View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_32 (Length: 341)
Name: NF11778_low_32
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 33859942 - 33859630
Alignment:
| Q |
16 |
ctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgat |
115 |
Q |
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| T |
33859942 |
ctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgat |
33859843 |
T |
|
| Q |
116 |
gaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgtcta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33859842 |
gaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgtcta |
33859743 |
T |
|
| Q |
216 |
gatcattgatgagctggtcagtcgtgttaagtgaaccaggttggtaatcggcatattcatttgaaccatcacgctcagcctaaagaacacgcgaagcaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33859742 |
gatcattgatgagctggtcagtcgtgttaagtgaaccaggttggtaatcggcatattcatttgaaccatcacgctcagcctaaagaacacgcgaagcaaa |
33859643 |
T |
|
| Q |
316 |
gtaagccttcttc |
328 |
Q |
| |
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||||||||||||| |
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| T |
33859642 |
gtaagccttcttc |
33859630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 33870293 - 33869982
Alignment:
| Q |
16 |
ctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgat |
115 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
33870293 |
ctttcagtttaaaagaatatgtaaaactcaattcaaatttctatggcctaaaatgattgcaagcaagc-gaaccttgctatcatatatggaactgttgat |
33870195 |
T |
|
| Q |
116 |
gaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgtcta |
215 |
Q |
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| T |
33870194 |
gaaatttgttgaacttgagctgtgaattgatcccactgtgagatgtatcgatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgtcta |
33870095 |
T |
|
| Q |
216 |
gatcattgatgagctggtcagtcgtgttaagtgaaccaggttggtaatcggcatattcatttgaaccatcacgctcagcctaaagaacacgcgaagcaaa |
315 |
Q |
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||| |||||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33870094 |
aatccttgatgagctggtcggtggtgttaagtgaaccaggttgataattagcatattcatttgaaccatcacgctcagcctaaagaacacgcaaagcaaa |
33869995 |
T |
|
| Q |
316 |
gtaagccttcttc |
328 |
Q |
| |
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||||||||||||| |
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| T |
33869994 |
gtaagccttcttc |
33869982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 33875050 - 33874813
Alignment:
| Q |
25 |
taaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgatgaaatttgt |
124 |
Q |
| |
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||||| ||| |||||| ||||||| |||||| |||| ||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
33875050 |
taaaagaatttgtaaagctcaattaaaatgtgaatggcataaaatgattgcaagctaaca-aaccttgctatcatatatggaacagttgatgaaatttgt |
33874952 |
T |
|
| Q |
125 |
tgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgtctagatcattga |
224 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| || |||| | ||| |||| |
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| T |
33874951 |
tgcacctgagctgtgaattgatcccactgtgagatgtatccatttgcatatggaagatctcctatgtggaaaacaatgtcgaaactgtccaaatccttga |
33874852 |
T |
|
| Q |
225 |
tgagctggtcagtcgtgttaagtgaaccaggttggtaat |
263 |
Q |
| |
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|||| ||||| || |||||||||||||||||||| |||| |
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| T |
33874851 |
tgagttggtcggtggtgttaagtgaaccaggttgataat |
33874813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 86 - 296
Target Start/End: Complemental strand, 42783950 - 42783740
Alignment:
| Q |
86 |
aaccttgctatcatatatggaacttttgatgaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctc |
185 |
Q |
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||||| || ||||||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
42783950 |
aacctggcaatcatatatggtactgttgatgcaattggttccacttgagctgtgaattggtcccactgtgagatgtatccgtttgcatatgttatatctc |
42783851 |
T |
|
| Q |
186 |
ctatgtggaaaacaatgtcaaagttgtctagatcattgatgagctggtcagtcgtgttaagtgaaccaggttggtaatcggcatattcatttgaaccatc |
285 |
Q |
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| T |
42783850 |
ctatgtggaaaacaacgtctatattttttaaatcctcgataagccggtcagtggtgttaagtgacccaggttggtagttgctatactcatttgaaccatc |
42783751 |
T |
|
| Q |
286 |
acgctcagcct |
296 |
Q |
| |
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|||||| |||| |
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|
| T |
42783750 |
acgctcggcct |
42783740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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