View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_low_39 (Length: 295)

Name: NF11778_low_39
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_low_39
NF11778_low_39
[»] chr8 (1 HSPs)
chr8 (17-295)||(44960723-44961001)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 44961001 - 44960723
Alignment:
Q  17 gaacatttagccatcagtttcacttatttgcagcatgagaactgttgaacattaagattctgataacttaaaaaagtgtaactttccattgcctaacatt 116  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44961001 gaacatgtagccatcagtttcacttatttgtagcatgagaactgttgaacattaagattctgataacttaaaaaagtgtaactttccattgcctaacatg 44960902  T
Q  117 tctgccatctttttcaatttcaagtttaagctttttgtgtatggtttgatatttttaacatgagaaggattttcgtattaactccttaagtgccgcataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  44960901 tctgccatctttttcaatttcaagtttaagctttttgtgtatggtttgatatttttaacatgagatggattttcgtaataactccttaagtgccgcataa 44960802  T
Q  217 tcgacatctataatttaggaactcaacagtggaatagcgataatatagatagtttactgtgaaataaaggaaatgcaac 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44960801 tcgacatctataatttaggaactcaacagtggaatagcgataatatagatagtttactgtgaaataaaggaaatgcaac 44960723  T

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