View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_low_21 (Length: 402)
Name: NF11778_low_21
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 2 - 391
Target Start/End: Complemental strand, 1369020 - 1368630
Alignment:
| Q |
2 |
ctgaaaacagagcttgcattttagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaactt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1369020 |
ctgaaaacagagcttgcattttagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttgcaactt |
1368921 |
T |
|
| Q |
102 |
cactacattcttactctttagaagtgctctccgaactaaatatcctctaattgaagcctggatgat-atcgcagcaaattctggaggattgacatccatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
1368920 |
cactacattcttactctttagaagtgctctccgaactaaatatcctctaattgaagcctggatgattatcgcagcagattctggaggattaacatccatc |
1368821 |
T |
|
| Q |
201 |
gtactctcaatttttgtgataattatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttct |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1368820 |
gtactctcaatttcggtgataattatttctggcatctctgagcatgcatcggaggataaccgcggcttcttattagagaaatatgttgtacaaatcttct |
1368721 |
T |
|
| Q |
301 |
cattggtggattctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
391 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1368720 |
cattggtggattccttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
1368630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 24840976 - 24840896
Alignment:
| Q |
311 |
ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
391 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||||| ||||||||||||| | || ||||| ||||||||||||||| |
|
|
| T |
24840976 |
ttctttaatgtatacttctattgtggcgacaaaactatcagcaacattcacgttaggtaactgacccttagttacattcat |
24840896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 23571851 - 23571563
Alignment:
| Q |
14 |
cttgcattttagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattctt |
113 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
23571851 |
cttgcattttagtaatagcttgaacatgtcgcgatgctccaacagcatgccttctaaccaagtgtccgcgaacaacagcttgcaatttcactacattctt |
23571752 |
T |
|
| Q |
114 |
actctttagaagtgctctccgaactaaatatcctctaattgaagcctggatga-tatcgcagcaaattctggaggattgacatccatcgtactctcaatt |
212 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||| | || |||||| |||| |||||||||||||||| | ||||||||||| |
|
|
| T |
23571751 |
actatttagaagtgctctccgaaccaaatatcctctaattgaagcctggattattaatgcagcagattccggaggattgacatccaccatactctcaatt |
23571652 |
T |
|
| Q |
213 |
tttgtgataattatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctc |
301 |
Q |
| |
|
| ||||||||| || ||||||| || |||||||||| ||||||||| | |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
23571651 |
tcggtgataattgttcctggcatatccgagcatgcattggaggataactgtagcttctcattagagaaatctgttgtacaaatcttctc |
23571563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 18179988 - 18180068
Alignment:
| Q |
311 |
ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
391 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
18179988 |
ttctttaatgtattcttccattgtagcaacaaaactgtcagcaacattcacgttcggtaactgacacttagttacattcat |
18180068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 312 - 384
Target Start/End: Original strand, 5646347 - 5646419
Alignment:
| Q |
312 |
tctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagtta |
384 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || ||||| |||||||| |
|
|
| T |
5646347 |
tctttcatgtattcttccattgtggcaacaaaactatcagcaacattcacgttaggtaactgacccttagtta |
5646419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 26375666 - 26375603
Alignment:
| Q |
328 |
ccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
391 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
26375666 |
ccattgtggcaataaaactatcagcaacattcactttcggtaactgacacttagttacattcat |
26375603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 7657992 - 7657873
Alignment:
| Q |
16 |
tgcattttagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttac |
115 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||| ||||||| ||||||||||||||||||| | |||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
7657992 |
tgcattttagcaatagcttgaacacatcgcaatgttccaacagcatgccttctaaccaagtgcccacgaacagcagcttgcaacttcactgcattcttac |
7657893 |
T |
|
| Q |
116 |
tctttagaagtgctctccga |
135 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7657892 |
tctttagaagtgctctccga |
7657873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 302
Target Start/End: Complemental strand, 7657775 - 7657611
Alignment:
| Q |
139 |
aaatatcctctaattgaagcctggatgat-atcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataattatttctggcatct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |||| || ||||||||||||| | || ||||| | | |||| |||| |||||||||||| |
|
|
| T |
7657775 |
aaatatcctctaattgaagcctggatgattatcacagcagattccggtggattgacatccaccttattctcagtctcggtgacaattgtttctggcatct |
7657676 |
T |
|
| Q |
238 |
ctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctca |
302 |
Q |
| |
|
| ||||| |||| ||||||||| ||||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
7657675 |
ccgagcagacatcggaggataactgcggcttttcattagagaaatctgttgtacaaatcttctca |
7657611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 28660058 - 28660106
Alignment:
| Q |
314 |
tttaatgtattcttccattgtggcaacaaaactatcaacaacattcacg |
362 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
28660058 |
tttaatgtattcttccaatgtggcaccaaaactatcagcaacgttcacg |
28660106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 52900523 - 52900489
Alignment:
| Q |
310 |
attctttaatgtattcttccattgtggcaacaaaa |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
52900523 |
attctttaatgtattcttccattgtggcaacaaaa |
52900489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University