View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_low_30 (Length: 346)
Name: NF11778_low_30
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 1769310 - 1769032
Alignment:
| Q |
1 |
gtaatagagatgctaaacatattttttaaaataaaaagccctaagggaggcattatttaagtaaccc-----tagaaatttatcttgaaaatagaggtca |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1769310 |
gtaatagagatgctaaacatattttttaaaataaaaagccctaaggg-ggcattgtttaagtaacccataaatagaaatttatcttgaaaatagaggtca |
1769212 |
T |
|
| Q |
96 |
agcatatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaagaaagaagactagtttcatatgtagtatataaat |
195 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1769211 |
aacatatcaaaatcataacttcacaattttcaatgtaaaagttattagttttagatgcttaaacaagaaagaagactagtttcatatgtagtatataaat |
1769112 |
T |
|
| Q |
196 |
ttgtagttttcatagacaagaaagactatcattgattttgaagatgttcaaacaggaaaagcactttgtgttgattcatg |
275 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1769111 |
ttgcagttttcatagacaagaaagactatcattgattttgaagatgttcaaacaggaaaagcactttgtgttgattcatg |
1769032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 35558883 - 35558962
Alignment:
| Q |
74 |
tttatcttgaaaatagaggtcaagcatatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaa |
158 |
Q |
| |
|
||||||||||||||| | ||||| ||||| |||||||| || |||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
35558883 |
tttatcttgaaaatacaagtcaaacatataaaaatcatgac-----aatttttaacgtaaaagttattaattttagatgcttaaa |
35558962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 8633832 - 8633778
Alignment:
| Q |
108 |
tcataacttcacaattttcaaggtaaaagtta-ttagttttagatgcttaaacaa |
161 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| | | |||||||||||||||||| |
|
|
| T |
8633832 |
tcataactacacaattttcaaggtaaaacttactaaattttagatgcttaaacaa |
8633778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 38902233 - 38902172
Alignment:
| Q |
99 |
atatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaa |
161 |
Q |
| |
|
|||| ||| |||||| | |||||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
38902233 |
atataaaagtcataattacacaattttcaatgtaaaagt-attatttttagatgcttaaacaa |
38902172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 4552219 - 4552271
Alignment:
| Q |
109 |
cataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaa |
161 |
Q |
| |
|
||||||| |||||||||||| |||| | ||| || |||||||||||||||||| |
|
|
| T |
4552219 |
cataactacacaattttcaacgtaataattactatttttagatgcttaaacaa |
4552271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 15064578 - 15064654
Alignment:
| Q |
80 |
ttgaaaatagaggtcaagcatatc-aaaatcataacttcacaattttcaaggtaaaagttattagttttagatgctt |
155 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||| | |||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
15064578 |
ttgaaaatacaagtcaaacatatgtaaaatcataaatacacaattttcaatataaaagttactacttttagatgctt |
15064654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University