View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_36 (Length: 309)
Name: NF11778_low_36
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 5157464 - 5157184
Alignment:
| Q |
18 |
aagtactactacgtaagtaggtcccttaacttccttgctttgaaccatctcaaacggttttcacgagtttaaatagttaagttaggcttggattcatcaa |
117 |
Q |
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| T |
5157464 |
aagtactactacgtaagtaggtcccttaacttccttgctttgaaccatctcaaacggttttcacgagtttaaatagttaagttaggcttggattcatcaa |
5157365 |
T |
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| Q |
118 |
ggccaaggattttataactacttcaggttgttgctttcaagggccttcaaaatcgtgttcgctccggacaaaggaaacatgggaagtcgacaatctttga |
217 |
Q |
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| T |
5157364 |
ggccaaggattttataactacttcaggttgttgctttcaagggccttcaaaatcgtgttcgctccggacaaaggaaacatgggaagtcgacaatctttga |
5157265 |
T |
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| Q |
218 |
ttgttgatataatacataagaaacttttagttaaatgttttccttgtgaatgtgatgttctcagggctcttatctgcctttg |
299 |
Q |
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| T |
5157264 |
ttgaagatataatacataagaaac-tttagttaaatgttttccttgtgaatgtgatgttctcagggctcttatctgcttttg |
5157184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 16026683 - 16026629
Alignment:
| Q |
166 |
aaaatcgtgttcgctccggacaaaggaaacatgggaagtcgacaatctttgattg |
220 |
Q |
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| T |
16026683 |
aaaattgtgttccctccagacaaaggaaacatgagaagtctagaatctttgattg |
16026629 |
T |
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