View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_26 (Length: 378)
Name: NF11778_low_26
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 46694388 - 46694743
Alignment:
| Q |
1 |
atataaaatgtcaataatttaagcccaatactgtattatctaacacaaaacacaagattttttcagcaaaataaaaatggtcaaagcacaagatggccca |
100 |
Q |
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| T |
46694388 |
atataaagtgtcaataatttaagcccaatact-tattatctaacacaaaacacaagattttttcaacaaaataaaaatggtcaaagcacaagatggccca |
46694486 |
T |
|
| Q |
101 |
ctttgtgtgaacgatttgttttgcgagaaaagaaaataaaaataaaccaagcatctgtccttcctatcttgtattgtatttatcattgaaccaaatatat |
200 |
Q |
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| T |
46694487 |
ctttgtgtgaacgatttgttttacgagaaaa-aaattaaaaataaaccaagcatttgtccttcctatcttgt-----atttatcattgagccaaatatat |
46694580 |
T |
|
| Q |
201 |
tggtttttatcactttttatacaactaatttccactttaaaattaacataccaactcatacgaaataaagaagnnnnnnntgatacagatcatatttaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
46694581 |
tggtttttatcactttttatacaactaatttccactttaaaattaacataccaactcatacgaaataaagaagaaaaaaatgatacggatcatatttaaa |
46694680 |
T |
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| Q |
301 |
ttattcaaaaatagttaatatcaacattagcattcatataaatgaataagaatataagggaag |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46694681 |
ttattcaaaaatagttaatatcaacattagcattcatataaatgaataagaatataagggaag |
46694743 |
T |
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