View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_25 (Length: 383)
Name: NF11778_low_25
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 17273708 - 17273435
Alignment:
| Q |
10 |
atgagaagcacaccaaaacaaaacattatggaatattacttggtatttgtagcaaagaaaccaaataaaatactttgttattattttgtttttctattat |
109 |
Q |
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| T |
17273708 |
atgagaagcacaccaaaacaaaacattatggaatattacttggtatttgtagcaaagaaaccaaataaaatactttgttattattttgtttttctattat |
17273609 |
T |
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| Q |
110 |
aaaaagagaataannnnnnnnacgtacttgtactagagggaaaaagtaatctgatcattgtaccttgtgctaagaaagaaatagctaaatgtcaaattca |
209 |
Q |
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| T |
17273608 |
aaaaagagaataattttttttacgtacttgtactagagggaaaaagtaatctgatcattgtaccttgtgctaagaaagaaatagctaaatgtcaaattca |
17273509 |
T |
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| Q |
210 |
aagatacgattgaaccatatcgtagattatatttggccgtctttttgaaacgtcatgaagtatttctatgaagc |
283 |
Q |
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| T |
17273508 |
aagatacgattgaaccatatcgtagattatatttggccgtctttttgaaacgtcatgaagtatttctatgaagc |
17273435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 366
Target Start/End: Complemental strand, 17273390 - 17273352
Alignment:
| Q |
328 |
gaagtatttggccattgttttctaggactctgtttgtgt |
366 |
Q |
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| T |
17273390 |
gaagtatttggccattgttttctaggactctgtttgtgt |
17273352 |
T |
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