View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_low_33 (Length: 335)

Name: NF11778_low_33
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_low_33
NF11778_low_33
[»] chr3 (5 HSPs)
chr3 (1-321)||(38029564-38029884)
chr3 (228-318)||(38040776-38040866)
chr3 (47-224)||(38041065-38041237)
chr3 (2-47)||(50907580-50907625)
chr3 (79-132)||(50907668-50907720)
[»] chr8 (1 HSPs)
chr8 (1-321)||(21605555-21605875)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 38029884 - 38029564
Alignment:
Q  1 ctccaactaacttggtatttgttaaatcttcttcataattgatgaggtagtatcagtttatgtattgggataagtcctttcagaggtttgttcttaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38029884 ctccaactaacttggtatttgttaaatcttcttcataattgatgaggtagtatcagtttatgtattgggataagtcctttcagaggttttttcttaccaa 38029785  T
Q  101 aaagcttgagctttgtagcatttaattctgataagtgaacagactttcaatcttgattaccttagtataatttttatgcgttttgcacataaaataatca 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  38029784 aaagcttgagctttgtagcatttaattctgataagtgaacggactttcaatcttgattaccttagtataaattttatgcgttttgcacagaaaataatca 38029685  T
Q  201 taattcataaggtatttggtaggaccaagttttgatatcagaaatttttagcctttgtaaattgtaacgaccaagtttcttaacgtgggtcatatattta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38029684 taattcataaggtatttggtaggaccaagttttgatatcagaaatttttagcctttgtaaattgtaacgaccaagtttcttaacgtgggacatatattta 38029585  T
Q  301 attattgtctcaagtcttaag 321  Q
    |||||||||||||||||||||    
T  38029584 attattgtctcaagtcttaag 38029564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 38040866 - 38040776
Alignment:
Q  228 agttttgatatcagaaatttttagcctttgtaaattgtaacgaccaagtttcttaacgtgggtcatatatttaattattgtctcaagtctt 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||||    
T  38040866 agttttgttatcagaaatttttagcctttgtaaattgtaacgaccagctttcttaatgtgggacatatatttaattattgtctcaagtctt 38040776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 38041237 - 38041065
Alignment:
Q  47 gtagtatcagtttatgtattgggataagtcctttcagaggtttgttcttaccaaaaagcttgagctttgtagcatttaattctgataagtgaacagactt 146  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||| |||||| ||||| ||||| |||||| ||||||||||||||||||    ||||     
T  38041237 gtagtatcagtttttgtattgggataagtcgcttcagaggtttgttgttaccataaagcgtgagc-ttgtagtatttaattctgataagtg----gactc 38041143  T
Q  147 tcaatcttgattaccttagta-taatttttatgcgttttgcacataaaataatcataattcataaggtatttggtagga 224  Q
     ||| |  |||| || |||||  || |||||| ||||||||||| ||||  ||||||||||||||||||||||||||||    
T  38041142 acaa-ccagatttccgtagtacaaagttttatacgttttgcacaaaaaacgatcataattcataaggtatttggtagga 38041065  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 50907580 - 50907625
Alignment:
Q  2 tccaactaacttggtatttgttaaatcttcttcataattgatgagg 47  Q
    ||||| |||||||||  ||||||||||||||||| |||||||||||    
T  50907580 tccaattaacttggttgttgttaaatcttcttcaaaattgatgagg 50907625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 50907668 - 50907720
Alignment:
Q  79 ttcagaggtttgttcttaccaaaaagcttgagctttgtagcatttaattctgat 132  Q
    ||||||| |||||| |||||||||| |||||||||  |||||||||||||||||    
T  50907668 ttcagagatttgttgttaccaaaaaacttgagctta-tagcatttaattctgat 50907720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 21605875 - 21605555
Alignment:
Q  1 ctccaactaacttggtatttgttaaatcttcttcataattgatgaggtagtatcagtttatgtattgggataagtcctttcagaggtttgttcttaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21605875 ctccaactaacttggtatttgttaaatcttcttcataattgatgaggtagtatcagtttctgtattgggataagtcctttcagaggtttgttcttaccaa 21605776  T
Q  101 aaagcttgagctttgtagcatttaattctgataagtgaacagactttcaatcttgattaccttagtataatttttatgcgttttgcacataaaataatca 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  21605775 aaagcttgagctttgtagcatttaattctgataagtgaacggactttcaatcttgaataccttagtataaattttatgcgttttgcacagaaaataatca 21605676  T
Q  201 taattcataaggtatttggtaggaccaagttttgatatcagaaatttttagcctttgtaaattgtaacgaccaagtttcttaacgtgggtcatatattta 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21605675 taattcataaggtatttggtaggaccaagttttgatatcaaaaatttttagcctttgtaaattgtaacgaccaagtttcttaacgtgggacatatattta 21605576  T
Q  301 attattgtctcaagtcttaag 321  Q
    |||||||||||||||||||||    
T  21605575 attattgtctcaagtcttaag 21605555  T

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