatcttcaaatatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatgcttc |
482 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15003595 |
aatcatcttcaaatatatagtgtctcatacatatagcctgaatgttgttttcaccaaatatgcttc |
15003660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 481
Target Start/End: Original strand, 15038097 - 15038557
Alignment:
| Q |
21 |
cacaattgtctaatctacatttcatgttttgtttatggaattatattttacacacgataac-tcttctttgaatgtttacagaacttgcatacacaatgg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||| ||| ||| | ||||||||||||||||||||||| |
|
|
| T |
15038097 |
cacaattgtctaatctacatttcatgttttgtttatggaatcctatttttcacatgataaaatctt-tttaaatttctacagaacttgcatacacaatgg |
15038195 |
T |
|
| Q |
120 |
aagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaaca |
219 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15038196 |
aagtaaatgagaaatgtgatgtgtatggttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcagca |
15038295 |
T |
|
| Q |
220 |
accttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagag |
319 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15038296 |
accttcacaaagtgttgtggacctgagacttgatactatgccattgatagataagttagaccaacgtctccctcatcctacaaataccattgttcaagaa |
15038395 |
T |
|
| Q |
320 |
gtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
15038396 |
gtggcatcgatgataaggattgcagttgcttgcttaactgaaagcccgatttctcgccctaccatggagcaggtctgcaggcagtttgtaatgtcataat |
15038495 |
T |
|
| Q |
420 |
catcttcaaatatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatgctt |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15038496 |
catcttcaaatatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatgctt |
15038557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 97 - 450
Target Start/End: Original strand, 15033594 - 15033947
Alignment:
| Q |
97 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15033594 |
tacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtttagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
15033693 |
T |
|
| Q |
197 |
attgtaacttatttgtggcaacaaccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15033694 |
attgtaacttatttgtggcaacaaccttcacaaagtgttatggacatgagacctgatactatgcaattgatagataagttggaccagcgtgtccctcatc |
15033793 |
T |
|
| Q |
297 |
ccacaaaaaccattgttcaagaggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctg |
396 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15033794 |
ccacaaataccattgttcaagaagtggcatcgatgataaggattgcagttgcttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctg |
15033893 |
T |
|
| Q |
397 |
caggcaatttgtaacgtcataatcatcttcaaatatatattgtctcgtatatat |
450 |
Q |
| |
|
||| || ||||||| |||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
15033894 |
cagacagtttgtaatgtcataatcatcttcagatacatattgtctcatatatat |
15033947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 429
Target Start/End: Original strand, 15041661 - 15042069
Alignment:
| Q |
22 |
acaattgtctaatctacatttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaa |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||| | |||| ||||| |||| ||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
15041661 |
acaattgttaaatctacatttcatgttttgtttatggaatcctattattcacatgataaatctt-tttaaatttctacagaacttgcatacacaatggaa |
15041759 |
T |
|
| Q |
122 |
gtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaac |
221 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15041760 |
gtaa-tgagaaatgtgatgtgtatagttttggggtattaaccttggaaatacattttggaaagcaccctggagatattgtaacttatttgtggcaacaac |
15041858 |
T |
|
| Q |
222 |
cttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaa---accattgttcaaga |
318 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||| || |||||||| |||| ||| ||||| |||||||||| ||| ||||| | ||||||||| | |
|
|
| T |
15041859 |
cttcacaaagtgctacggacctgacaattgatactattccattgatggatatgttagaccaacgtctccctcgtcctacaaatgacatcattgttcacaa |
15041958 |
T |
|
| Q |
319 |
ggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
15041959 |
ggtggcatcgatgataaggattgcagttgcttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaagcagtttgtaatgtcataa |
15042058 |
T |
|
| Q |
419 |
tcatcttcaaa |
429 |
Q |
| |
|
| ||||||||| |
|
|
| T |
15042059 |
ttatcttcaaa |
15042069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 429
Target Start/End: Complemental strand, 14521656 - 14521250
Alignment:
| Q |
21 |
cacaattgtctaatctacatttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatgga |
120 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14521656 |
cacaattgtctagtctatatttcatgttta-tttacggaacc-tatttttcacacgataactcttctttaaatgtttacagaacttgcatacacaatgga |
14521559 |
T |
|
| Q |
121 |
agtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaa |
220 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
14521558 |
agtaaatgagaaatgtgatgtgtatagttttgggattttaaccttggaaatacttttcggaaagcaccctggagatgttgtaacttctttgtggcaacaa |
14521459 |
T |
|
| Q |
221 |
ccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagagg |
320 |
Q |
| |
|
||||| ||||||| | ||||||| |||||| | ||||||||||| ||||||||||| || |||||||||| ||| ||| | |||||||||||||||| |
|
|
| T |
14521458 |
tcttcaaaaagtgtcatggacctggaacttgaatctatgccattgatggataagttggatcaacgtctccctcgtccaacagataccattgttcaagagg |
14521359 |
T |
|
| Q |
321 |
tggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataatc |
420 |
Q |
| |
|
||||||||| ||||||||||||| || |||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| |
|
|
| T |
14521358 |
tggcatcgacgataaggattgcaactgcttgcttgactgaaaccccacgttctcgccctaccatggagcaggtctgcaagcagcttgtaatgtcttaatc |
14521259 |
T |
|
| Q |
421 |
atcttcaaa |
429 |
Q |
| |
|
|| |||||| |
|
|
| T |
14521258 |
atattcaaa |
14521250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 76 - 429
Target Start/End: Complemental strand, 14531703 - 14531350
Alignment:
| Q |
76 |
gataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactt |
175 |
Q |
| |
|
|||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
14531703 |
gataactcttttttaaatttctacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattgaccttggaaatactt |
14531604 |
T |
|
| Q |
176 |
tttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagt |
275 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||| | ||||||||||||||||||| ||| ||| ||||||||| |||||||||||||| | | |
|
|
| T |
14531603 |
tttggaaaacaccctggagatgttgtaacttctttgtggaagcaaccttcacaaagtgttatagacgtgacacttgataccatgccattgatagagagat |
14531504 |
T |
|
| Q |
276 |
tggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcg |
375 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||| | ||||| | ||||||||| |
|
|
| T |
14531503 |
tggaccaacgtctccctcatcccacaaataccattgttcaagaggtggcatctgtggtaaggattgcagttgcttgcttagcagaaagtctgcgttctcg |
14531404 |
T |
|
| Q |
376 |
ccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaa |
429 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
14531403 |
ccctaccatggagcatgtctgcaaacagtttgtaatgtcataatcatcttcaaa |
14531350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 14468895 - 14469001
Alignment:
| Q |
96 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||| ||| ||||||| || |||||||| |
|
|
| T |
14468895 |
ttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttggagtattaaccttggaaatgcttcttggaaaacatcctggaga |
14468994 |
T |
|
| Q |
196 |
tattgta |
202 |
Q |
| |
|
|||||| |
|
|
| T |
14468995 |
cattgta |
14469001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 14505148 - 14505253
Alignment:
| Q |
97 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
196 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||| |||||| | ||||||||||| ||||||| || |||||||| |
|
|
| T |
14505148 |
tacagaacttgcatatacaatggaagtaaatgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagac |
14505247 |
T |
|
| Q |
197 |
attgta |
202 |
Q |
| |
|
|||||| |
|
|
| T |
14505248 |
attgta |
14505253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 14483892 - 14483998
Alignment:
| Q |
96 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
195 |
Q |
| |
|
||||||||||| |||||||||| | ||||| ||||| || ||||| ||||||||||| |||||| | ||||||||||| ||||||| || |||||||| |
|
|
| T |
14483892 |
ttacagaacttacatacacaataaacgtaaacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggaga |
14483991 |
T |
|
| Q |
196 |
tattgta |
202 |
Q |
| |
|
||||||| |
|
|
| T |
14483992 |
tattgta |
14483998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 482
Target Start/End: Complemental strand, 14521233 - 14521180
Alignment:
| Q |
429 |
atatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatgcttc |
482 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
14521233 |
atatatattgtctcatatatatagccagaatgttgtttttaccaaatatgcttc |
14521180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 15018205 - 15018246
Alignment:
| Q |
21 |
cacaattgtctaatctacatttcatgttttgtttatggaatt |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15018205 |
cacaattgtctaatctacatttcatgttttgtttatgaaatt |
15018246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 15025323 - 15025364
Alignment:
| Q |
21 |
cacaattgtctaatctacatttcatgttttgtttatggaatt |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15025323 |
cacaattgtctaatctacatttcatgttttgtttatgaaatt |
15025364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 32 - 478
Target Start/End: Original strand, 13880 - 14337
Alignment:
| Q |
32 |
aatctacatttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgaga |
131 |
Q |
| |
|
||||||||| ||||| | | |||| |||| ||||||| ||| |||||||||| ||| ||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
13880 |
aatctacatatcatgctatttttacagaatcatatttttcacgtgataactctt-tttaaatttccacagaacttgcatacacaatggaagtaaatgaga |
13978 |
T |
|
| Q |
132 |
aatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaag |
231 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
13979 |
aatgtgatgtgtatagttttgggatattaaccttggaaatactttatggaaagcaccctggagatgttgtaacttctttgtggcagcaagcttcacaaag |
14078 |
T |
|
| Q |
232 |
tgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatg |
331 |
Q |
| |
|
||||| |||| ||| ||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| | || || |
|
|
| T |
14079 |
tgttatggacgtgacacttgatcctatgccattgatagataaattggaccaacgtctccctcatcccacaaataccattgttcaagaggtgtcttctgtg |
14178 |
T |
|
| Q |
332 |
ataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaa-- |
429 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||| ||| |||||| |||||| ||| |||||| |
|
|
| T |
14179 |
ctaaggattgcagttgcttgcataacaaaaagcccgtgttctcgccctaccatggagcaggtctgcaagcagcttgtaatgtcatagccatgttcaaagg |
14278 |
T |
|
| Q |
430 |
----------tatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatg |
478 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| || || ||||||| |
|
|
| T |
14279 |
gtcagttacatatatattgtctcatatatatagcctaaatattgtgtttacaaaatatg |
14337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 7570 - 7676
Alignment:
| Q |
96 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7570 |
ttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttgggatattaaccttggaaatactttttggaaagcatcctggaga |
7669 |
T |
|
| Q |
196 |
tattgta |
202 |
Q |
| |
|
|||||| |
|
|
| T |
7670 |
cattgta |
7676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 32 - 478
Target Start/End: Original strand, 14523 - 14980
Alignment:
| Q |
32 |
aatctacatttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgaga |
131 |
Q |
| |
|
||||||||| ||||| | | |||| |||| ||||||| ||| |||||||||| ||| ||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
14523 |
aatctacatatcatgctatttttacagaatcatatttttcacgtgataactctt-tttaaatttccacagaacttgcatacacaatggaagtaaatgaga |
14621 |
T |
|
| Q |
132 |
aatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaag |
231 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
14622 |
aatgtgatgtgtatagttttgggatattaaccttggaaatactttatggaaagcaccctggagatgttgtaacttctttgtggcagcaagcttcacaaag |
14721 |
T |
|
| Q |
232 |
tgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatg |
331 |
Q |
| |
|
||||| |||| ||| ||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| | || || |
|
|
| T |
14722 |
tgttatggacgtgacacttgatcctatgccattgatagataaattggaccaacgtctccctcatcccacaaataccattgttcaagaggtgtcttctgtg |
14821 |
T |
|
| Q |
332 |
ataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaa-- |
429 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||| ||| |||||| |||||| ||| |||||| |
|
|
| T |
14822 |
ctaaggattgcagttgcttgcataacaaaaagcccgtgttctcgccctaccatggagcaggtctgcaagcagcttgtaatgtcatagccatgttcaaagg |
14921 |
T |
|
| Q |
430 |
----------tatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatg |
478 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| || || ||||||| |
|
|
| T |
14922 |
gtcagttacatatatattgtctcatatatatagcctaaatattgtgtttacaaaatatg |
14980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 8214 - 8320
Alignment:
| Q |
96 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8214 |
ttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttgggatattaaccttggaaatactttttggaaagcatcctggaga |
8313 |
T |
|
| Q |
196 |
tattgta |
202 |
Q |
| |
|
|||||| |
|
|
| T |
8314 |
cattgta |
8320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 17028971 - 17029073
Alignment:
| Q |
100 |
agaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
17028971 |
agaacttgcatacacaatggaagtaaatgagagatgtgatgtgtatagtttcggggtattaaccttggaaatactttttggaaagcatcctggagacatt |
17029070 |
T |
|
| Q |
200 |
gta |
202 |
Q |
| |
|
||| |
|
|
| T |
17029071 |
gta |
17029073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 17559407 - 17559509
Alignment:
| Q |
100 |
agaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
17559407 |
agaacttgcatacacaatggaagtaaatgagagatgtgatgtgtatagtttcggggtattaaccttggaaatactttttggaaagcatcctggagacatt |
17559506 |
T |
|
| Q |
200 |
gta |
202 |
Q |
| |
|
||| |
|
|
| T |
17559507 |
gta |
17559509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 15664273 - 15664171
Alignment:
| Q |
97 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||| | |||||||||| | |||||| ||||| |||||| |
|
|
| T |
15664273 |
tacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttggggtattggcattggaaataccatatggaaaacacccaggagat |
15664174 |
T |
|
| Q |
197 |
att |
199 |
Q |
| |
|
||| |
|
|
| T |
15664173 |
att |
15664171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 15676103 - 15676001
Alignment:
| Q |
97 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
196 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||| || ||||| |||||||||||||||||| | ||||||||||| | |||||| ||||| |||||| |
|
|
| T |
15676103 |
tacagaatttgcatacacaatggaagtgaatgtgaagtgtgatgtgtatagttttgggatattagcattggaaatactatatggaaaacacccgggagat |
15676004 |
T |
|
| Q |
197 |
att |
199 |
Q |
| |
|
||| |
|
|
| T |
15676003 |
att |
15676001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 17825063 - 17824966
Alignment:
| Q |
97 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggag |
194 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||||| ||||| |||||||||||| ||||| | ||||||| |||||||||||| |||||||||| |
|
|
| T |
17825063 |
tacagaatatgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaaaactttttggaaaacaccctggag |
17824966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 16173744 - 16173850
Alignment:
| Q |
96 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
195 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||| || ||||| ||||||||||| ||||| | ||||||||||| |||||||| || |||||||| |
|
|
| T |
16173744 |
ttacagaacttgcatacacaacgaaagtaaccgagaagtgtgatgtgtatagttttggagtattagcattggaaatactgtttggaaaacatcctggaga |
16173843 |
T |
|
| Q |
196 |
tattgta |
202 |
Q |
| |
|
| ||||| |
|
|
| T |
16173844 |
tgttgta |
16173850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 16103985 - 16104084
Alignment:
| Q |
97 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
196 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| || ||||| |||||||| ||| ||||| | ||||||| |||||||||||| || || |||||| |
|
|
| T |
16103985 |
tacagaacttgcatacacaacaaaagtgaatgagaagtgtgatgtgtatagtttcggggtattagcattggaaacactttttggaaaacatcccggagat |
16104084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 14607056 - 14607155
Alignment:
| Q |
97 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
196 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| || ||||| || |||||||| ||||| | |||||||||||||||||||| || || |||||| |
|
|
| T |
14607056 |
tacagaacttgcatacacaacaaaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaatactttttggaaaacatcccggagat |
14607155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 16026230 - 16026329
Alignment:
| Q |
97 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
196 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| || ||||| || |||||||| ||||| | |||||||||||||||||||| || || |||||| |
|
|
| T |
16026230 |
tacagaacttgcatacacaacaaaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaatactttttggaaaacatcccggagat |
16026329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 31059309 - 31059349
Alignment:
| Q |
113 |
acaatggaagtaaatgagaaatgcgatgtatatagttttgg |
153 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
31059309 |
acaatggaagtgaatgagaaatgtgatgtatacagttttgg |
31059349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 31160127 - 31160167
Alignment:
| Q |
113 |
acaatggaagtaaatgagaaatgcgatgtatatagttttgg |
153 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
31160127 |
acaatggaggtgaatgagaaatgtgatgtatatagttttgg |
31160167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 31242230 - 31242270
Alignment:
| Q |
113 |
acaatggaagtaaatgagaaatgcgatgtatatagttttgg |
153 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
31242230 |
acaatggaggtgaatgagaaatgtgatgtatatagttttgg |
31242270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 13424 - 13323
Alignment:
| Q |
100 |
agaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatatt |
199 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||| || ||||| |||||||||||| |||| | | |||||||||| | |||||| |||||||||||||| |
|
|
| T |
13424 |
agaatttgcatacactatggaagtgaatgagaagtgtgatgtgtatagttttggggtatt-agcatggaaatactatatggaaaaaaccctggagatatt |
13326 |
T |
|
| Q |
200 |
gta |
202 |
Q |
| |
|
||| |
|
|
| T |
13325 |
gta |
13323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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