View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_24 (Length: 385)
Name: NF11778_low_24
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 9908353 - 9908543
Alignment:
| Q |
134 |
tggagaagataggccttatgattgaaaatcctcccattcctttcatttccaatgctaatggtgagctgactctcaaagaagtttactgtttcaaaaatca |
233 |
Q |
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| T |
9908353 |
tggagaagataggccttatgatggaaaatcctctcattcctttcatttccaatgctaatggtgagctgactctcaaagaagtttactgtttcaaaaatca |
9908452 |
T |
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| Q |
234 |
aaactctcagactctagattgggccaaagacatttggatta---aggacatccccacatctaaatctttcttagtttggaggataatgcat |
321 |
Q |
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| T |
9908453 |
atactctcagactctagattgggccaaagacatttggattaattaggacattcccacatctaagtctttcttagtttggaggataatgcat |
9908543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 9905652 - 9905789
Alignment:
| Q |
1 |
ttaaaacctttttacaacatcatgccagttgccttcctttttacaagattggcacatcttgcaactcattctcccatgggccatcaattgaagctactaa |
100 |
Q |
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| T |
9905652 |
ttaaaacctttttacaacatcatgtcagttgcctacctttttacaagattggcacatcttgcaactcattctcccatgagccatcaattgaagctactaa |
9905751 |
T |
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| Q |
101 |
agtttttgggttttaacctttttggttaaggattggag |
138 |
Q |
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| T |
9905752 |
agtttttggattttaacctttttggttaaggattggag |
9905789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 16253505 - 16253458
Alignment:
| Q |
126 |
ttaaggattggagaagataggccttatgattgaaaatcctcccattcc |
173 |
Q |
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| T |
16253505 |
ttaaggaatggagaaggtcagccttatgattgaaaatcctcccattcc |
16253458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 19313700 - 19313750
Alignment:
| Q |
318 |
gcatccattcagtttgtgatctttgtttgaaaagtgaagaaacttcttttc |
368 |
Q |
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| T |
19313700 |
gcatcccttctgtttgtgatctttgtttgaatagtgaggaaaattcttttc |
19313750 |
T |
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