View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_22 (Length: 401)
Name: NF11778_low_22
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 6682616 - 6682246
Alignment:
| Q |
17 |
aatcttaaacttgtaaatgtggataagttggagttttggtttgactgctttccttctttgnnnnnnntcataatatctcttggtaactcaactattttgc |
116 |
Q |
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| T |
6682616 |
aatcttaaacttgtaaatgtggataagttggagttttggtttgactgctttccttctttgaaaaaaatcatgatatctcttggtaactcaactattttgc |
6682517 |
T |
|
| Q |
117 |
ctgataagatatttgacctactatcacttaaa-cgtatagagatagttggatgccattatttgaagtcgttgccatgaggaatatctcgccttaataact |
215 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6682516 |
ctgataagatatttgacctactatcacttaaaacgtatagagatagttggatgccattatttgaagtcgttgccacgaggaatatctcgccttaataact |
6682417 |
T |
|
| Q |
216 |
tggtcgaactaaaaatatgggattgtccactcttagaacaatgcaactgcaagtgctttacaggagaagatttgctcagatttctcatgtcccggacaaa |
315 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6682416 |
tggtcgaactaaaaaaatgggattgtccactcttaggacaatgcaactgcaagtgctttacaggagaagatttgctcagatttctcatgtcccggacaaa |
6682317 |
T |
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| Q |
316 |
atagtgaatctgagagccaaagtggtaaaagtaccagcaccaaactgttaatttgtttgtttgattttgat |
386 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6682316 |
atagtgaggctgagagccaaagtggtaaaagtaccagcaccaaactgttaatttgtttgtttgattttgat |
6682246 |
T |
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