View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_low_18 (Length: 451)

Name: NF11778_low_18
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_low_18
NF11778_low_18
[»] chr5 (22 HSPs)
chr5 (258-355)||(2259388-2259485)
chr5 (272-353)||(21711531-21711612)
chr5 (275-354)||(15614744-15614823)
chr5 (258-339)||(24765508-24765589)
chr5 (268-352)||(19068688-19068772)
chr5 (267-323)||(21027039-21027095)
chr5 (272-354)||(4120523-4120605)
chr5 (266-339)||(22602038-22602111)
chr5 (268-353)||(35341889-35341973)
chr5 (266-339)||(39324353-39324426)
chr5 (277-353)||(21877894-21877970)
chr5 (276-344)||(28637626-28637694)
chr5 (273-339)||(28682764-28682830)
chr5 (268-353)||(5781073-5781158)
chr5 (268-323)||(11725648-11725703)
chr5 (268-323)||(34995472-34995527)
chr5 (266-352)||(29998565-29998651)
chr5 (128-169)||(2259569-2259610)
chr5 (272-353)||(31329270-31329351)
chr5 (268-353)||(32038414-32038498)
chr5 (272-352)||(13642802-13642882)
chr5 (125-169)||(24765684-24765728)
[»] chr7 (24 HSPs)
chr7 (266-353)||(980917-981004)
chr7 (258-362)||(10996364-10996468)
chr7 (266-323)||(1862350-1862407)
chr7 (268-339)||(1537965-1538036)
chr7 (268-353)||(1633304-1633389)
chr7 (116-167)||(10995667-10995718)
chr7 (266-339)||(12163393-12163466)
chr7 (266-323)||(22849547-22849604)
chr7 (269-353)||(14073790-14073873)
chr7 (269-353)||(14383818-14383901)
chr7 (268-352)||(28780181-28780265)
chr7 (276-344)||(37375017-37375085)
chr7 (267-323)||(38993120-38993176)
chr7 (266-321)||(20382331-20382386)
chr7 (116-165)||(28780014-28780063)
chr7 (276-352)||(2040072-2040148)
chr7 (268-322)||(4463454-4463509)
chr7 (268-323)||(11295393-11295448)
chr7 (273-339)||(12727806-12727872)
chr7 (268-353)||(3399544-3399629)
chr7 (277-326)||(11842764-11842813)
chr7 (116-165)||(14073625-14073674)
chr7 (116-165)||(14383653-14383702)
chr7 (277-326)||(28937357-28937406)
[»] scaffold0437 (2 HSPs)
scaffold0437 (272-354)||(11418-11500)
scaffold0437 (266-353)||(14323-14410)
[»] chr6 (40 HSPs)
chr6 (272-354)||(14641440-14641522)
chr6 (266-363)||(20589631-20589728)
chr6 (268-353)||(20898962-20899047)
chr6 (266-353)||(34338087-34338174)
chr6 (258-363)||(24617716-24617821)
chr6 (280-363)||(8483615-8483698)
chr6 (261-339)||(841311-841390)
chr6 (266-337)||(1448788-1448859)
chr6 (266-353)||(12435952-12436039)
chr6 (268-351)||(24127819-24127902)
chr6 (272-354)||(13575005-13575087)
chr6 (272-354)||(13577544-13577626)
chr6 (266-352)||(24373513-24373599)
chr6 (266-339)||(15141911-15141984)
chr6 (271-323)||(9351147-9351199)
chr6 (266-326)||(11650837-11650897)
chr6 (266-353)||(3056935-3057022)
chr6 (266-353)||(11319467-11319554)
chr6 (268-339)||(14372193-14372264)
chr6 (268-323)||(26522725-26522780)
chr6 (268-333)||(31633595-31633660)
chr6 (258-358)||(30884390-30884490)
chr6 (266-353)||(1110454-1110541)
chr6 (268-354)||(13565913-13565999)
chr6 (268-354)||(13570465-13570551)
chr6 (266-323)||(10138869-10138926)
chr6 (268-353)||(26592515-26592600)
chr6 (268-353)||(32569830-32569915)
chr6 (280-344)||(7242877-7242941)
chr6 (275-339)||(8462014-8462078)
chr6 (268-323)||(9696881-9696936)
chr6 (268-323)||(27962066-27962121)
chr6 (279-353)||(24205471-24205545)
chr6 (268-353)||(8212248-8212333)
chr6 (266-339)||(9344476-9344549)
chr6 (258-336)||(14982378-14982458)
chr6 (268-353)||(18306721-18306805)
chr6 (266-294)||(12085546-12085574)
chr6 (267-323)||(13580179-13580235)
chr6 (266-306)||(30492340-30492380)
[»] scaffold0068 (1 HSPs)
scaffold0068 (272-353)||(2298-2379)
[»] scaffold0009 (1 HSPs)
scaffold0009 (268-353)||(1487-1572)
[»] chr8 (33 HSPs)
chr8 (268-353)||(16290856-16290941)
chr8 (272-354)||(24184743-24184825)
chr8 (282-355)||(18036807-18036880)
chr8 (268-353)||(26657667-26657752)
chr8 (260-356)||(24317392-24317487)
chr8 (266-353)||(21593181-21593268)
chr8 (266-353)||(23595375-23595462)
chr8 (266-353)||(23604297-23604384)
chr8 (268-351)||(26867458-26867541)
chr8 (258-339)||(44337-44418)
chr8 (268-353)||(10568293-10568378)
chr8 (372-448)||(9078806-9078885)
chr8 (372-448)||(9087583-9087662)
chr8 (267-323)||(43856117-43856173)
chr8 (266-353)||(16889972-16890059)
chr8 (268-353)||(45268828-45268913)
chr8 (272-323)||(29840865-29840916)
chr8 (270-336)||(26393352-26393418)
chr8 (268-353)||(6001422-6001507)
chr8 (116-165)||(10568537-10568586)
chr8 (277-326)||(19742051-19742100)
chr8 (267-339)||(43848109-43848181)
chr8 (38-81)||(9078761-9078804)
chr8 (38-81)||(9087538-9087581)
chr8 (258-353)||(16932556-16932651)
chr8 (268-326)||(21499362-21499420)
chr8 (268-353)||(14413337-14413422)
chr8 (119-156)||(25328795-25328832)
chr8 (268-333)||(29250256-29250320)
chr8 (272-321)||(40263681-40263730)
chr8 (129-169)||(44207-44247)
chr8 (266-306)||(16043682-16043722)
chr8 (268-352)||(41600724-41600808)
[»] chr3 (21 HSPs)
chr3 (268-353)||(1051310-1051395)
chr3 (266-353)||(16309658-16309745)
chr3 (266-353)||(18490652-18490739)
chr3 (268-353)||(25760020-25760105)
chr3 (280-339)||(10623242-10623301)
chr3 (268-353)||(26430257-26430342)
chr3 (268-353)||(26953944-26954029)
chr3 (258-358)||(19185066-19185166)
chr3 (268-353)||(16037957-16038042)
chr3 (268-353)||(16041502-16041587)
chr3 (268-345)||(19826413-19826490)
chr3 (268-339)||(51661680-51661751)
chr3 (273-339)||(47165893-47165959)
chr3 (268-353)||(3736481-3736566)
chr3 (268-353)||(16053453-16053538)
chr3 (268-353)||(18517678-18517763)
chr3 (266-338)||(19256125-19256197)
chr3 (279-331)||(27943628-27943680)
chr3 (272-347)||(33537305-33537380)
chr3 (266-339)||(3569478-3569551)
chr3 (279-323)||(20952399-20952443)
[»] chr1 (37 HSPs)
chr1 (258-363)||(16816217-16816322)
chr1 (258-339)||(19054392-19054473)
chr1 (268-339)||(34528926-34528997)
chr1 (266-345)||(18332702-18332781)
chr1 (266-353)||(27035845-27035932)
chr1 (265-353)||(10433194-10433282)
chr1 (267-353)||(21487829-21487915)
chr1 (268-353)||(10423794-10423879)
chr1 (269-358)||(13309367-13309456)
chr1 (268-352)||(43021729-43021814)
chr1 (104-164)||(16816395-16816455)
chr1 (268-347)||(12629248-12629327)
chr1 (258-353)||(33012744-33012839)
chr1 (268-353)||(19088874-19088959)
chr1 (268-353)||(41574292-41574376)
chr1 (267-323)||(17122828-17122884)
chr1 (267-339)||(33064827-33064899)
chr1 (272-339)||(10032095-10032162)
chr1 (266-345)||(15114141-15114220)
chr1 (266-345)||(15120865-15120944)
chr1 (266-345)||(15127157-15127236)
chr1 (266-345)||(15145053-15145132)
chr1 (267-321)||(41917077-41917131)
chr1 (268-353)||(907652-907737)
chr1 (277-326)||(3833446-3833495)
chr1 (268-345)||(34517679-34517756)
chr1 (258-358)||(24230171-24230271)
chr1 (266-353)||(2583072-2583159)
chr1 (268-323)||(21813163-21813218)
chr1 (266-339)||(9266081-9266154)
chr1 (268-353)||(11779318-11779403)
chr1 (266-323)||(15318104-15318160)
chr1 (268-353)||(16280431-16280516)
chr1 (124-161)||(20149914-20149951)
chr1 (272-353)||(23487455-23487536)
chr1 (277-326)||(31893123-31893172)
chr1 (273-353)||(26505887-26505967)
[»] chr2 (31 HSPs)
chr2 (258-353)||(28522842-28522937)
chr2 (269-339)||(40926468-40926538)
chr2 (266-339)||(1490652-1490725)
chr2 (268-339)||(17151295-17151366)
chr2 (268-353)||(20477425-20477510)
chr2 (116-168)||(28522698-28522750)
chr2 (268-323)||(36802288-36802343)
chr2 (268-353)||(17679707-17679792)
chr2 (267-356)||(20374107-20374196)
chr2 (268-353)||(22169959-22170044)
chr2 (275-339)||(13619101-13619165)
chr2 (268-352)||(38242129-38242213)
chr2 (99-169)||(25652970-25653040)
chr2 (267-353)||(38376857-38376943)
chr2 (266-335)||(6083733-6083802)
chr2 (268-353)||(12102809-12102894)
chr2 (268-353)||(17377499-17377584)
chr2 (116-161)||(28698031-28698076)
chr2 (268-353)||(34454890-34454975)
chr2 (267-323)||(20434205-20434261)
chr2 (268-339)||(17678296-17678367)
chr2 (268-323)||(24524099-24524154)
chr2 (268-323)||(26916628-26916683)
chr2 (266-321)||(27206407-27206462)
chr2 (268-326)||(28948870-28948929)
chr2 (266-353)||(29216601-29216688)
chr2 (266-353)||(29329900-29329987)
chr2 (268-322)||(24270841-24270895)
chr2 (269-322)||(24297342-24297395)
chr2 (277-326)||(32234446-32234495)
chr2 (258-358)||(3914233-3914333)
[»] scaffold0114 (1 HSPs)
scaffold0114 (258-363)||(2959-3064)
[»] chr4 (23 HSPs)
chr4 (258-339)||(34657920-34658001)
chr4 (280-353)||(37005894-37005967)
chr4 (268-353)||(11415968-11416053)
chr4 (268-339)||(39406824-39406895)
chr4 (268-339)||(44673682-44673753)
chr4 (268-353)||(8667091-8667175)
chr4 (279-339)||(19298816-19298877)
chr4 (267-323)||(11485220-11485276)
chr4 (268-347)||(23795462-23795541)
chr4 (268-339)||(25219653-25219724)
chr4 (268-323)||(33040597-33040652)
chr4 (268-358)||(34512060-34512150)
chr4 (268-353)||(1924647-1924732)
chr4 (113-158)||(3007482-3007527)
chr4 (266-339)||(4936023-4936096)
chr4 (266-323)||(18234240-18234297)
chr4 (116-165)||(39407012-39407061)
chr4 (268-323)||(6192585-6192640)
chr4 (266-337)||(18487445-18487515)
chr4 (116-154)||(20380427-20380465)
chr4 (268-353)||(3007276-3007361)
chr4 (266-347)||(15159402-15159483)
chr4 (268-339)||(41068856-41068928)
[»] scaffold0911 (1 HSPs)
scaffold0911 (268-339)||(2226-2297)
[»] scaffold1667 (1 HSPs)
scaffold1667 (266-339)||(710-783)
[»] scaffold0886 (1 HSPs)
scaffold0886 (266-339)||(2780-2853)
[»] scaffold0166 (2 HSPs)
scaffold0166 (258-339)||(8005-8086)
scaffold0166 (125-169)||(8181-8225)
[»] scaffold0044 (1 HSPs)
scaffold0044 (266-339)||(20856-20929)
[»] scaffold0607 (1 HSPs)
scaffold0607 (268-351)||(302-385)
[»] scaffold0012 (3 HSPs)
scaffold0012 (268-339)||(103706-103777)
scaffold0012 (268-353)||(55769-55854)
scaffold0012 (269-333)||(52710-52774)
[»] scaffold0111 (1 HSPs)
scaffold0111 (267-356)||(41225-41314)
[»] scaffold0291 (1 HSPs)
scaffold0291 (273-339)||(21881-21947)
[»] scaffold0093 (1 HSPs)
scaffold0093 (268-353)||(16024-16109)
[»] scaffold0029 (2 HSPs)
scaffold0029 (268-353)||(129421-129506)
scaffold0029 (113-158)||(129258-129303)
[»] scaffold0006 (1 HSPs)
scaffold0006 (268-353)||(36665-36750)
[»] scaffold0002 (2 HSPs)
scaffold0002 (268-353)||(307238-307323)
scaffold0002 (113-158)||(307075-307120)
[»] scaffold0176 (1 HSPs)
scaffold0176 (268-352)||(26452-26535)
[»] scaffold0356 (1 HSPs)
scaffold0356 (277-324)||(13734-13781)
[»] scaffold0265 (1 HSPs)
scaffold0265 (268-323)||(19591-19646)
[»] scaffold0134 (1 HSPs)
scaffold0134 (268-323)||(2481-2536)
[»] scaffold0045 (1 HSPs)
scaffold0045 (266-321)||(80333-80388)
[»] scaffold0238 (1 HSPs)
scaffold0238 (273-339)||(4444-4510)
[»] scaffold0196 (1 HSPs)
scaffold0196 (297-339)||(793-835)
[»] scaffold0041 (1 HSPs)
scaffold0041 (267-321)||(3417-3471)
[»] scaffold0363 (1 HSPs)
scaffold0363 (268-353)||(5289-5374)
[»] scaffold0236 (1 HSPs)
scaffold0236 (266-347)||(6404-6485)
[»] scaffold0015 (1 HSPs)
scaffold0015 (116-165)||(2299-2348)
[»] scaffold0013 (1 HSPs)
scaffold0013 (268-325)||(100977-101033)
[»] scaffold0007 (1 HSPs)
scaffold0007 (266-323)||(173866-173923)
[»] scaffold0292 (1 HSPs)
scaffold0292 (297-353)||(21249-21305)
[»] scaffold0024 (1 HSPs)
scaffold0024 (267-323)||(160305-160361)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 2259485 - 2259388
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccg 355  Q
    ||||||| ||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  2259485 aataaaatttgagtttggctgcataggatggaggtttcccgggatgccaacctagttgggatgtcggtgtttcctcttgatgcatgtccactctcccg 2259388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 21711612 - 21711531
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  21711612 ttggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctcc 21711531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 15614744 - 15614823
Alignment:
Q  275 gcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  15614744 gcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctccc 15614823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 24765589 - 24765508
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||| ||||||||||| ||||| || ||||||| |||||| |||||  |||||||||||||||||  ||||||||||||    
T  24765589 aataaaatttgagtttggctgcatatgagggaggtttcccgggatgccaatctagttgggatgtcggtatttcctcttgatg 24765508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 19068772 - 19068688
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    |||||||||||||||||||||||||| | | |||||||| ||||||| |||||||| || | |||||| |||  |||||||||||    
T  19068772 gagtttggcggcataggatggaggtttctcagggtgccaacctagtttggatgtcgatgttgcctcttaatgtctgtcctctctc 19068688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 21027095 - 21027039
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||    
T  21027095 tgagtttggcggcataggatgggggttctgcggggtgccaacctagttgggatgtcg 21027039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 4120523 - 4120605
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    |||| ||||||| ||| ||| | ||| |||||||| ||||||||||||||||||| | |||||||||| || |||||||||||    
T  4120523 ttggtggcatagaatgaagggttcccagggtgccaacctagttgggatgtcggtgttccctcttgatgtttatcctctctccc 4120605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 22602111 - 22602038
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||| ||| ||||||||||||| |||||  |||||||||| |||||||||||||||| || |||| |||||||    
T  22602111 ttgaggttgacggcataggatgggggttctgcggggtgccaacctagttgggatgtcgttgattccccttgatg 22602038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 35341889 - 35341973
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||  | ||||||||||  ||||||||||||||| || |  |||||||||  ||||||||||||    
T  35341889 gagtttggcggcataggatggaggtatctcggggtgcca-actagttgggatgtcgatgatgactcttgatgcctgtcctctctcc 35341973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 39324426 - 39324353
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||| |||||||||||||  | ||| |||||| |||||||||||||||| || | ||||||||||    
T  39324426 ttgagtttggcggtataggatggaggtctctcggagtgccaacctagttgggatgtcgatgatgcctcttgatg 39324353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 21877970 - 21877894
Alignment:
Q  277 ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||  | |||||||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  21877970 ggcataggatggaggtgtctcggggtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 21877894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 28637626 - 28637694
Alignment:
Q  276 cggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgt 344  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||  | |||| ||||||| ||||    
T  28637626 cggcataggatgggggttcctcggggtgccaacctagttgggatgtcgtcgcttccccttgatgcttgt 28637694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 28682830 - 28682764
Alignment:
Q  273 tggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||||  | |||| ||||| |||||||||||||||| || | ||||||||||    
T  28682830 tggcggcataggatggaggtctctcgggatgccaacctagttgggatgtcgatgatgcctcttgatg 28682764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 5781158 - 5781073
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||| ||||||||||||| ||| | |||| ||||| |||||||||||||||| || | |||||| |||  ||||||| ||||    
T  5781158 gagtttggtggcataggatggaagtttctcgggatgccaacctagttgggatgtcgatgttgcctcttaatgtctgtcctccctcc 5781073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 11725648 - 11725703
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||||||||||||||  | ||| |||||| |||| |||||||||||    
T  11725648 gagtttggcggcataggatggaggtctctcggagtgccaacctaattgggatgtcg 11725703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 34995527 - 34995472
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||| |||||||||||||| |  | |||||||||| ||||||||||||||||    
T  34995527 gagtttggtggcataggatggagttatctcggggtgccaacctagttgggatgtcg 34995472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 352
Target Start/End: Complemental strand, 29998651 - 29998565
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    ||||||||||||||||| |||||||||  |  | | ||||| |||||||||||||||| || |  |||||||||  |||||||||||    
T  29998651 ttgagtttggcggcatacgatggaggtctcttgagatgccaacctagttgggatgtcgatgatgtctcttgatgcctgtcctctctc 29998565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 2259610 - 2259569
Alignment:
Q  128 agatgtggtcttccaaactacaaatttccttaatctgtggta 169  Q
    |||||||||||||| ||||||| ||||||||| |||||||||    
T  2259610 agatgtggtcttcctaactacagatttccttagtctgtggta 2259569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 31329351 - 31329270
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||  | |||| | |||  |||||||| |||||| || | ||||||||||  ||||||||||||    
T  31329351 ttggcggcataggatggaggtatctcgggataccaatctagttggaatgtcgatgatgcctcttgatgcctgtcctctctcc 31329270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 32038498 - 32038414
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||| |||  ||| ||| | ||||||  ||||||||  || ||||||||| ||| |||||||||    
T  32038498 gagtttggcggcataggatggaggtttcccaaggtaccaacttagttgaaatgtcggtattttctcttgatgtttg-cctctctcc 32038414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 13642882 - 13642802
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    |||||||||||||||||||||  | |||||| |||  |||||||| |||||| || | |||| |||||  |||||||||||    
T  13642882 ttggcggcataggatggaggtatctcggggtaccaatctagttggaatgtcgatgatgcctcctgatgtctgtcctctctc 13642802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 24765728 - 24765684
Alignment:
Q  125 gatagatgtggtcttccaaactacaaatttccttaatctgtggta 169  Q
    ||||||||||||||||| ||||||| |||||| || |||||||||    
T  24765728 gatagatgtggtcttcctaactacagatttccatagtctgtggta 24765684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 980917 - 981004
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | | |||||||||| |||||||||||||    
T  980917 ttgagtttggcggcataggatggaggttctccggagtgccaacctagttgggatgtcggagctgcctcttgatgtttgtcctctctcc 981004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 10996364 - 10996468
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggt 357  Q
    ||||||| ||||||||||||||||||||||||  || || ||||||||| | |||||| ||| |||||| |||||||||||| || |||||||||||| |    
T  10996364 aataaaatttgagtttggcggcataggatggaattttcctggggtgccaacttagttgagatatcggtgtttcctcttgatgtttttcctctctcccgat 10996463  T
Q  358 tcatc 362  Q
    |||||    
T  10996464 tcatc 10996468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 1862407 - 1862350
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  1862407 ttgagtttggcggcataggatggaggttctccggggtgccaacctagttgggatgtcg 1862350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 1538036 - 1537965
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||| |||  |||| || ||||||||||||||||||| ||||||||||||    
T  1538036 gagtttggcggcataggatggaggtttccctaggtggcaacctagttgggatgtcggtgtttcctcttgatg 1537965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 1633304 - 1633389
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||| |||||| | ||||||| || |||||||||  |||||||| ||||||||||||  ||||||||||||    
T  1633304 gagtttggcggcataggattgaggtttctcggggtgtcaacctagttggattgtcggtgtttcctcttgatgcatgtcctctctcc 1633389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 10995667 - 10995718
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgtgg 167  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  10995667 ttctttcggaatagatgtggtcttccaaactacaaatttccctaatctgtgg 10995718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 12163393 - 12163466
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||| ||||||||| | |||||||||| |||| ||||||| ||||||||||||||||||| | ||||||||||    
T  12163393 ttgaggttggcggcagacgatggaggtttcccgaggtgccaacctagttgggatgtcggtgttgcctcttgatg 12163466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 22849604 - 22849547
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||||||||||||||||| |||||  | |||||||||| ||||||||||||||||    
T  22849604 ttgagtttggcggcataggatagaggtatctcggggtgccaacctagttgggatgtcg 22849547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 14073790 - 14073873
Alignment:
Q  269 agtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||||||||| | | |||||||| ||||||||| | |||| || | ||||||||| | ||||||||||||    
T  14073790 agtttggcggcataggatggaggtttctcagggtgccaacctagttggtaagtcgatgttgcctcttgat-gctgtcctctctcc 14073873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 14383818 - 14383901
Alignment:
Q  269 agtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||||||||| | | |||||||| ||||||||| | |||| || | ||||||||| | ||||||||||||    
T  14383818 agtttggcggcataggatggaggtttctcagggtgccaacctagttggtaagtcgatgttgcctcttgat-gctgtcctctctcc 14383901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 28780181 - 28780265
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    |||||||||||||||||||| || || |  ||| ||||| |||||||||||||||| || | ||||||||||  |||||||||||    
T  28780181 gagtttggcggcataggatgaagatttcttgggatgccaacctagttgggatgtcgatgttgcctcttgatgcatgtcctctctc 28780265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 37375017 - 37375085
Alignment:
Q  276 cggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgt 344  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||  | |||| ||||||| ||||    
T  37375017 cggcataggatgggggttcctcggggtgccaacctagttgggatgtcgtcgcttccccttgatgcttgt 37375085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 38993176 - 38993120
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| ||||||||||||||||| |||||  |||||||||| ||||||||||||||||    
T  38993176 tgagattggcggcataggatgggggttctgcggggtgccaacctagttgggatgtcg 38993120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 20382331 - 20382386
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgt 321  Q
    ||||| ||||||||||||||||| |||||  |||||||||| ||||||||||||||    
T  20382331 ttgagattggcggcataggatgggggttctgcggggtgccaacctagttgggatgt 20382386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 28780014 - 28780063
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgt 165  Q
    ||||||| ||||||||||||| | || |||||||||||||||||||||||    
T  28780014 ttctttcaggatagatgtggtttacctaactacaaatttccttaatctgt 28780063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 2040148 - 2040072
Alignment:
Q  276 cggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    |||||||||||| ||||||  |||| ||||| ||||||||||||||||||| | |||||| |||  |||||| ||||    
T  2040148 cggcataggatgaaggttcatcgggatgccaacctagttgggatgtcggtgctacctcttcatgtatgtcctttctc 2040072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 4463509 - 4463454
Alignment:
Q  268 gagtttggcgg-cataggatggaggttccccggggtgccatcctagttgggatgtc 322  Q
    ||||||||||| ||||||||||||| | || ||||||||| |||||||||||||||    
T  4463509 gagtttggcgggcataggatggaggcttcctggggtgccaacctagttgggatgtc 4463454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 11295448 - 11295393
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||||||||||||||| |||||| | ||| |||||| ||||||| ||||||||    
T  11295448 gagtttggcggcataggatagaggtttctcggagtgccaacctagtttggatgtcg 11295393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 12727806 - 12727872
Alignment:
Q  273 tggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||| |||  | |||| ||||| |||||||||||||||| || | ||||||||||    
T  12727806 tggcggcataggatgggggtctctcgggatgccaacctagttgggatgtcgatgatgcctcttgatg 12727872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 3399629 - 3399544
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| |||||||||||| ||||| | |||||||||| ||||||||| | |||| || | ||| ||||||  | ||||||||||    
T  3399629 gagtttgacggcataggatgaaggtttctcggggtgccaacctagttggtaagtcgatgttgccttttgatgtctatcctctctcc 3399544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 11842764 - 11842813
Alignment:
Q  277 ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    |||||||| |||||| | |||||||| ||| |||||||||||||||||||    
T  11842764 ggcatagggtggaggcttcccggggtaccaacctagttgggatgtcggtg 11842813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 14073625 - 14073674
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgt 165  Q
    ||||||||||||||||||||| | || ||| ||| |||||||||||||||    
T  14073625 ttctttcgggatagatgtggtttacctaacaacagatttccttaatctgt 14073674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 14383653 - 14383702
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgt 165  Q
    ||||||||||||||||||||| | || ||| ||| |||||||||||||||    
T  14383653 ttctttcgggatagatgtggtttacctaacaacagatttccttaatctgt 14383702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 28937357 - 28937406
Alignment:
Q  277 ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    ||||||||||||||| |  ||||| ||||| |||||||||||||||||||    
T  28937357 ggcataggatggaggctttccgggatgccaacctagttgggatgtcggtg 28937406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 11418 - 11500
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  11418 ttggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccc 11500  T

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Target: scaffold0437; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 14410 - 14323
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||||  | |||| ||||| |||||||||||||||| || | ||||||||||  ||||||||||||    
T  14410 ttgagtttggcggcataggatggaggtctctcgggatgccaacctagttgggatgtcgatgatgcctcttgatgtctgtcctctctcc 14323  T

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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 14641440 - 14641522
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  14641440 ttggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccc 14641522  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 266 - 363
Target Start/End: Original strand, 20589631 - 20589728
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggttcatcc 363  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||| ||||||||||  |||||| ||||| |||| ||||    
T  20589631 ttgagtctggcggcataggatggaggttctccggggtgccaacctagttgagatgtcggaggtccctcttgatgcctgtcctttctcctggtttatcc 20589728  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 20898962 - 20899047
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||| ||||||| |||||||| || ||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  20898962 gagtttggcagcatagggtggaggtttcctggggtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcc 20899047  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 34338174 - 34338087
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||||||||||||||||||||||  | |||||||||| |||||||||||||||| || ||||||||||||| |||| |||||||    
T  34338174 ttgaatttggcggcataggatggaggtctctcggggtgccaacctagttgggatgtcgatgattcctcttgatggctgtcatctctcc 34338087  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 24617821 - 24617716
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggt 357  Q
    ||||||| |||||| |||| | || |||||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||  ||||| | ||||||||    
T  24617821 aataaaatttgagtgtggctgtatgggatggaggttttccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcatgtccacgctcccggt 24617722  T
Q  358 tcatcc 363  Q
    | ||||    
T  24617721 ttatcc 24617716  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 8483698 - 8483615
Alignment:
Q  280 ataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggttcatcc 363  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||  ||||| | ||||||||| ||||    
T  8483698 ataggatagaggttccccggggtgccaacctagttgggatgtccgtgtttcctcttgatgcatgtccacgctcccggtttatcc 8483615  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 841390 - 841311
Alignment:
Q  261 aaaaattgagtttggcggcataggatggaggttccc-cggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||| |||||||||||| |||||||||||||||||| |||||||||| | ||||||||||||||||| || ||| |||||    
T  841390 aaaatttgagtttggcgacataggatggaggttccctcggggtgccaacttagttgggatgtcggtgttttctcatgatg 841311  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 1448788 - 1448859
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttga 337  Q
    ||||||||||||||||||||| ||||||| ||| ||||||  ||||||| ||||||||||| ||||||||||    
T  1448788 ttgagtttggcggcataggatagaggttctccgtggtgccgacctagttaggatgtcggtgcttcctcttga 1448859  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 12435952 - 12436039
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||| ||||||||||||||||||||||   |||||||||| |||||||||||||||| || | |||| |||||  ||||||||||||    
T  12435952 ttgagcttggcggcataggatggaggtttgtcggggtgccaacctagttgggatgtcgatgatgcctcctgatgcatgtcctctctcc 12436039  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 24127902 - 24127819
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctct 351  Q
    |||||||||||||||||||||||||| | || ||||||| ||||| |||||||||| || | ||||||||||  ||||||||||    
T  24127902 gagtttggcggcataggatggaggtttctcgaggtgccaacctagctgggatgtcgatgatacctcttgatgtctgtcctctct 24127819  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 13575005 - 13575087
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    ||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| | ||||||||||  |||| ||||||||    
T  13575005 ttggcggtataggatgaaggtttcccggagtgccaacctagttgggatgtcggtgttccctcttgatgcatgtcttctctccc 13575087  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 13577544 - 13577626
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    ||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| | ||||||||||  |||| ||||||||    
T  13577544 ttggcggtataggatgaaggtttcccggagtgccaacctagttgggatgtcggtgttccctcttgatgcatgtcttctctccc 13577626  T

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Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 24373513 - 24373599
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    ||||| ||||||||||||||||||||||| || |||| ||| ||||||||||||||| ||| |||||| |||||  |||||| ||||    
T  24373513 ttgagattggcggcataggatggaggttctccagggtaccaacctagttgggatgtcagtgcttcctcgtgatgcatgtcctttctc 24373599  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 15141984 - 15141911
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||| ||||||||| | |||| ||||| |||||| ||||| ||||||||||||||||||| ||||||||||||    
T  15141984 ttgaggttggcggcagacgatgcaggtttcccgggttgccaacctagttgggatgtcggtgtttcctcttgatg 15141911  T

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Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 9351199 - 9351147
Alignment:
Q  271 tttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  9351199 tttggcggcataggatggaggtttctcggggtgccaacctagttgggatgtcg 9351147  T

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Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 11650837 - 11650897
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    ||||||||||||||||| |||||||||||||  |||||||| |||||||||||||| ||||    
T  11650837 ttgagtttggcggcataagatggaggttccctagggtgccaacctagttgggatgtaggtg 11650897  T

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Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 3056935 - 3057022
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||| || |  |||||||||  ||||| ||||||    
T  3056935 ttgagtttggcggcataggatggaggtttctcggggtaccaacttagttgggatgtcgatgttgtctcttgatgcctgtccactctcc 3057022  T

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Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 11319467 - 11319554
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||| |||||||||| ||| ||||||| ||  ||||||| |||||||| ||||| |||| ||||||||||||  ||||||||||||    
T  11319467 ttgagtatggcggcataagatagaggttctccaaggtgccaacctagttgagatgttggtgcttcctcttgatgcatgtcctctctcc 11319554  T

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Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 14372264 - 14372193
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||||||| || | ||| |||||| |||||||||||||||| || | ||||||||||    
T  14372264 gagtttggcggcataggatggagatttctcggagtgccaacctagttgggatgtcgatgttgcctcttgatg 14372193  T

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Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 26522725 - 26522780
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||||||||||||||  | |||||||||| ||||||||||||||||    
T  26522725 gagtttggcggcataggatggaggtctctcggggtgccaacctagttgggatgtcg 26522780  T

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Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 31633660 - 31633595
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctc 333  Q
    |||||||||||||||||| ||||||| ||| || |||||  |||||||||||||||||| ||||||    
T  31633660 gagtttggcggcataggacggaggtttcccaggatgccaatctagttgggatgtcggtgtttcctc 31633595  T

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Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 30884390 - 30884490
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggt 357  Q
    ||||||| ||||| ||||||| |||||||||| |||   ||||||| || |||||||||||||||| || |||  |||||||  |||||||||||| |||    
T  30884390 aataaaatttgagattggcggtataggatggaagtttatcggggtgtcaacctagttgggatgtcgttgattctccttgatgcatgtcctctctcctggt 30884489  T
Q  358 t 358  Q
    |    
T  30884490 t 30884490  T

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Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 1110454 - 1110541
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||| |||||||||||| | ||| |||||| | ||  |||||||||| || ||||||||||||  |||||| |||||    
T  1110454 ttgagtttggcggcaaaggatggaggtttcgcggagtgccaacttaaatgggatgtcgttgtttcctcttgatgtatgtcctttctcc 1110541  T

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Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 13565913 - 13565999
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    ||||||||||| ||||||| |||||| |  |  |||||| |||||||||||||||| || | ||||||||||  |||||||||||||    
T  13565913 gagtttggcggtataggatagaggtttcttgatgtgccaacctagttgggatgtcgttgttccctcttgatgcatgtcctctctccc 13565999  T

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Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 13570465 - 13570551
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    |||||| |||| |||||||| | ||| | ||||||||||  ||||||||||||| |||| | ||||||||||  |||||||||||||    
T  13570465 gagttttgcggtataggatgaatgtttctcggggtgccaatctagttgggatgtaggtgttccctcttgatgcatgtcctctctccc 13570551  T

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Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 10138869 - 10138926
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||||||||| ||||||| |||||  | |||||||||| ||||||||||||||||    
T  10138869 ttgagtttggcggtataggatagaggtgtctcggggtgccaacctagttgggatgtcg 10138926  T

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Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 26592600 - 26592515
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||| |||  ||| ||| ||||||||| ||||| ||| |  |||||||||  ||| ||||||||    
T  26592600 gagtttggcggcataggatggaggtttcccaaggtaccaacctagttggaatgtcagtgttctctcttgatgcatgttctctctcc 26592515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 32569830 - 32569915
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||| |||||| | || |||| ||  ||||||||||||||| || | |||||| |||  ||||||||||||    
T  32569830 gagtttggcggcataggatagaggtttctcgaggtgtcaatctagttgggatgtcgatgttgcctcttaatgactgtcctctctcc 32569915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 7242941 - 7242877
Alignment:
Q  280 ataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgt 344  Q
    |||| |||| |||||| |||||||||| ||||||||||||||||  | |||||||||||| ||||    
T  7242941 atagaatgggggttcctcggggtgccaacctagttgggatgtcgtcgcttcctcttgatgcttgt 7242877  T

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Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 8462014 - 8462078
Alignment:
Q  275 gcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||  | || ||||||| |||||||||||||||| || | ||||||||||    
T  8462014 gcggcataggatggaggtctctcgaggtgccaacctagttgggatgtcgatgatgcctcttgatg 8462078  T

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Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 9696936 - 9696881
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||||||||||||||  | ||| |||||| | ||||||||||||||    
T  9696936 gagtttggcggcataggatggaggtatctcggcgtgccaacttagttgggatgtcg 9696881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 27962121 - 27962066
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| |||||||||||||||||| |  | |||||||||| ||||||||||||||||    
T  27962121 gagtctggcggcataggatggagatgtctcggggtgccaacctagttgggatgtcg 27962066  T

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Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 24205471 - 24205545
Alignment:
Q  279 cataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||  | |||||||| | |||||||||||||| |  ||||||| ||||  ||||||||||||    
T  24205471 cataggatggaggttcatcagggtgccaacttagttgggatgtcgttctttcctctcgatgcatgtcctctctcc 24205545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 8212333 - 8212248
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||| ||||||||||||||||||| | |||||||||| |||| |||  |||||| || ||| | ||||||  ||| ||||||||    
T  8212333 gagtttagcggcataggatggaggtttcgcggggtgccaacctaattgaaatgtcgctgtttcatgttgatgtctgttctctctcc 8212248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 9344476 - 9344549
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||  ||||||| ||||||||   ||| |||||| |||||||||||||||| || || |||||||||    
T  9344476 ttgagtttggaagcatagggtggaggttttgcggagtgccaacctagttgggatgtcgttgttttctcttgatg 9344549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 14982378 - 14982458
Alignment:
Q  258 aataaaaatt--gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttg 336  Q
    ||||||||||  |||||||||||||||||||||| ||| | || |||| || || ||||||||||||| || | |||||||    
T  14982378 aataaaaatttagagtttggcggcataggatggaagtttctcgaggtgtcaaccaagttgggatgtcgatgttgcctcttg 14982458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 18306805 - 18306721
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| |||||||||||||||||  | |||| ||||| |||||||||||||||| || |  ||| |||||  ||||||||||||    
T  18306805 gagtttgacggcataggatggaggtatctcggg-tgccaacctagttgggatgtcgatgatgactcctgatgcctgtcctctctcc 18306721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 12085546 - 12085574
Alignment:
Q  266 ttgagtttggcggcataggatggaggttc 294  Q
    |||||||||||||||||||||||||||||    
T  12085546 ttgagtttggcggcataggatggaggttc 12085574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 13580235 - 13580179
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| ||||||||||||||||| |||||  |||||||||| |||| | |||||||||    
T  13580235 tgaggttggcggcataggatgggggttctacggggtgccaacctaatggggatgtcg 13580179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 30492340 - 30492380
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgcca 306  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  30492340 ttgagtttggcggcataggatggaggttttccggtgtgcca 30492380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 2298 - 2379
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  2298 ttggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctcc 2379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 1572 - 1487
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||  |||||||||||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  1572 gagtttggaagcataggatggaggtttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcc 1487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 16290856 - 16290941
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| | |||||||||| ||||||| |||||    
T  16290856 gagtttggcagcataggatggaggtttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgtttgtcctttctcc 16290941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 24184825 - 24184743
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 354  Q
    |||||||||||||||||||| | |||||| ||||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  24184825 ttggcggcataggatggagggttcccgggatgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccc 24184743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 18036880 - 18036807
Alignment:
Q  282 aggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccg 355  Q
    |||||||||||||| |||||||||| | ||||||||||||||||| |||||||||||| |||||||||||||||    
T  18036880 aggatggaggttcctcggggtgccaacatagttgggatgtcggtgtttcctcttgatgtttgtcctctctcccg 18036807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 26657667 - 26657752
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||| ||||||||||||||||| ||||  |||||| | ||||||||||||||||| ||||||||||||  ||||||||||||    
T  26657667 gagtttggtggcataggatggaggtttcccgaagtgccaacttagttgggatgtcggtgtttcctcttgatgcatgtcctctctcc 26657752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 24317392 - 24317487
Alignment:
Q  260 taaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccgg 356  Q
    ||||| ||||| ||||||||||||||| ||||||||| ||||||||| ||||||||| |||| |||| ||||||||||||  ||| |||||||||||    
T  24317392 taaaatttgagattggcggcataggatagaggttccc-ggggtgccaacctagttggtatgttggtgtttcctcttgatgtatgttctctctcccgg 24317487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 21593181 - 21593268
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||| ||||  | |||||||||| ||||||||| |||||| || | ||||||||||  ||||||||||||    
T  21593181 ttgagtttggcggcataggatgaaggtctctcggggtgccaacctagttggaatgtcgatgatgcctcttgatgcctgtcctctctcc 21593268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 23595375 - 23595462
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||||  | | |||| ||| |||||||||||||||| || | ||||||||||  ||||||||||||    
T  23595375 ttgagtttggcggcataggatggaggtctctcagggtaccaacctagttgggatgtcgatgatgcctcttgatgcgtgtcctctctcc 23595462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 23604297 - 23604384
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||||  | | |||| ||| |||||||||||||||| || | ||||||||||  ||||||||||||    
T  23604297 ttgagtttggcggcataggatggaggtctctcagggtaccaacctagttgggatgtcgatgatgcctcttgatgcgtgtcctctctcc 23604384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 26867458 - 26867541
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctct 351  Q
    |||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||| || | |||||||| |  ||||||||||    
T  26867458 gagtttggcggcgtaggatggaggtttcccgaggtgccaacctagttgggatgtcgatgatgcctcttgaagcctgtcctctct 26867541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 44337 - 44418
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||| ||||||||||| |||||| ||||||||| |||||||| ||| |||| ||||||| |||||| ||||| ||||||    
T  44337 aataaaatttgagtttggctgcatagtatggaggtttcccggggtaccaacctaattgggatttcggtgtttccttttgatg 44418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 10568378 - 10568293
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||| ||| | |||||||||| ||||||||| | |||| || | ||||||||||  ||||||||||||    
T  10568378 gagtttggcggcataggatggaagtttctcggggtgccaacctagttggtaagtcgatgttgcctcttgatgtctgtcctctctcc 10568293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 448
Target Start/End: Original strand, 9078806 - 9078885
Alignment:
Q  372 atgttccaaaacaagtaaaaag-ggggaaatgtgaaataaagg--aaacaacttacaattttgtcaaatagttctcctcc 448  Q
    |||||||||||||||||||||  |||||||| ||||  ||||   |||||||||||||||||||||||||||||||||||    
T  9078806 atgttccaaaacaagtaaaaaatggggaaatatgaataaaagatcaaacaacttacaattttgtcaaatagttctcctcc 9078885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 448
Target Start/End: Original strand, 9087583 - 9087662
Alignment:
Q  372 atgttccaaaacaagtaaaaag-ggggaaatgtgaaataaagg--aaacaacttacaattttgtcaaatagttctcctcc 448  Q
    |||||||||||||||||||||  |||||||| ||||  ||||   |||||||||||||||||||||||||||||||||||    
T  9087583 atgttccaaaacaagtaaaaaatggggaaatatgaataaaagatcaaacaacttacaattttgtcaaatagttctcctcc 9087662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 43856117 - 43856173
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||    
T  43856117 tgagtttggcggcacaggatggaggttctgcggggtgccaacctagttgggatgtcg 43856173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 16889972 - 16890059
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||| |||||||||  | |||||||||| |||||||||||||||| || |  ||| |||||  ||||||||||||    
T  16889972 ttgagtttggcggcataagatggaggtatctcggggtgccaacctagttgggatgtcgatgatgactcctgatgcctgtcctctctcc 16890059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 45268913 - 45268828
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||| ||||||| | |||||||||| ||| ||||| | |||| || | ||||||||||  ||||||||||||    
T  45268913 gagtttggcggcataggaaggaggtttctcggggtgccaacctggttggtaagtcgatgttgcctcttgatgcctgtcctctctcc 45268828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 29840865 - 29840916
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||||||| |||||||||| | |||||||||| ||||||||||||||||    
T  29840865 ttggcggcatatgatggaggtttctcggggtgccaacctagttgggatgtcg 29840916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 26393418 - 26393352
Alignment:
Q  270 gtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttg 336  Q
    |||||||||||||||||||||||| | ||||||| || | |||||||||||||| || || ||||||    
T  26393418 gtttggcggcataggatggaggtttcgcggggtggcaacttagttgggatgtcgttgttttctcttg 26393352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 6001422 - 6001507
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||| |||||||| ||||| | || |||| || ||||||||| |||||| || | |||||| ||| |||||||||||||    
T  6001422 gagtttggcggtataggatgaaggtttctcgcggtgtcaacctagttggaatgtcgatgttgcctcttaatgtttgtcctctctcc 6001507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 10568586 - 10568537
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgt 165  Q
    ||||||||||||||||||||| | || ||||||| |||||||||||||||    
T  10568586 ttctttcgggatagatgtggtttacctaactacagatttccttaatctgt 10568537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 19742051 - 19742100
Alignment:
Q  277 ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    |||| |||||||||| | |||||||||||| |||||||||||||||||||    
T  19742051 ggcacaggatggaggcttcccggggtgccaacctagttgggatgtcggtg 19742100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 43848181 - 43848109
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||| ||||||||||||||||  |||||  |||||||||| |||||||||||||| | || |||| |||||||    
T  43848181 tgagattggcggcataggatgagggttctgcggggtgccaacctagttgggatgttgttgcttccccttgatg 43848109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 9078761 - 9078804
Alignment:
Q  38 tcttaatatgcaaacatcaatatactttgagaaacacaacttca 81  Q
    |||| |||||||||||| |||||| |||||||||||||||||||    
T  9078761 tctttatatgcaaacattaatatattttgagaaacacaacttca 9078804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 9087538 - 9087581
Alignment:
Q  38 tcttaatatgcaaacatcaatatactttgagaaacacaacttca 81  Q
    |||| |||||||||||| |||||| |||||||||||||||||||    
T  9087538 tctttatatgcaaacattaatatattttgagaaacacaacttca 9087581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 16932651 - 16932556
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| ||||| ||||||| |||||||||  ||||  |||||||||| | ||||||| |||||| || |||  |||||||  ||||||||||||    
T  16932651 aataaaatttgagattggcggtataggatgggagttcatcggggtgccaacatagttggaatgtcgttgtttctccttgatgtatgtcctctctcc 16932556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 21499420 - 21499362
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    |||||||||||| |||||| ||||||  | | ||||||| |||||||||||||||||||    
T  21499420 gagtttggcggcgtaggattgaggttttctgcggtgccaacctagttgggatgtcggtg 21499362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 14413337 - 14413422
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| |||| ||| |||||||||||  | || ||||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  14413337 gagtgtggcagcagaggatggaggtgtctcgaggtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 14413422  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 25328832 - 25328795
Alignment:
Q  119 tttcgggatagatgtggtcttccaaactacaaatttcc 156  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  25328832 tttcgtgatagatgtggtcttccaaactacagatttcc 25328795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 29250320 - 29250256
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctc 333  Q
    |||||||||||||||||| ||||||| ||| || ||||| ||||||||| ||| ||||| ||||||    
T  29250320 gagtttggcggcataggacggaggtttccc-ggatgccaacctagttggtatgccggtgtttcctc 29250256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 40263730 - 40263681
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgt 321  Q
    ||||||||||||||||| |||||  | |||||||| ||||||||||||||    
T  40263730 ttggcggcataggatgggggttctgcagggtgccaacctagttgggatgt 40263681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 44207 - 44247
Alignment:
Q  129 gatgtggtcttccaaactacaaatttccttaatctgtggta 169  Q
    ||||||||||||| ||||||| ||||||||| |||||||||    
T  44207 gatgtggtcttcctaactacatatttccttagtctgtggta 44247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 16043722 - 16043682
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgcca 306  Q
    |||||||||||||||||||||||||||| | | ||||||||    
T  16043722 ttgagtttggcggcataggatggaggtttcgcagggtgcca 16043682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 41600724 - 41600808
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    |||||| ||||||||||||| | ||| | ||||||||||  ||||||||||| ||| || | ||||||||||  ||||| |||||    
T  41600724 gagtttagcggcataggatgaaagtttctcggggtgccaatctagttgggatatcgatgttgcctcttgatgcatgtccactctc 41600808  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 1051395 - 1051310
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  1051395 gagtttggcggcttaggatggaggtttcccgaggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctcc 1051310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 16309745 - 16309658
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||  | | ||||||||||  ||||||||||||    
T  16309745 ttgagtttggcggcataggatggaggttctccggggtgccaacttagttgggatgtcgaagctacctcttgatgtctgtcctctctcc 16309658  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 18490739 - 18490652
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||  | | ||||||||||  ||||||||||||    
T  18490739 ttgagtttggcggcataggatggaggttctccggggtgccaacttagttgggatgtcgaagctacctcttgatgtctgtcctctctcc 18490652  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 25760020 - 25760105
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||| ||||||||||||||||  |||  |||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  25760020 gagtttggcagcataggatggaggttttccgaagtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcc 25760105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 10623301 - 10623242
Alignment:
Q  280 ataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  10623301 ataggatggaggttccccggggtgccaacctagttaggatgtcggtgtttcctcttgatg 10623242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 26430257 - 26430342
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||    |||||||||| ||||||| |||||||| || | ||||||||||  ||||||||||||    
T  26430257 gagtttggcggcataggatggaggtattacggggtgccaacctagttaggatgtcgatgatgcctcttgatgtatgtcctctctcc 26430342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 26954029 - 26953944
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||| ||||||||||  | | | ||||| ||||||||||||||||||| ||||||||||||  |||| |||||||    
T  26954029 gagtttggcggcatatgatggaggttttctgagatgccaacctagttgggatgtcggtgtttcctcttgatgcatgtcgtctctcc 26953944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 19185066 - 19185166
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggt 357  Q
    ||||||| |||||||||| || |||||||||  ||||  |||||||||| |||||||||||||||| || |||  |||||||  |||||||||||| |||    
T  19185066 aataaaatttgagtttggtggtataggatgggagttcttcggggtgccaacctagttgggatgtcgttgcttctccttgatgcctgtcctctctcctggt 19185165  T
Q  358 t 358  Q
    |    
T  19185166 t 19185166  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 16037957 - 16038042
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||  | |||||| ||| |||||||| ||||||| || | ||||||||||  |||| |||||||    
T  16037957 gagtttggcggcataggatggaggtctctcggggttccaacctagttgagatgtcgatgatgcctcttgatgtctgtcatctctcc 16038042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 16041502 - 16041587
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||  | |||||| ||| |||||||| ||||||| || | ||||||||||  |||| |||||||    
T  16041502 gagtttggcggcataggatggaggtctctcggggttccaacctagttgagatgtcgatgatgcctcttgatgtctgtcatctctcc 16041587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 19826490 - 19826413
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtc 345  Q
    |||||||||||||||||| ||||||| |  ||||||||| |||||||||||||||| || | |||||| ||| |||||    
T  19826490 gagtttggcggcataggacggaggtttcttggggtgccaacctagttgggatgtcgatgttgcctcttaatgcttgtc 19826413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 51661680 - 51661751
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||| |||||||||||||||  | | |||||||||| |||||||||||||||| || | ||||||||||    
T  51661680 gagtttgacggcataggatggagagttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatg 51661751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 47165959 - 47165893
Alignment:
Q  273 tggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||| |  | |||||||||| |||||||||||||||| || | ||||||||||    
T  47165959 tggcggcataggatggagttctctcggggtgccaacctagttgggatgtcgatgatgcctcttgatg 47165893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 3736481 - 3736566
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| |||| ||| |||||||||||  | |||||||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  3736481 gagtgtggcagcagaggatggaggtgtctcggggtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 3736566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 16053453 - 16053538
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||| |||||||||||||||| | |||| || || |||||||| ||||||| || | ||||||||||  |||| |||||||    
T  16053453 gagtttggcagcataggatggaggtttctcgggatgtcaacctagttgagatgtcgatgatgcctcttgatgtctgtcatctctcc 16053538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 18517678 - 18517763
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| ||||||||||||||| |  | |||| ||||| |||||||||||||||| || | ||||||||||  ||||| ||||||    
T  18517678 gagtttgacggcataggatggagctatctcgggatgccaacctagttgggatgtcgatgttgcctcttgatgcatgtccactctcc 18517763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 19256125 - 19256197
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgat 338  Q
    |||||||||||| ||||| |||||| ||   |||||||||| ||||||| |||||||| || |||||||||||    
T  19256125 ttgagtttggcgacatagaatggagattttgcggggtgccaacctagttaggatgtcgttgtttcctcttgat 19256197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 27943680 - 27943628
Alignment:
Q  279 cataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcc 331  Q
    |||||||||||||||||  ||||||| | ||||||||||||||||||| ||||    
T  27943680 cataggatggaggttccatggggtgctaacctagttgggatgtcggtgtttcc 27943628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 33537305 - 33537380
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcct 347  Q
    ||||||||||||||| | |||||| || ||||||| ||||||||| ||||||  | || ||||||||| |||||||    
T  33537305 ttggcggcataggattggggttcctcgaggtgccaacctagttggaatgtcgtcgctttctcttgatgtttgtcct 33537380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 3569478 - 3569551
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||| |||||||||||||||||||||| |  ||| ||||| ||||||| | ||| || || ||||||||||||    
T  3569478 ttgagcttggcggcataggatggaggtttcgtgggatgccaacctagttagaatgccgttgtttcctcttgatg 3569551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 20952399 - 20952443
Alignment:
Q  279 cataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||| |||||  |||||||||| ||||||||||||||||    
T  20952399 cataggatgggggttctgcggggtgccaacctagttgggatgtcg 20952443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 16816322 - 16816217
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggt 357  Q
    ||||||| ||||||||| | ||||||||||||||||||||| || |||| |||||||||||||| |||| ||||||||||||  ||||| ||||||||||    
T  16816322 aataaaatttgagtttgactgcataggatggaggttccccgaggcgccaacctagttgggatgttggtgtttcctcttgatgcatgtccactctcccggt 16816223  T
Q  358 tcatcc 363  Q
    | ||||    
T  16816222 ttatcc 16816217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 19054473 - 19054392
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||| |||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  19054473 aataaaatttgagtgtggctgtataggatggaggttccccggggtgccaacctagttgggatgtcggtgtttcctcttgatg 19054392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 34528997 - 34528926
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||    
T  34528997 gagtttggcggcataggatggaggtttcccggggtgccaacctagttgggatgtcgctgtttcctcttgatg 34528926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 18332781 - 18332702
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtc 345  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || || ||||| ||| |||||    
T  18332781 ttgagtttggcggcataggatggaggttctccggggtgccaacctagttgggatgtcgatgttttctcttaatgcttgtc 18332702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 27035932 - 27035845
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||||  | |||| ||||| |||||||||||||||| || | |||||||||| |||||||||||||    
T  27035932 ttgagtttggcggcataggatggaggtctctcgggatgccaacctagttgggatgtcgatgatgcctcttgatgcttgtcctctctcc 27035845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 10433194 - 10433282
Alignment:
Q  265 attgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||||||| ||||| ||||||||||| ||| ||||| | ||||||||||||||||||| |||||||||||| ||||||| |||||    
T  10433194 attgtgtttggcagcatatgatggaggttctccgaggtgcaaacctagttgggatgtcggtgcttcctcttgatgcttgtcctttctcc 10433282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 21487915 - 21487829
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||    ||||||||||||  ||||| ||||||    
T  21487915 tgagtttggcggcataggatgggggttcttcggggtgccaacctagttgggatgtcgtcacttcctcttgatgcctgtccactctcc 21487829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 10423879 - 10423794
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||  |||||| |||||||||| | |||||||||| |||||||||||||||| || | |||||||||| |||||| ||||||    
T  10423879 gagtttgagggcataagatggaggtttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatgcttgtccactctcc 10423794  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 358
Target Start/End: Complemental strand, 13309456 - 13309367
Alignment:
Q  269 agtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggtt 358  Q
    ||||||||||| ||||||||||||  | |||||||||| |||||||||||||||| || | ||||||||||  ||||| |||||| ||||    
T  13309456 agtttggcggcttaggatggaggtctctcggggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctcctggtt 13309367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 43021814 - 43021729
Alignment:
Q  268 gagtttggcggcataggatggagg-ttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||  |||  |||||||| || |||||||||  |||||||||||    
T  43021814 gagtttggcggcataggatggaggtttccccggggtgccaacctaagtggtttgtcggtgttttctcttgatgcatgtcctctctc 43021729  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 16816455 - 16816395
Alignment:
Q  104 ttaggctcggacttctttcgggatagatgtggtcttccaaactacaaatttccttaatctg 164  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  16816455 ttaggctctgacttttttcgtgatagatgtggtcttccaaactacatatttccttagtctg 16816395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 12629327 - 12629248
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcct 347  Q
    |||||||||||||||||| ||||||| |||||| |||||  |||||||||||||||||| || |||  |||| |||||||    
T  12629327 gagtttggcggcataggacggaggtttcccgggatgccaatctagttgggatgtcggtgttttctcccgatgtttgtcct 12629248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 33012744 - 33012839
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| ||||| ||||||| |||||||||  ||||  || ||||||| |||||||||||||||| || |||  ||||||| |||||||||||||    
T  33012744 aataaaatttgagattggcggtataggatgggagttcaacgaggtgccaacctagttgggatgtcgttgcttctccttgatgtttgtcctctctcc 33012839  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 19088874 - 19088959
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||| |||||||||| |||  ||| ||| |||| ||| |||||| ||| ||||||||||||  ||||||||||||    
T  19088874 gagtttggcggcataagatggaggtttcccaaggttccaacctaattgagatgtcagtgtttcctcttgatgcatgtcctctctcc 19088959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 41574376 - 41574292
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||||||||||  || ||||| || |||||||||||||| |||| ||||| ||||||  |||||| |||||    
T  41574376 gagtttggcggcataggatggaggtt-tccagggtgtcaacctagttgggatgttggtgtttccttttgatgtctgtcctttctcc 41574292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 17122828 - 17122884
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||||||||||  |||||  |||||||||| ||||||||||||||||    
T  17122828 tgagtttggcggcataggatgagggttctgcggggtgccaacctagttgggatgtcg 17122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 33064899 - 33064827
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||| ||||||| ||||||||| |||||  |||||||||| |||||||||||||||| || |||| |||||||    
T  33064899 tgagattggcggtataggatgggggttctgcggggtgccaacctagttgggatgtcgttgcttccccttgatg 33064827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 10032162 - 10032095
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||| || ||  |||||||  || ||||||||||||||||||| ||||||||||||    
T  10032162 ttggcggcataggatgaagtttttccggggtatcaacctagttgggatgtcggtgtttcctcttgatg 10032095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 15114220 - 15114141
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtc 345  Q
    ||||||||||| |||||||||||||||| || ||||||| | |||| |||| ||||| ||| |||||| ||||| |||||    
T  15114220 ttgagtttggctgcataggatggaggtttcctggggtgctaacctaattggcatgtcagtgtttcctcctgatgtttgtc 15114141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 15120944 - 15120865
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtc 345  Q
    ||||| ||||| |||||||||||||||| |||||||||| | |||| |||| ||||| ||| |||||| ||||| |||||    
T  15120944 ttgagcttggcagcataggatggaggtttcccggggtgctaacctaattggcatgtcagtgtttcctcctgatgtttgtc 15120865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 15127236 - 15127157
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtc 345  Q
    ||||||||||| |||||||||||||||| || ||||||| | |||| |||| ||||| ||| |||||| ||||| |||||    
T  15127236 ttgagtttggctgcataggatggaggtttcctggggtgctaacctaattggcatgtcagtgtttcctcctgatgtttgtc 15127157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 15145132 - 15145053
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtc 345  Q
    ||||| ||||| |||||||||||||||| |||||||||| | |||| |||| ||||| ||| |||||| ||||| |||||    
T  15145132 ttgagcttggcagcataggatggaggtttcccggggtgctaacctaattggcatgtcagtgtttcctcctgatgtttgtc 15145053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 41917077 - 41917131
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgt 321  Q
    |||| ||| ||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  41917077 tgagattgacggcataggatgggggttctccggggtgccaacctagttgggatgt 41917131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 907737 - 907652
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||  | | ||||||||  ||||||||||||||| || |  |||||||||  |||| |||||||    
T  907737 gagtttggcggcataggatggaggtctctcagggtgccaatctagttgggatgtcgatgatgtctcttgatgtctgtcatctctcc 907652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 3833495 - 3833446
Alignment:
Q  277 ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    ||||||||| ||||| | |||||||||||| |||||||||||||||||||    
T  3833495 ggcataggacggaggcttcccggggtgccaacctagttgggatgtcggtg 3833446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 34517679 - 34517756
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtc 345  Q
    ||||||||| |||||||||||||||| | |||| ||||| |||  ||||||||||| || ||| |||||||| |||||    
T  34517679 gagtttggcagcataggatggaggtttctcgggatgccaaccttattgggatgtcgatgtttcttcttgatgcttgtc 34517756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 24230171 - 24230271
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggt 357  Q
    ||||||| |||| ||||| ||||||||||||   |||  ||||||| || |||||||||||||||| || |||  |||||||  |||||||||||| |||    
T  24230171 aataaaatttgaatttggaggcataggatgggaattcatcggggtgtcaacctagttgggatgtcgttgcttctccttgatgcctgtcctctctcctggt 24230270  T
Q  358 t 358  Q
    |    
T  24230271 t 24230271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 2583159 - 2583072
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||| || ||||||  |  | ||||||| | |||||||||||||| || | ||||||||||  ||||||||||||    
T  2583159 ttgagtttggcggcatacgacggaggtctcttgaggtgccaacttagttgggatgtcgatgatgcctcttgatgtctgtcctctctcc 2583072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 21813163 - 21813218
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| ||| ||||||||||||||||  | |||||||||| ||||||||||||||||    
T  21813163 gagtgtggtggcataggatggaggtgtctcggggtgccaacctagttgggatgtcg 21813218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 9266154 - 9266081
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||||||  |||| || |  ||||||| || ||||| || |||| |||||||    
T  9266154 ttgagtttggcggcataggatggaggttcttcgggttgtctacctagtttgggtgtcgttgcttccccttgatg 9266081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 11779403 - 11779318
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| ||||| ||||||||| || | |||||||||| |||| |||||||  || || | ||||||||||  ||||||||||||    
T  11779403 gagtttgacggcagaggatggagtttactcggggtgccaacctaattgggataccgatgttgcctcttgatgtctgtcctctctcc 11779318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 15318160 - 15318104
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||||||||||||||||||| |||||  | ||||||||  |||||||||||||||    
T  15318160 ttgagtttggcggcataggatgggggttctgc-gggtgccaatctagttgggatgtcg 15318104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 16280431 - 16280516
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||| ||||||||||||||||  | ||||||||||  ||| ||||||||||| || | || ||||||| |||||| ||||||    
T  16280431 gagtgtggtggcataggatggaggtgtctcggggtgccaatctaattgggatgtcgatgatgccgcttgatgtttgtccactctcc 16280516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 20149951 - 20149914
Alignment:
Q  124 ggatagatgtggtcttccaaactacaaatttccttaat 161  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  20149951 ggatagatgtggtcttccaaactacagatttccctaat 20149914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 23487455 - 23487536
Alignment:
Q  272 ttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||  | |||||| |||  |||||||| |||||| || | |||| |||||  ||||||||||||    
T  23487455 ttggcggcataggatggaggtatctcggggtaccaatctagttggaatgtcgatgatgcctcctgatgcctgtcctctctcc 23487536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 31893123 - 31893172
Alignment:
Q  277 ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    ||||||||||||||| | | |||| ||||| |||||||||||||||||||    
T  31893123 ggcataggatggaggcttctcgggatgccaacctagttgggatgtcggtg 31893172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 353
Target Start/End: Original strand, 26505887 - 26505967
Alignment:
Q  273 tggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||| ||||||| ||   |||||||||| ||||| |||  |||| ||| ||||||||||||  ||||||||||||    
T  26505887 tggcggcatacgatggagatttttcggggtgccaacctagctggtttgtcagtgtttcctcttgatgcatgtcctctctcc 26505967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 28522842 - 28522937
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| ||||| ||||||||||||||||||||||| |  |||||||| |||||||||||||||  || ||||||||||||  ||||||||||||    
T  28522842 aataaaatttgagattggcggcataggatggaggttctctagggtgccaacctagttgggatgtcaatgtttcctcttgatgtctgtcctctctcc 28522937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 40926538 - 40926468
Alignment:
Q  269 agtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || |||||| |||||    
T  40926538 agtttggcggcataggatggaggtttcccggggtgccaacctagttgggatgtcgatgtttcctcctgatg 40926468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 1490652 - 1490725
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||||||| ||| ||||||||||    
T  1490652 ttgagcttggcggcgtaggatggaggttctccggggtgacaacctagttgggatgtcggaggtccctcttgatg 1490725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 17151295 - 17151366
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||| ||| |||||| |||||    
T  17151295 gagtttggcggcataggatggaggtttcccggagtgccaacctagttggcatgtcagtgtttcctcctgatg 17151366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 20477425 - 20477510
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| |||||||||||||||||  | |||||||||| |||||||||||||||| || | ||||||||||  |||||| |||||    
T  20477425 gagtttgacggcataggatggaggtatctcggggtgccaacctagttgggatgtcgatgatgcctcttgatgtctgtcctttctcc 20477510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 28522698 - 28522750
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgtggt 168  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||||||    
T  28522698 ttctttcgggatatatgtggtcttccaaactacagatttccctaatctgtggt 28522750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 36802343 - 36802288
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||||||||||||||| | |||||||||| |||||||| |||||||    
T  36802343 gagtttggcggcataggatggaggtttctcggggtgccaacctagttgagatgtcg 36802288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 17679792 - 17679707
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||| ||||||||||||||||  | |||||||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  17679792 gagtgtggtggcataggatggaggtgtctcggggtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 17679707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 20374196 - 20374107
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccgg 356  Q
    |||||||||| ||||||||||| |||||  ||||||| || |||||||||||||||| || |||| |||||||  |||||  ||||||||    
T  20374196 tgagtttggcagcataggatgggggttctgcggggtggcaacctagttgggatgtcgttgcttccccttgatgtctgtccaatctcccgg 20374107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 22170044 - 22169959
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||  | |||| ||||| |||| ||||||||| | || | ||||||||||  ||||||||||||    
T  22170044 gagtttggcggcataggatggaggtctctcgggatgccaacctaattgggatgttgatgatgcctcttgatgcctgtcctctctcc 22169959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 13619165 - 13619101
Alignment:
Q  275 gcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||| ||| | ||||| ||||||||||||||  ||| ||||||||||||    
T  13619165 gcggcataggatggaggttctccgagttgccaacctagttgggatgttagtgtttcctcttgatg 13619101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 38242213 - 38242129
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    |||| ||||||||||||||| ||||  | |||||||||| |||||||||||||||| || | || ||||||| |||||| |||||    
T  38242213 gagtgtggcggcataggatgaaggtgtctcggggtgccaacctagttgggatgtcgatgataccgcttgatgcttgtccactctc 38242129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 25652970 - 25653040
Alignment:
Q  99 ctgaattaggctcggacttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgtggta 169  Q
    |||| ||| |||| || |||||||| ||||||||||||||||||||||| | ||||||||| ||| |||||    
T  25652970 ctgacttacgctctgatttctttcgagatagatgtggtcttccaaactaaagatttccttagtctatggta 25653040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 38376943 - 38376857
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||   | || ||||||| ||||||| |||||||| || | ||||||||||  ||||| ||||||    
T  38376943 tgagtttggcggcataggatggaggcctctcgaggtgccaacctagttaggatgtcgatgatacctcttgatgcatgtccactctcc 38376857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 6083733 - 6083802
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctctt 335  Q
    ||||||||| ||||||| ||||||||||  ||| | ||||| |||||| |||||||||||| ||||||||    
T  6083733 ttgagtttgacggcatatgatggaggttttccgagatgccaacctagtcgggatgtcggtgtttcctctt 6083802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 12102809 - 12102894
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||| || || | |||| | ||| | |||||||||||||| || | ||||||||||  ||||||||||||    
T  12102809 gagtttggcggcataggatgaagatttctcgggataccaacatagttgggatgtcgatgttgcctcttgatgtatgtcctctctcc 12102894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 17377584 - 17377499
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||| ||||||||||||||| |  ||||||||| |||||||| ||| ||| || | ||||||||||  ||||| ||||||    
T  17377584 gagtttggcgtcataggatggaggtttcttggggtgccaacctagttgagatatcgttgttgcctcttgatgcatgtccactctcc 17377499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 28698031 - 28698076
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaat 161  Q
    ||||||||||||||||||||| | || |||||||||||||||||||    
T  28698031 ttctttcgggatagatgtggtttacctaactacaaatttccttaat 28698076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 34454890 - 34454975
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||||||||||| |  | |||||||||| |||| ||||||||||| || |  |||||||||  | ||||||||||    
T  34454890 gagtttggcggcataggatggagatgtctcggggtgccaacctaattgggatgtcgatgatgtctcttgatgcctctcctctctcc 34454975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 20434261 - 20434205
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||||||||||| ||||   |||||||||| |||||||| |||||||    
T  20434261 tgagtttggcggcataggatgggggttttgcggggtgccaacctagttgtgatgtcg 20434205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 17678367 - 17678296
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||| ||||||||||||||||||||  | || ||||||| |||| ||||||||||| || | ||||||||||    
T  17678367 gagtgtggcggcataggatggaggtctctcgaggtgccaacctaattgggatgtcgatgatgcctcttgatg 17678296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 24524154 - 24524099
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| |||||||||||||||||| |  | |||||||||| ||||||||||||||||    
T  24524154 gagtctggcggcataggatggagatgtctcggggtgccaacctagttgggatgtcg 24524099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 26916628 - 26916683
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| |||||||||||||||||| |  | |||||||||| ||||||||||||||||    
T  26916628 gagtctggcggcataggatggagatgtctcggggtgccaacctagttgggatgtcg 26916683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 27206462 - 27206407
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgt 321  Q
    ||||| ||| ||||||||||||| |||||  |||||||||| ||||||||||||||    
T  27206462 ttgagattgacggcataggatgggggttctgcggggtgccaacctagttgggatgt 27206407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 28948870 - 28948929
Alignment:
Q  268 gagtttggc-ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    ||||||||| |||| |||| ||||||| |||||||||||| | |||||||||||||||||    
T  28948870 gagtttggcaggcagaggacggaggtttcccggggtgccaacatagttgggatgtcggtg 28948929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 29216601 - 29216688
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||| |||||||||||||  | |  ||||||| | || ||||||||||| || | ||||||||||  ||||||||||||    
T  29216601 ttgagtttggcggtataggatggaggtctctctaggtgccaacttaattgggatgtcgatgatgcctcttgatgcatgtcctctctcc 29216688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 29329900 - 29329987
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||| |||||||||||||  | |  ||||||| | || ||||||||||| || | ||||||||||  ||||||||||||    
T  29329900 ttgagtttggcggtataggatggaggtctctctaggtgccaacttaattgggatgtcgatgatgcctcttgatgcatgtcctctctcc 29329987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 24270895 - 24270841
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtc 322  Q
    ||||||| | |||||||||||||||| ||||  |||||| |||||||||||||||    
T  24270895 gagtttgacagcataggatggaggtttcccgcagtgccaacctagttgggatgtc 24270841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 24297342 - 24297395
Alignment:
Q  269 agtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtc 322  Q
    |||||| | |||||||||||||||| ||||  |||||| |||||||||||||||    
T  24297342 agtttgacagcataggatggaggtttcccgcagtgccaacctagttgggatgtc 24297395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 32234495 - 32234446
Alignment:
Q  277 ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtg 326  Q
    ||||||||| ||||| | |||| ||||||| |||||||||||||||||||    
T  32234495 ggcataggacggaggcttcccgaggtgccaacctagttgggatgtcggtg 32234446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 358
Target Start/End: Complemental strand, 3914333 - 3914233
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggt 357  Q
    ||||||| ||||| ||| ||| ||||||||   ||||  |||||||||| |||||||||||||||| || |||  |||||||  || |||||||| ||||    
T  3914333 aataaaatttgagattgacggtataggatgagagttcatcggggtgccaacctagttgggatgtcgttgcttctccttgatgtctgccctctctctcggt 3914234  T
Q  358 t 358  Q
    |    
T  3914233 t 3914233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 3064 - 2959
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggt 357  Q
    ||||||| |||||| ||| || ||||||||||||||||||||| ||||| |||| | |||||||||||| ||||||||||||  ||||| | ||||||||    
T  3064 aataaaatttgagtgtggtggtataggatggaggttccccgggatgccaacctaatcgggatgtcggtgtttcctcttgatgcatgtccacgctcccggt 2965  T
Q  358 tcatcc 363  Q
    | ||||    
T  2964 ttatcc 2959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 34658001 - 34657920
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||| |||||| |||  | ||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  34658001 aataaaatttgagtgtggttgtataggatagaggttccccggggtgccaacctagttgggatgtcggtgtttcctcttgatg 34657920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 37005967 - 37005894
Alignment:
Q  280 ataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||| ||||||| ||||||||||| |||| |||||||||||||| ||||||||||||  ||||||||||||    
T  37005967 ataggatagaggttctccggggtgccaacctaattgggatgtcggtgcttcctcttgatgcatgtcctctctcc 37005894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 11416053 - 11415968
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||| |||||| |||| ||||  || |||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||    
T  11416053 gagtttggcagcatagaatgggggttttccagggtgccaacttagttgggatgtcggtgtttccttttgatgtttgtcctctctcc 11415968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 39406895 - 39406824
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||| | |||| || | ||||||||||    
T  39406895 gagtttggcggcataggatggaggtttctcggggtgccaacctagttggtaagtcgatgttgcctcttgatg 39406824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 44673753 - 44673682
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||||||| ||   |||||||||| |||||||||||||||| || | ||||||||||    
T  44673753 gagtttggcggcataggatggagattttgcggggtgccaacctagttgggatgtcgatgttgcctcttgatg 44673682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 8667175 - 8667091
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||||||||||||||||||| | |||||| ||| ||||||| |||||||| || | ||||||||||  ||||| ||||||    
T  8667175 gagtttggcggcataggatggaggtttctcggggt-ccaacctagttaggatgtcgatgttgcctcttgatgcctgtccactctcc 8667091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 19298877 - 19298816
Alignment:
Q  279 cataggatggaggttccccgggg-tgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||| ||| ||||||||||||    
T  19298877 cataggatggaggttccccgggggtgccaacctagttgagatgtcagtgtttcctcttgatg 19298816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 11485276 - 11485220
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||||||||||||||||||||||||   | |||||||||| ||||||||||||||||    
T  11485276 tgagtttggcggcataggatggaggcctctcggggtgccaacctagttgggatgtcg 11485220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 23795462 - 23795541
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcct 347  Q
    ||||||| |||||||||||||||||| | | || ||||| ||||||||||||||||||  || ||| ||||| |||||||    
T  23795462 gagtttgacggcataggatggaggtttcacaggatgccaacctagttgggatgtcggtattttctcctgatgtttgtcct 23795541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 25219653 - 25219724
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||  ||| ||| |||| ||||||| ||||||||| ||||||||| |||||| |||||    
T  25219653 gagtttggcggcatagggcggaagtttcccgaggtgccaacctagttggaatgtcggtgtttcctcctgatg 25219724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 33040652 - 33040597
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||| ||||||| |||||||||| | |||||||||| ||||||||||||||||    
T  33040652 gagtttgacggcatatgatggaggtttctcggggtgccaacctagttgggatgtcg 33040597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 34512060 - 34512150
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggtt 358  Q
    ||||||||| || ||| ||| ||||  |||||||||||| |||||||||||||||| || | ||||||||||  ||||| |||||| ||||    
T  34512060 gagtttggcagcgtagaatgaaggtctcccggggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctcctggtt 34512150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 1924732 - 1924647
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||| ||||||||||||||||  | |||||||||| |||||||||||||||| || | | |||||||| || ||| ||||||    
T  1924732 gagtgtggtggcataggatggaggtgtctcggggtgccaacctagttgggatgtcgatgatacatcttgatgtttttccactctcc 1924647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 3007527 - 3007482
Alignment:
Q  113 gacttctttcgggatagatgtggtcttccaaactacaaatttcctt 158  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  3007527 gacttctttagggatagatgtggacttccaaactacagatttcctt 3007482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 4936023 - 4936096
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||  || |||| ||||| | |||||||||| | |||||||||||||| || ||||||||||||    
T  4936023 ttgagtttggcggtgtatgatgaaggtttcgcggggtgccaacttagttgggatgtcgatgtttcctcttgatg 4936096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 18234240 - 18234297
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| ||||||||||||||||||||||  | |||||||||| ||||||||| ||||||    
T  18234240 ttgaatttggcggcataggatggaggtatctcggggtgccaacctagttggaatgtcg 18234297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 39407061 - 39407012
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgt 165  Q
    ||||||||||||||||||||| | || ||||||| |||||||||||||||    
T  39407061 ttctttcgggatagatgtggtttacctaactacatatttccttaatctgt 39407012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 6192585 - 6192640
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||||||||||||| |||||||||  | || ||||||| ||||||||||||||||    
T  6192585 gagtttggcggcataagatggaggtatctcgaggtgccaacctagttgggatgtcg 6192640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 18487445 - 18487515
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttga 337  Q
    ||||||||||||||||||||| || ||| | |||||||||| |||| || |||||||| || ||||||||||    
T  18487445 ttgagtttggcggcataggatagatgtttcgcggggtgccaacctaatt-ggatgtcgttgtttcctcttga 18487515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 20380465 - 20380427
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaattt 154  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  20380465 ttctttcgggatagatgtggacttcctaactacaaattt 20380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 3007361 - 3007276
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||||||||||||||||||||  | |||||| ||| ||||||||||||| || || | ||  |||||| |||||| ||||||    
T  3007361 gagtgtggcggcataggatggaggtgtctcggggtaccaacctagttgggatgacgatgataccgtttgatgtttgtccactctcc 3007276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 15159402 - 15159483
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcct 347  Q
    |||| |||||||||||||| |||||||| | ||| ||| || | |||||||||||||| || ||||| |||||  |||||||    
T  15159402 ttgattttggcggcataggttggaggtttcgcggagtgtcaacttagttgggatgtcgttgtttccttttgatatttgtcct 15159483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 41068856 - 41068928
Alignment:
Q  268 gagtttggc-ggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||| ||||||||| ||||| | |||||| ||||| || |||||||||||||||| | |||| |||||    
T  41068856 gagtttggcaggcataggacggaggcttcccgggatgccaacccagttgggatgtcggtgttgcctcatgatg 41068928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 2297 - 2226
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||| ||||||||||||  |||||||| | ||||||| ||||| ||||||    
T  2297 gagtttggcggcataggatggaggtttcccggggtgccaatctagttggaacgtcggtgtttccttttgatg 2226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1667 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1667
Description:

Target: scaffold1667; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 783 - 710
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||||||  || ||||||| |||||| ||||||||| || || |||||||||    
T  783 ttgagtttggcggcataggatggaggttcttcgaggtgccaacctagtcgggatgtcgttgctttctcttgatg 710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 2780 - 2853
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||||| | || ||| ||| |||||||||||||||| || | ||||||||||    
T  2780 ttgagtttggcggcataggatggaggtttctcgaggtaccaacctagttgggatgtcgatgttgcctcttgatg 2853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 8086 - 8005
Alignment:
Q  258 aataaaaattgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||| ||||||||||| ||||| || ||||||| |||||| |||||  |||||||||||||||||  ||||||||||||    
T  8086 aataaaatttgagtttggctgcatatgagggaggtttcccgggatgccaatctagttgggatgtcggtatttcctcttgatg 8005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 8225 - 8181
Alignment:
Q  125 gatagatgtggtcttccaaactacaaatttccttaatctgtggta 169  Q
    ||||||||||||||||| ||||||| |||||| || |||||||||    
T  8225 gatagatgtggtcttcctaactacagatttccatagtctgtggta 8181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 20856 - 20929
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||||||||||||||||||||||  || ||||||| |||||| ||||||||| || || |||||||||    
T  20856 ttgagtttggcggcataggatggaggttcttcgaggtgccaacctagtcgggatgtcgttgctttctcttgatg 20929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 385 - 302
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctct 351  Q
    |||||||||||||||||||||||||| | ||||||||||  |||||||| | |||| || | ||||||||||  ||||||||||    
T  385 gagtttggcggcataggatggaggtttctcggggtgccaaactagttggtaagtcgatgttgcctcttgatgcatgtcctctct 302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 103706 - 103777
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||| ||||||||||||||| || | |||||||||| |||||||||||||||| || | ||||||||||    
T  103706 gagtttgacggcataggatggagatttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatg 103777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 55854 - 55769
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||| ||||||||||||||||    |||||||||| |||||||||||||||| || | || |||||||  ||||| ||||||    
T  55854 gagtgtggtggcataggatggaggtgtgtcggggtgccaacctagttgggatgtcgatgatgccgcttgatgtctgtccactctcc 55769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 52710 - 52774
Alignment:
Q  269 agtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctc 333  Q
    ||||||| || |||||| ||||||| |||  ||||||| |||||||||||| |||||| ||||||    
T  52710 agtttggtggtataggacggaggtttcccaaggtgccaacctagttgggatttcggtgtttcctc 52774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 41314 - 41225
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccgg 356  Q
    |||||||||||||||||||||  |||||  |||||||||| |||||||||||| ||| || |||| |||||||  |||||  ||||||||    
T  41314 tgagtttggcggcataggatgagggttctgcggggtgccaacctagttgggatttcgttgcttccccttgatgcatgtccaatctcccgg 41225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 21947 - 21881
Alignment:
Q  273 tggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||||  | |||| ||||| |||||||||||||||| || | ||||||||||    
T  21947 tggcggcataggatggaggtctctcgggatgccaacctagttgggatgtcgatgatgcctcttgatg 21881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 16024 - 16109
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||||||||||| ||||||||  | ||| |||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  16024 gagtgtggcggcatagcatggaggtgtctcggagtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 16109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 129421 - 129506
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||| ||||||||||||||||  | |||||||||| |||||||||||||||| || |  ||||||||| || ||| ||||||    
T  129421 gagtgtggtggcataggatggaggtgtctcggggtgccaacctagttgggatgtcgatgatgactcttgatgtttttccactctcc 129506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 129258 - 129303
Alignment:
Q  113 gacttctttcgggatagatgtggtcttccaaactacaaatttcctt 158  Q
    ||||||||| | ||||||||||||||||| ||||||| ||||||||    
T  129258 gacttctttagagatagatgtggtcttccgaactacagatttcctt 129303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 36750 - 36665
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    ||||||||||||||| | |||||||| | || ||| ||| |||||||||||||||| || | ||||||||||  ||| ||||||||    
T  36750 gagtttggcggcataagttggaggtttctcgaggtaccaacctagttgggatgtcgatgttgcctcttgatgtatgtactctctcc 36665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 307238 - 307323
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| ||| ||||||||||||||||  | |||||||||| |||||||||||||||| || |  ||||||||| || ||| ||||||    
T  307238 gagtgtggtggcataggatggaggtgtctcggggtgccaacctagttgggatgtcgatgatgactcttgatgtttttccactctcc 307323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 307075 - 307120
Alignment:
Q  113 gacttctttcgggatagatgtggtcttccaaactacaaatttcctt 158  Q
    ||||||||| | ||||||||||||||||| ||||||| ||||||||    
T  307075 gacttctttagagatagatgtggtcttccgaactacagatttcctt 307120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 26452 - 26535
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctc 352  Q
    ||||||| ||| |||||||||||||| |||||| ||||| ||||  |||||||| |||| ||||||| ||||  |||||||||||    
T  26452 gagtttgacggtataggatggaggtttcccgggatgccaaccta-atgggatgttggtgtttcctctcgatgcatgtcctctctc 26535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 13734 - 13781
Alignment:
Q  277 ggcataggatggaggttccccggggtgccatcctagttgggatgtcgg 324  Q
    ||||||||| ||| ||| |||||||||||| |||||||||||||||||    
T  13734 ggcataggacggaagtttcccggggtgccaacctagttgggatgtcgg 13781  T

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Target: scaffold0265 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 19646 - 19591
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| ||| ||||||||||||||||  | |||||||||| ||||||||||||||||    
T  19646 gagtgtggtggcataggatggaggtgtctcggggtgccaacctagttgggatgtcg 19591  T

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Target: scaffold0134 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 2481 - 2536
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| |||||||||||||||||| |  | |||||||||| ||||||||||||||||    
T  2481 gagtctggcggcataggatggagatgtctcggggtgccaacctagttgggatgtcg 2536  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 80333 - 80388
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgt 321  Q
    |||||| | |||||||||||||||| || | |||||||||| ||||||||||||||    
T  80333 ttgagtgtagcggcataggatggagatttcgcggggtgccaacctagttgggatgt 80388  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 4444 - 4510
Alignment:
Q  273 tggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    ||||||||||||||||||||  | || ||||||| |||||||||||||||  || | ||||||||||    
T  4444 tggcggcataggatggaggtctctcgaggtgccaacctagttgggatgtcaatgatacctcttgatg 4510  T

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Target: scaffold0196 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 793 - 835
Alignment:
Q  297 cggggtgccatcctagttgggatgtcggtggttcctcttgatg 339  Q
    |||||||||| ||||||||||||||||||| | ||||||||||    
T  793 cggggtgccaacctagttgggatgtcggtgttgcctcttgatg 835  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 3471 - 3417
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgt 321  Q
    |||| ||||||||||||||||| |||||  ||| |||||| ||||||||||||||    
T  3471 tgagattggcggcataggatgggggttctgcggagtgccaacctagttgggatgt 3417  T

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Target: scaffold0363 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 5374 - 5289
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||| |||| ||| |||||||||||  | || ||||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  5374 gagtgtggcagcagaggatggaggtgtctcgaggtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 5289  T

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Target: scaffold0236 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 6404 - 6485
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcct 347  Q
    ||||| ||||||||||| ||||||||||   |||||||||| |||| |||  |||||| |  |||||||||||| |||||||    
T  6404 ttgagattggcggcataagatggaggttaatcggggtgccaacctaattgaaatgtcgtttcttcctcttgatgcttgtcct 6485  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 2348 - 2299
Alignment:
Q  116 ttctttcgggatagatgtggtcttccaaactacaaatttccttaatctgt 165  Q
    ||||||||||||||||||||| | |  ||||||| |||||||||||||||    
T  2348 ttctttcgggatagatgtggtttacttaactacagatttccttaatctgt 2299  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 100977 - 101033
Alignment:
Q  268 gagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcggt 325  Q
    |||||||||||||||||| ||||||| ||| |||||||| ||| ||||| ||||||||    
T  100977 gagtttggcggcataggacggaggtttccc-gggtgccaacctggttggaatgtcggt 101033  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 173866 - 173923
Alignment:
Q  266 ttgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    ||||| ||||| ||||| |||||||||  | |||||||||| ||||||||||||||||    
T  173866 ttgagattggcagcataagatggaggtatctcggggtgccaacctagttgggatgtcg 173923  T

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Target: scaffold0292 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 21249 - 21305
Alignment:
Q  297 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 353  Q
    |||||||||| |||||||||||||||| || | ||||||||||  ||||| ||||||    
T  21249 cggggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctcc 21305  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 160305 - 160361
Alignment:
Q  267 tgagtttggcggcataggatggaggttccccggggtgccatcctagttgggatgtcg 323  Q
    |||| |||||||||||| |||| |||||  ||||||| || ||||||||||||||||    
T  160305 tgagattggcggcatagaatgggggttctgcggggtggcaacctagttgggatgtcg 160361  T

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