View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_23 (Length: 388)
Name: NF11778_low_23
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 9497074 - 9496725
Alignment:
| Q |
20 |
ttagtaacatcacctacaaaatatactctatacctatacctgtttacagaaagagtcaatctcatcatggagcattccgtgcatggaagataaagatgca |
119 |
Q |
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| T |
9497074 |
ttagtaacatcacccacaaaatatactctatacctatacctgtttacagaaagagtcaatctcatcatggagcattccgtgcatggaagataaagatgca |
9496975 |
T |
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| Q |
120 |
cttgttgcagaacagctccgtaactcgggagaa-gcaaaggtaaggtaacatccggctgtataattaaacacccacaatgaacaccaacatatatgtatc |
218 |
Q |
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| T |
9496974 |
cttgttgcagaacagctccgtaactcgggaggttgcagaggtaaggtaacatccggctgtataattaaacacccacaatgaacaccaacatatatgtatc |
9496875 |
T |
|
| Q |
219 |
tagtaggacttaagcaacaatctttcttacatgttcctggtcacgtgctatctgtgacattgcaatcaggcggtcctgcagcaaggcagcaggtaaaggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496874 |
tagtaggacttaagcaacaatctttcttacatgttcctggtcacgtgctatctgtgacattgcaatcaggcggtcctgcagcaaggcagcaggtaaaggt |
9496775 |
T |
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| Q |
319 |
tggatcagaggctgtactgcaatgtttttacctctccaagaaggccacac |
368 |
Q |
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| T |
9496774 |
tgaatcagaggctgtactgcaatgtttttacctctccaagaaggccacac |
9496725 |
T |
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