View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_35 (Length: 315)
Name: NF11778_low_35
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 43818086 - 43818402
Alignment:
| Q |
1 |
ctaatgttctctaattcctttgttctatactttagcatcatgcttagcttcatcgtgttattactgtgaagtattttaattcttaggagaggtagttttt |
100 |
Q |
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| T |
43818086 |
ctaatgttctctaattcctttgttctatactttagcaccatgcttagcatcatcgtgttattactgtgaagtattttaattcttaggagaggtagttttt |
43818185 |
T |
|
| Q |
101 |
ggtgtcccgccaatatgcggcacctgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaattcggcgtggataatatta |
200 |
Q |
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| T |
43818186 |
ggtgtcccgccaatatgtggcacctgttatttgtttcgcttttttcgtatttatctgcgaccggtacggctttttgtagaattcggcgtggataatatta |
43818285 |
T |
|
| Q |
201 |
gctgatt-----nnnnnnnnnnggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccattgtcgcgttggtatgcct |
295 |
Q |
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| T |
43818286 |
gctgattaaaaaaaaaaaaaaaggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccattgtcgcgttggtatgcct |
43818385 |
T |
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| Q |
296 |
tggaacatgttgctatt |
312 |
Q |
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||||||||||||||||| |
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| T |
43818386 |
tggaacatgttgctatt |
43818402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 19873395 - 19873568
Alignment:
| Q |
26 |
tatactttagcatcatgcttagcttcatcgtgttattactgtgaagtattttaattcttaggagaggtag-tttttggtgtcccgccaatatgcggcacc |
124 |
Q |
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||||||||||||||||||||||| | | | ||| |||||||||||||||||||| ||| || |||| | ||||||||| ||||| |||||||| ||| |
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| T |
19873395 |
tatactttagcatcatgcttagcctatttgggtttttactgtgaagtattttaatccttgagaaaggtggttttttggtgctccgcctatatgcggtacc |
19873494 |
T |
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| Q |
125 |
tgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaattcggcgtggataatat |
198 |
Q |
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| T |
19873495 |
ttttgtatgttccgctttattcgtttttatccgcgagcggtaccgcttcttgtacaactcgtcgtgaataatat |
19873568 |
T |
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