View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_low_41 (Length: 292)

Name: NF11778_low_41
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_low_41
NF11778_low_41
[»] chr8 (23 HSPs)
chr8 (15-270)||(44960306-44960549)
chr8 (154-277)||(24733140-24733265)
chr8 (177-270)||(35209952-35210045)
chr8 (145-270)||(39691134-39691261)
chr8 (156-266)||(167868-167978)
chr8 (154-270)||(27734360-27734478)
chr8 (153-266)||(28207591-28207706)
chr8 (154-263)||(9200006-9200116)
chr8 (196-277)||(16459255-16459336)
chr8 (152-266)||(42636390-42636506)
chr8 (180-238)||(8674455-8674513)
chr8 (196-270)||(29217560-29217634)
chr8 (154-201)||(37426387-37426436)
chr8 (153-243)||(7574226-7574318)
chr8 (151-263)||(44253773-44253886)
chr8 (217-269)||(17822994-17823046)
chr8 (154-255)||(27801261-27801364)
chr8 (156-263)||(42760174-42760282)
chr8 (153-192)||(11993803-11993842)
chr8 (237-270)||(9629839-9629872)
chr8 (193-246)||(10893475-10893528)
chr8 (177-270)||(15353790-15353883)
chr8 (156-277)||(41385235-41385358)
[»] chr7 (19 HSPs)
chr7 (158-270)||(46726109-46726222)
chr7 (159-270)||(2347390-2347503)
chr7 (179-275)||(36939466-36939562)
chr7 (186-270)||(47639186-47639270)
chr7 (179-270)||(2959594-2959685)
chr7 (177-269)||(33887874-33887965)
chr7 (151-192)||(21512990-21513031)
chr7 (154-248)||(27123242-27123338)
chr7 (155-270)||(35599822-35599939)
chr7 (216-268)||(15995921-15995973)
chr7 (216-270)||(4133810-4133864)
chr7 (145-270)||(27337658-27337783)
chr7 (208-266)||(33123791-33123849)
chr7 (186-275)||(36189481-36189571)
chr7 (186-255)||(22618732-22618801)
chr7 (151-270)||(8920723-8920843)
chr7 (156-269)||(10031942-10032057)
chr7 (216-268)||(14574765-14574817)
chr7 (217-277)||(20397482-20397542)
[»] chr5 (21 HSPs)
chr5 (153-270)||(41583510-41583629)
chr5 (236-275)||(3124715-3124754)
chr5 (155-266)||(30501164-30501277)
chr5 (155-266)||(30541507-30541620)
chr5 (194-275)||(2827579-2827660)
chr5 (216-265)||(8761959-8762008)
chr5 (194-270)||(12198206-12198281)
chr5 (153-248)||(18229644-18229740)
chr5 (154-270)||(31672379-31672498)
chr5 (153-255)||(7210897-7211000)
chr5 (152-212)||(7719170-7719232)
chr5 (216-255)||(27536735-27536774)
chr5 (151-192)||(2112510-2112552)
chr5 (216-270)||(31558046-31558100)
chr5 (216-269)||(12448703-12448756)
chr5 (154-198)||(141842-141886)
chr5 (200-255)||(24232388-24232444)
chr5 (191-243)||(24232487-24232538)
chr5 (151-192)||(25437973-25438016)
chr5 (202-270)||(26407532-26407600)
chr5 (153-198)||(29342303-29342350)
[»] chr3 (26 HSPs)
chr3 (153-277)||(45529132-45529258)
chr3 (153-277)||(48811381-48811507)
chr3 (157-270)||(38723212-38723326)
chr3 (180-277)||(25753481-25753578)
chr3 (191-277)||(34591102-34591188)
chr3 (180-253)||(46110890-46110963)
chr3 (153-277)||(40425082-40425208)
chr3 (156-276)||(4305156-4305278)
chr3 (179-267)||(26900046-26900136)
chr3 (196-270)||(28874504-28874578)
chr3 (217-270)||(38156524-38156577)
chr3 (156-254)||(48180207-48180307)
chr3 (186-255)||(48602245-48602314)
chr3 (230-277)||(30082449-30082496)
chr3 (216-263)||(37745013-37745060)
chr3 (216-270)||(25548218-25548272)
chr3 (152-182)||(27968166-27968196)
chr3 (241-275)||(35763676-35763710)
chr3 (217-263)||(45566109-45566155)
chr3 (216-270)||(51039787-51039841)
chr3 (216-270)||(55110059-55110113)
chr3 (225-270)||(19898122-19898167)
chr3 (197-270)||(32071127-32071200)
chr3 (199-272)||(53038294-53038367)
chr3 (216-265)||(53433211-53433260)
chr3 (218-270)||(31419241-31419293)
[»] chr2 (33 HSPs)
chr2 (186-277)||(22440156-22440247)
chr2 (153-277)||(24762727-24762853)
chr2 (153-277)||(24765302-24765428)
chr2 (190-262)||(34233950-34234022)
chr2 (191-277)||(24791996-24792083)
chr2 (196-276)||(35022619-35022699)
chr2 (156-255)||(20128300-20128401)
chr2 (177-270)||(15690191-15690284)
chr2 (195-276)||(35443506-35443587)
chr2 (196-277)||(45522702-45522783)
chr2 (153-265)||(5961988-5962104)
chr2 (191-249)||(37978501-37978559)
chr2 (217-262)||(4616871-4616916)
chr2 (154-270)||(13538363-13538482)
chr2 (186-277)||(814998-815089)
chr2 (196-255)||(39445466-39445525)
chr2 (216-270)||(6761746-6761800)
chr2 (216-269)||(8964424-8964477)
chr2 (159-270)||(14295602-14295714)
chr2 (156-255)||(20555489-20555589)
chr2 (153-203)||(38533432-38533483)
chr2 (216-263)||(45255473-45255520)
chr2 (153-248)||(1334926-1335023)
chr2 (195-253)||(3206543-3206601)
chr2 (176-254)||(13081931-13082009)
chr2 (151-270)||(20064876-20064997)
chr2 (153-202)||(38533956-38534006)
chr2 (225-275)||(41073129-41073179)
chr2 (216-270)||(42966989-42967043)
chr2 (217-270)||(13197283-13197336)
chr2 (208-269)||(18227146-18227207)
chr2 (194-255)||(20211510-20211571)
chr2 (225-269)||(25622574-25622618)
[»] chr6 (10 HSPs)
chr6 (153-278)||(15588622-15588749)
chr6 (155-267)||(3766249-3766360)
chr6 (153-277)||(4806516-4806643)
chr6 (225-270)||(30396288-30396333)
chr6 (153-271)||(35229259-35229379)
chr6 (196-277)||(6555051-6555132)
chr6 (216-265)||(7465509-7465558)
chr6 (216-261)||(10346023-10346068)
chr6 (216-265)||(27843231-27843280)
chr6 (156-255)||(25028733-25028833)
[»] chr4 (35 HSPs)
chr4 (151-277)||(41370181-41370309)
chr4 (155-255)||(13800731-13800831)
chr4 (175-267)||(11260548-11260640)
chr4 (191-275)||(48315931-48316015)
chr4 (191-277)||(32692965-32693052)
chr4 (186-277)||(47461055-47461146)
chr4 (175-275)||(12618709-12618809)
chr4 (155-266)||(134814-134924)
chr4 (216-270)||(14949007-14949061)
chr4 (159-244)||(36112510-36112594)
chr4 (154-255)||(31072505-31072608)
chr4 (196-275)||(16555979-16556058)
chr4 (157-270)||(41956450-41956565)
chr4 (196-270)||(5799006-5799080)
chr4 (195-265)||(24981803-24981873)
chr4 (145-203)||(43956098-43956156)
chr4 (178-248)||(47740998-47741068)
chr4 (196-268)||(10099374-10099447)
chr4 (156-209)||(14949347-14949400)
chr4 (216-277)||(36721599-36721660)
chr4 (179-252)||(53391272-53391345)
chr4 (153-202)||(8297838-8297889)
chr4 (195-275)||(30624707-30624787)
chr4 (216-276)||(34235945-34236005)
chr4 (151-200)||(49532340-49532391)
chr4 (202-273)||(14603760-14603831)
chr4 (155-269)||(50086429-50086544)
chr4 (156-202)||(37060522-37060568)
chr4 (154-270)||(2063444-2063561)
chr4 (177-266)||(7852568-7852657)
chr4 (217-266)||(47995761-47995810)
chr4 (216-277)||(54495513-54495574)
chr4 (196-248)||(29256823-29256875)
chr4 (153-266)||(35777723-35777838)
chr4 (154-267)||(45900172-45900287)
[»] chr1 (26 HSPs)
chr1 (154-277)||(39150550-39150676)
chr1 (155-270)||(43024933-43025050)
chr1 (153-245)||(45775824-45775918)
chr1 (191-270)||(27004043-27004122)
chr1 (153-270)||(46087065-46087182)
chr1 (180-253)||(27542856-27542929)
chr1 (191-270)||(9534379-9534458)
chr1 (154-246)||(39914649-39914743)
chr1 (223-277)||(2484927-2484981)
chr1 (142-257)||(48022386-48022503)
chr1 (216-265)||(3338051-3338100)
chr1 (196-277)||(26756199-26756280)
chr1 (179-267)||(6983013-6983101)
chr1 (179-270)||(1048690-1048780)
chr1 (203-270)||(5423766-5423833)
chr1 (195-270)||(26604952-26605027)
chr1 (216-263)||(28171509-28171556)
chr1 (216-270)||(45359267-45359321)
chr1 (216-270)||(45753482-45753536)
chr1 (157-266)||(47187845-47187955)
chr1 (197-270)||(15458434-15458507)
chr1 (208-269)||(17112730-17112791)
chr1 (153-266)||(2864110-2864224)
chr1 (217-269)||(33744156-33744208)
chr1 (217-265)||(38570379-38570427)
chr1 (187-255)||(45640550-45640618)
[»] scaffold0005 (1 HSPs)
scaffold0005 (202-273)||(213547-213618)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 44960306 - 44960549
Alignment:
Q  15 gaaagaaccccttgtaatccaaagtttgacaaaaatcaaactcaccctcctaaataatttgtattcgagttcattaaccaccttagccaaaatgtgattt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44960306 gaaagaaccccttgtaatccaaagtttgacaaaaatcaaactcatcctcctaaataatttgtattcgagttcattaacaaccttagccaaaatgtgattt 44960405  T
Q  115 atatgtttatatacaaactgaaattagtttttatagttagggtcttgttaacgagtgccccggacactctataagcatcccaaatttaaaaaatattcct 214  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||        
T  44960406 atatgtttatatacaaactgaaattagtttttatagttaggatcctgttaacgattgccccggacactctataagcattccaaatttaaaaaatat---- 44960501  T
Q  215 caaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44960502 --------ttaaatattacaaatttcaatgcattgattacataaattttcataaaa 44960549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 24733140 - 24733265
Alignment:
Q  154 gggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgat 251  Q
    |||| ||||||||||||| |||  ||| ||||| |||| ||||||||||||||||||||||   |||||||| |||| ||||||||| || |||||||||    
T  24733140 gggtgttgttaacgagtgtccccgggatactctttaaggatcccaaatttaaaaaatattctctaaaaaagtcaaatgttacaaattacagtgcattgat 24733239  T
Q  252 tacataaattttcataaaatcttact 277  Q
    |||| ||||||| |||||| ||||||    
T  24733240 tacacaaatttttataaaaacttact 24733265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 35210045 - 35209952
Alignment:
Q  177 gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||| |||| ||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| || ||| ||||||| ||||||    
T  35210045 gacactctttaaggatctcaaatttaaaaaatattccttaaaaaagttaaatgttacaaattccaatgtattaatcacacaaattttaataaaa 35209952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 39691261 - 39691134
Alignment:
Q  145 ttatagttagggtcttgttaacgagtgccc-cg-gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaa 242  Q
    ||||| || |||| |||||||||||||||| || |||||||| ||||||| ||| ||| ||||| ||||| | |||||||| ||||| | ||| ||||||    
T  39691261 ttatattttgggttttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaa 39691162  T
Q  243 tgcattgattacataaattttcataaaa 270  Q
    |||||||| |||| ||||||||||||||    
T  39691161 tgcattgaatacacaaattttcataaaa 39691134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 167978 - 167868
Alignment:
Q  156 gtcttgttaacgagtgccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    ||||||||| |||||||||| |||||||| |||| ||| |||||||||||| ||||| |  ||||||| || ||||| || || ||||||||| ||||||    
T  167978 gtcttgttagcgagtgcccccgacactctttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataatttccaatgcatttattaca 167879  T
Q  256 taaattttcat 266  Q
    ||| |||||||    
T  167878 taacttttcat 167868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 27734478 - 27734360
Alignment:
Q  154 gggtcttgttaacgagtgcccc-gga-cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgat 251  Q
    |||| ||| ||||||||||||| ||| |||||| |||| |||||||||||| ||| |||||||  |||||||  ||||||||||||| |||||||||||     
T  27734478 gggttttgctaacgagtgcccccggatcactctttaaggatcccaaatttagaaattattccttcaaaaagtctaatattacaaattccaatgcattgaa 27734379  T
Q  252 tacataaattttcataaaa 270  Q
    ||||   ||||||||||||    
T  27734378 tacacggattttcataaaa 27734360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 28207591 - 28207706
Alignment:
Q  153 agggtcttgttaacgagtgccccgga--cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    ||||||||||||||||||||||| ||  |||||| |||||||||||||||||| ||  |||| |  ||||||| || |||||||| || ||||||||| |    
T  28207591 agggtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattca 28207690  T
Q  251 ttacataaattttcat 266  Q
     |||| || |||||||    
T  28207691 atacacaacttttcat 28207706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 9200006 - 9200116
Alignment:
Q  154 gggtcttgttaacgagtgccccg-gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatt 252  Q
    ||||||||||||||||| ||||  |  ||||| |||| ||||||||||||||||||||| ||||||||| | |||| |||||||||  |||||| | |||    
T  9200006 gggtcttgttaacgagtacccccaggtactctttaaggatcccaaatttaaaaaatatttctcaaaaaaatcaaatgttacaaattcaaatgcactaatt 9200105  T
Q  253 acataaatttt 263  Q
    | | |||||||    
T  9200106 atacaaatttt 9200116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 16459255 - 16459336
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||||||||||||| | |||||||| |||| |||||||||||||||||    ||||| || ||||||||||| ||||||    
T  16459255 aaatttaaaaaatattcttaaaaaaagtcaaatgttacaaatttcaatgcacgagttacacaatttttcataaaaacttact 16459336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 42636506 - 42636390
Alignment:
Q  152 tagggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattg 249  Q
    |||||||||||||| |||||| ||  || |||||| |||||||||||||||||  || ||||  |||||||||| || |||||||| || |||||||||     
T  42636506 tagggtcttgttaaggagtgctcccggggcactctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcattt 42636407  T
Q  250 attacataaattttcat 266  Q
    | |||| || |||||||    
T  42636406 aatacacaacttttcat 42636390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 8674455 - 8674513
Alignment:
Q  180 actctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatt 238  Q
    ||||| |||| |||||||||||||||||||||  | ||||||||||||| |||||||||    
T  8674455 actctttaaggatcccaaatttaaaaaatattttttaaaaaagttaaatgttacaaatt 8674513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 29217560 - 29217634
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||| |||||||| || ||||| || |||||||||||||| ||||||| |||||||| | |||||| |||||    
T  29217560 aaatttagaaaatatttcttaaaaaggtcaaatattacaaattccaatgcagtgattacacagattttcgtaaaa 29217634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 37426387 - 37426436
Alignment:
Q  154 gggtcttgttaacgagtgcccc--ggacactctataagcatcccaaattt 201  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  37426387 gggtcttgttaacgagtgcccctgggacactctttaagcatcccaaattt 37426436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 7574318 - 7574226
Alignment:
Q  153 agggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaat 243  Q
    |||||||||||||||||||| ||  || |||| | |||| | |||||||||| |||||||| || |||||| | |||| ||||||||||||||    
T  7574318 agggtcttgttaacgagtgctcccggggcactatttaaggaacccaaatttagaaaatatttcttaaaaaaatcaaatgttacaaatttcaat 7574226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 44253773 - 44253886
Alignment:
Q  151 ttagggtcttgttaacga-gtgccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattg 249  Q
    |||||||||||||||||| ||  || | | ||||| |||| || ||||||||||||||||||  | |||||||| |||| ||| |||||| ||  |||||    
T  44253773 ttagggtcttgttaacgatgttaccagaaaactctttaaggattccaaatttaaaaaatatttttaaaaaaagtcaaatgttataaattttaaatcattg 44253872  T
Q  250 attacataaatttt 263  Q
    |||||| |||||||    
T  44253873 attacacaaatttt 44253886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 17823046 - 17822994
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaa 269  Q
    ||||||||||||||| ||||||| | || |||||||||||||||||| |||||    
T  17823046 aaaaagttaaatatttcaaattttagtgtattgattacataaatttttataaa 17822994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 27801364 - 27801261
Alignment:
Q  154 gggtcttgttaacgagtgccccg--gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgat 251  Q
    ||||||||||||||||||||||   |||||||| ||| ||| | |||||||  || ||||| |  ||||||| || |||||||| |||||||||||| ||    
T  27801364 gggtcttgttaacgagtgcccccatgacactctttaatcattctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcat 27801265  T
Q  252 taca 255  Q
    ||||    
T  27801264 taca 27801261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 42760282 - 42760174
Alignment:
Q  156 gtcttgttaacgagtgcccc-ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattac 254  Q
    ||||||||||||||| |||| ||||||||| ||||||| |||||   | ||| ||||||  |||||| | |||| || ||| || |||||||||||||||    
T  42760282 gtcttgttaacgagttcccctggacactctttaagcattccaaaaggagaaattattccataaaaaaatcaaatgtttcaatttccaatgcattgattac 42760183  T
Q  255 ataaatttt 263  Q
    |||| ||||    
T  42760182 ataattttt 42760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 11993803 - 11993842
Alignment:
Q  153 agggtcttgttaacgagtgccccggacactctataagcat 192  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  11993803 agggtcttgttaatgagtgccccggacactctttaagcat 11993842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 9629872 - 9629839
Alignment:
Q  237 tttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||||||||||||||| |||||||||||||    
T  9629872 tttcaatgcattgattacattaattttcataaaa 9629839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 10893528 - 10893475
Alignment:
Q  193 cccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgca 246  Q
    |||||||||||||| ||||| |  ||||||| |||||||| |||||||||||||    
T  10893528 cccaaatttaaaaattattcattcaaaaagtcaaatattataaatttcaatgca 10893475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 15353883 - 15353790
Alignment:
Q  177 gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||||  ||| |||| ||||||| ||||||||  | |||||||| ||||||||||||||||||   ||| |||| | || |||||||||||    
T  15353883 gacactcttcaaggatcctaaatttataaaatattttttaaaaaagtgaaatattacaaatttcaaaatattaattatacaatttttcataaaa 15353790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 41385235 - 41385358
Alignment:
Q  156 gtcttgttaacgagtgccccgga--cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    |||||||||||||||| ||| ||  || ||| ||||||  ||||| | | ||| ||||||| || ||||| | || || ||| |||||||| ||||||||    
T  41385235 gtcttgttaacgagtgtccccgaggcattctttaagcaatccaaaataagaaattattccttaagaaagtcagatgtttcaattttcaatgtattgatta 41385334  T
Q  254 cataaattttcataaaatcttact 277  Q
    || ||||||||| ||||| |||||    
T  41385335 cacaaattttcacaaaattttact 41385358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 46726109 - 46726222
Alignment:
Q  158 cttgttaacgagtgcccc-ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacat 256  Q
    |||||||||||||||||| || |||||| |||| || ||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||    
T  46726109 cttgttaacgagtgcccccgggcactctttaaggataccaaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattacat 46726208  T
Q  257 aaattttcataaaa 270  Q
    |  |||||||||||    
T  46726209 agtttttcataaaa 46726222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 2347390 - 2347503
Alignment:
Q  159 ttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacat 256  Q
    |||||||||||||||||  ||| |||||  ||| || |||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  2347390 ttgttaacgagtgcccctaggatactcttaaaggattccaaatttagtaaatattcctcaaaaaaatcaaatattacaaatttcaatgcattgattacat 2347489  T
Q  257 aaattttcataaaa 270  Q
    ||||||| ||||||    
T  2347490 aaattttaataaaa 2347503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 36939466 - 36939562
Alignment:
Q  179 cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatctta 275  Q
    |||||| |||| |||  |||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||| |||||| ||||||| ||||    
T  36939466 cactctttaaggatcttaaatttaaaaaatattcctcaaaaaagtcaaatgttacaaatttcagtgcattaattacacaaatttacataaaaactta 36939562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 47639186 - 47639270
Alignment:
Q  186 taagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||| |||| ||||||||||||||||| | |||||| |||||| |||||||||| |||| |||||||||| || |||| ||||||    
T  47639186 taaggatcctaaatttaaaaaatattctttaaaaaaattaaatgttacaaattttaatgtattgattacacaattttttataaaa 47639270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 2959685 - 2959594
Alignment:
Q  179 cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||| |||| |||  ||||| ||||||||||  |  |||||||||||| ||| |||||| |||||||||||||||||| |||||||||||    
T  2959685 cactctttaaggatcataaattaaaaaaatattttttgaaaaagttaaatgttataaattttaatgcattgattacataatttttcataaaa 2959594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 33887965 - 33887874
Alignment:
Q  177 gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaa 269  Q
    |||||||| ||||||| ||||| | || || ||||| | |||||||| ||||||| ||| ||||||||||||||||||||  |||||||||||    
T  33887965 gacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattacat-tattttcataaa 33887874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 21512990 - 21513031
Alignment:
Q  151 ttagggtcttgttaacgagtgccccggacactctataagcat 192  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  21512990 ttagggtcttgttaacgagtgtcccggacactctttaagcat 21513031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 27123242 - 27123338
Alignment:
Q  154 gggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcatt 248  Q
    ||||||||||||||||||||||  || |||||| |||||||||||||||||  ||  |||| |  ||||||| || |||||||| || |||||||||    
T  27123242 gggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcatt 27123338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 35599939 - 35599822
Alignment:
Q  155 ggtcttgttaacgagtgcc-ccg-gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatt 252  Q
    ||||||||||||||||||| ||| || ||||| ||| ||| | |||||   ||| ||||| | |||||| | ||||| | |||||||||||||||||| |    
T  35599939 ggtcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatgcattgaat 35599840  T
Q  253 acataaattttcataaaa 270  Q
    |||||| |||||||||||    
T  35599839 acataacttttcataaaa 35599822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 15995921 - 15995973
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataa 268  Q
    |||||||||||||||| | | ||||||||||||||||||| | ||||||||||    
T  15995921 aaaaaagttaaatatttcgattttcaatgcattgattacacatattttcataa 15995973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 4133864 - 4133810
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||| | |||| |||||||||||||||||||||||| | | ||||||||||||    
T  4133864 aaaaaaatcaaatgttacaaatttcaatgcattgattataaagattttcataaaa 4133810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 27337658 - 27337783
Alignment:
Q  145 ttatagttagggtcttgttaacgagtgc-cccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaat 243  Q
    ||||| ||||||| |||||||||| ||| |||||||||||| |||| ||| ||||||||| || ||||| | |||||| | || |||||||  || ||||    
T  27337658 ttatatttagggttttgttaacgaatgctcccggacactctttaag-atctcaaatttaacaattattctttaaaaaaatcaactattacagtttacaat 27337756  T
Q  244 gcattgattacataaattttcataaaa 270  Q
     |||| | |||| || |||||||||||    
T  27337757 acattaaatacacaacttttcataaaa 27337783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 33123791 - 33123849
Alignment:
Q  208 tattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcat 266  Q
    ||||||| ||||||||||| | |||||| ||||| |||||||| ||||| |||||||||    
T  33123791 tattccttaaaaaagttaacttttacaattttcattgcattgaatacatgaattttcat 33123849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 36189481 - 36189571
Alignment:
Q  186 taagcatcccaaatttaaaaaatattcc-tcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatctta 275  Q
    |||| |||||||||||| |||||||||  | |||||||  ||||||| |||||| ||||  |||||||||| | |||||||||||| ||||    
T  36189481 taaggatcccaaatttagaaaatattctataaaaaaagccaaatattgcaaattccaatatattgattacacatattttcataaaaactta 36189571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 22618801 - 22618732
Alignment:
Q  186 taagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    |||| |||||||||||||||| |||| ||  |||| || || |||||||| |||||||||||||| ||||    
T  22618801 taaggatcccaaatttaaaaattatttcttcaaaatgtcaactattacaattttcaatgcattgactaca 22618732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 8920843 - 8920723
Alignment:
Q  151 ttagggtcttgttaacgagtgccccgga-cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattg 249  Q
    ||||| |||||||||||| | |||| || |||||| ||||||| |||||   | ||| ||||||  | |||||| |||| || ||| || ||||||||||    
T  8920843 ttaggatcttgttaacgaattcccccgagcactctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatgcattg 8920744  T
Q  250 attacataaattttcataaaa 270  Q
    ||||||||| |||||| ||||    
T  8920743 attacataacttttcaaaaaa 8920723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 10032057 - 10031942
Alignment:
Q  156 gtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    |||| |||||||||||||||  ||||||||| ||||||| ||||| |||  || ||||  |  |||||||||||| || | | || ||||||||||||||    
T  10032057 gtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgatta 10031958  T
Q  254 cataaattttcataaa 269  Q
    || |  ||||||||||    
T  10031957 cacactttttcataaa 10031942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 14574765 - 14574817
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataa 268  Q
    |||||||||||||| | | | ||||||||||||||||||| | ||||||||||    
T  14574765 aaaaaagttaaatacttcgattttcaatgcattgattacacatattttcataa 14574817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 20397542 - 20397482
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||||||| ||| ||| |||||||||||||| | || | ||||||||||||| |||||    
T  20397542 aaaaagttaaacatttcaattttcaatgcattgaatgcacacattttcataaaatattact 20397482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 41583510 - 41583629
Alignment:
Q  153 agggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||||||||||||  || |||||| |||| |||||||||||| ||| |||||||  |||||||||||||||||||||| |||||||||||    
T  41583510 agggtcttgttaacgagtgcccccgggtcactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattga 41583609  T
Q  251 ttacataaattttcataaaa 270  Q
     |||| | ||||||||||||    
T  41583610 atacacagattttcataaaa 41583629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 3124715 - 3124754
Alignment:
Q  236 atttcaatgcattgattacataaattttcataaaatctta 275  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  3124715 atttcaatgcattgattatataaattttcataaaatctta 3124754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 30501277 - 30501164
Alignment:
Q  155 ggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatt 252  Q
    |||||||||||||||||||||  || |||||| |||||||||||||||||  || ||||| |  ||||||| || |||||||| || |||| |||| | |    
T  30501277 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaat 30501178  T
Q  253 acataaattttcat 266  Q
    ||| || |||||||    
T  30501177 acacaacttttcat 30501164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 30541620 - 30541507
Alignment:
Q  155 ggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatt 252  Q
    |||||||||||||||||||||  || |||||| |||||||||||||||||  || ||||| |  ||||||| || |||||||| || |||| |||| | |    
T  30541620 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaat 30541521  T
Q  253 acataaattttcat 266  Q
    ||| || |||||||    
T  30541520 acacaacttttcat 30541507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 2827660 - 2827579
Alignment:
Q  194 ccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatctta 275  Q
    ||||||||| ||||||||  | || ||||| |||| |||||| |||||||||||||||| || ||||||| |||||| ||||    
T  2827660 ccaaatttagaaaatattatttaagaaagtcaaatgttacaagtttcaatgcattgattgcacaaattttaataaaaactta 2827579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 8761959 - 8762008
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttca 265  Q
    |||||||||||||||| ||| |||||||| |||||| |||||||||||||    
T  8761959 aaaaaagttaaatatttcaattttcaatgtattgatgacataaattttca 8762008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 12198206 - 12198281
Alignment:
Q  194 ccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||||||||||||||  | ||||| || ||||||||||||||||||||| || ||| || | ||||||||||||    
T  12198206 ccaaatttaaaaaatattgtttaaaaa-gtcaaatattacaaatttcaatgctttaattgcacatattttcataaaa 12198281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 18229740 - 18229644
Alignment:
Q  153 agggtcttgttaacgagtgccccggac-actctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcatt 248  Q
    |||||||||||||||||||||||  |  ||||| |||||||||||||||||  || ||||| |  |||||||||| |||||||| || |||| ||||    
T  18229740 agggtcttgttaacgagtgcccccaagtactctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacatt 18229644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 270
Target Start/End: Original strand, 31672379 - 31672498
Alignment:
Q  154 gggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcc-tcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    ||||||||||||||||||||||  || |||||| ||||||| |||||   | ||| |||||| | |||||||| |||| || ||| || |||||||||||    
T  31672379 gggtcttgttaacgagtgcccccggggcactctttaagcattccaaaaggagaaactattccataaaaaaagtcaaatgtttcaatttccaatgcattga 31672478  T
Q  251 ttacataaattttcataaaa 270  Q
    ||||| ||| ||||| ||||    
T  31672479 ttacaaaaaatttcaaaaaa 31672498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 7210897 - 7211000
Alignment:
Q  153 agggtcttgttaacgagtgc-cccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgat 251  Q
    |||||||||||||| ||| | ||| |||||| | |||| |||| ||||||||||| ||||| | |||||||||||| | | |||||| ||||| |||||     
T  7210897 agggtcttgttaacaagtcctcccagacactttttaagtatcctaaatttaaaaattattcgttaaaaaagttaaacacttcaaattccaatgtattgaa 7210996  T
Q  252 taca 255  Q
    ||||    
T  7210997 taca 7211000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 7719170 - 7719232
Alignment:
Q  152 tagggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattc 212  Q
    ||||||||| ||||||||||||||  ||||||||| ||||||| ||| ||||||||| |||||    
T  7719170 tagggtctttttaacgagtgcccccgggacactctttaagcataccatatttaaaaattattc 7719232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 27536774 - 27536735
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  27536774 aaaaaagtcaaatattacaaatttgaatgcattgattaca 27536735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 2112510 - 2112552
Alignment:
Q  151 ttagggtcttgttaacgagtgccc-cggacactctataagcat 192  Q
    |||||||||||||||||||||||| |||||||||| |||||||    
T  2112510 ttagggtcttgttaacgagtgccctcggacactctttaagcat 2112552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 31558100 - 31558046
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||| | |||| |||||||||||||| |||| |||| ||||||||||||||||    
T  31558100 aaaaaaatcaaatgttacaaatttcaatacatttattatataaattttcataaaa 31558046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 12448703 - 12448756
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaa 269  Q
    |||||||||||||||| ||| |||||||||| |||||||| ||| ||| |||||    
T  12448703 aaaaaagttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 12448756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 141842 - 141886
Alignment:
Q  154 gggtcttgttaacgagtgccccggacactctataagcatcccaaa 198  Q
    |||| ||||||||||||||||| |||||||| ||||||| |||||    
T  141842 gggttttgttaacgagtgccccagacactctttaagcataccaaa 141886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 24232444 - 24232388
Alignment:
Q  200 ttaaaaaatattcctcaaaaaagtt-aaatattacaaatttcaatgcattgattaca 255  Q
    ||||||||||||| | ||||||||  |||||||||||||||||||| | ||||||||    
T  24232444 ttaaaaaatattctttaaaaaagtacaaatattacaaatttcaatggaatgattaca 24232388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 24232538 - 24232487
Alignment:
Q  191 atcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaat 243  Q
    |||| ||||||||||||||||  | |||||| |||||||||||||||||||||    
T  24232538 atcctaaatttaaaaaatattatttaaaaaa-ttaaatattacaaatttcaat 24232487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 25438016 - 25437973
Alignment:
Q  151 ttagggtcttgttaacgagtgcccc--ggacactctataagcat 192  Q
    |||||||||||||||||||||||||  ||||||||| |||||||    
T  25438016 ttagggtcttgttaacgagtgcccccgggacactctttaagcat 25437973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 26407600 - 26407532
Alignment:
Q  202 aaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||| ||||| | || ||| ||||||||| ||| |||||||| ||| |||| ||||||||||||||||    
T  26407600 aaaaattattctttaataaaattaaatatttcaattttcaatgaattaattatataaattttcataaaa 26407532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 29342303 - 29342350
Alignment:
Q  153 agggtcttgttaacgagtgccccgg--acactctataagcatcccaaa 198  Q
    |||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  29342303 agggtcttgttaacgagtgccccgggaacactctttaagcattccaaa 29342350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 45529258 - 45529132
Alignment:
Q  153 agggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    ||||| || |||||||||||||   || |||||| ||||||||||||||||| ||||||||| |||||||||| |||  |||||| ||||| ||||||||    
T  45529258 agggtattcttaacgagtgccctcggggcactctttaagcatcccaaatttagaaaatattcttcaaaaaagtcaaacgttacaagtttcagtgcattga 45529159  T
Q  251 ttacataaattttcataaaatcttact 277  Q
    |||||||||||||||||||| ||||||    
T  45529158 ttacataaattttcataaaaacttact 45529132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 48811507 - 48811381
Alignment:
Q  153 agggtcttgttaacgagtgc--cccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||| |||||  ||  |||| ||| |||| |||| ||||||| ||||||||| | ||||||||  ||| |||||||||||||||||||||    
T  48811507 agggtcttgttaactagtgcatccaagacattctttaaggatcctaaatttagaaaatattcattaaaaaagtctaatgttacaaatttcaatgcattga 48811408  T
Q  251 ttacataaattttcataaaatcttact 277  Q
    ||||| || ||||||||||| ||||||    
T  48811407 ttacacaatttttcataaaaacttact 48811381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 38723212 - 38723326
Alignment:
Q  157 tcttgttaacgagtgccccgga-cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    ||||||||||||||||||| || |||||| |||| |||||||||||||||||||||| | |||||| |||||| ||| ||||| |||| || ||||||||    
T  38723212 tcttgttaacgagtgccccagagcactctttaaggatcccaaatttaaaaaatattctttaaaaaaattaaatgttataaattccaatacactgattaca 38723311  T
Q  256 taaattttcataaaa 270  Q
     | |||||| |||||    
T  38723312 cagattttcgtaaaa 38723326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 25753481 - 25753578
Alignment:
Q  180 actctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||| |||||||  |||||||| ||||||||| |||| ||||| |||| ||| || |||||||||||| ||||||||||||||||||||| ||||||    
T  25753481 actctttaagcatatcaaatttagaaaatattcttcaataaagtcaaatgttataagtttcaatgcattaattacataaattttcataaaaacttact 25753578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 34591188 - 34591102
Alignment:
Q  191 atcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||||| |||||||||||||| ||||||  ||||| |||||||||||||| ||||  ||||| | |||||||||||| ||||||    
T  34591188 atcccaaatataaaaaatattccttaaaaaaagtaaatgttacaaatttcaatacattagttacacatattttcataaaaacttact 34591102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 46110963 - 46110890
Alignment:
Q  180 actctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    ||||| |||| |||| |||||||||||||||||||||||||  |||||| |||||||||||||| |||| ||||    
T  46110963 actctttaaggatcctaaatttaaaaaatattcctcaaaaagattaaatgttacaaatttcaatacatttatta 46110890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 40425082 - 40425208
Alignment:
Q  153 agggtcttgttaacgagtgcc--ccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||| |||||   | || |||||| |||  |||||||||||| |||||||| || ||||| ||||||| ||||||||| |||| ||||||    
T  40425082 agggtcttgttaacaagtgctttcggggcactctttaaagatcccaaatttagaaaatatttcttaaaaatgttaaatgttacaaattccaatacattga 40425181  T
Q  251 ttacataaattttcataaaatcttact 277  Q
    ||||| |  |||| |||||| ||||||    
T  40425182 ttacaaatttttttataaaaacttact 40425208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 4305278 - 4305156
Alignment:
Q  156 gtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    ||||||||||||||||||||  || |||||| |||| || | ||||||| || |||||  | |||||||| |||||||| |||||  |||| ||||||||    
T  4305278 gtcttgttaacgagtgcccctggggcactctttaaggatactaaatttagaatatattttttaaaaaagtcaaatattataaattctaatgtattgatta 4305179  T
Q  254 cataaattttcataaaatcttac 276  Q
    ||  | ||||||||||| |||||    
T  4305178 cacgatttttcataaaaacttac 4305156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 26900136 - 26900046
Alignment:
Q  179 cactctataagcatcccaaatttaaaaaat-attcctc-aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcata 267  Q
    |||||| |||||||||||||| | |||||| |||| |  |||||||| || |||||||| |||||||||||| ||||||||| ||||||||    
T  26900136 cactctttaagcatcccaaatgtgaaaaattattcttttaaaaaagtcaactattacaattttcaatgcatttattacataacttttcata 26900046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 28874504 - 28874578
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||| |||| |||| | |||||||| |||| ||||||||| |||||||||||||||| |  |||||||||||    
T  28874504 aaatttagaaaacattctttaaaaaagtaaaatgttacaaattccaatgcattgattacacagtttttcataaaa 28874578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 38156577 - 38156524
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||| |||| |||||||||||||||||||||||||| | ||||| ||||||    
T  38156577 aaaaagtcaaatgttacaaatttcaatgcattgattacacatattttaataaaa 38156524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 48180307 - 48180207
Alignment:
Q  156 gtcttgttaacgagtg--ccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    ||||||||||||||||   || ||||||||| |||||||||| ||||||| || ||||| |  ||||||| || |||||||| || |||||||||| |||    
T  48180307 gtcttgttaacgagtgtctccgggacactctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaatttccaatgcattggtta 48180208  T
Q  254 c 254  Q
    |    
T  48180207 c 48180207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 48602245 - 48602314
Alignment:
Q  186 taagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    |||| ||| |||||||| ||||||||||| |||||||| |||| | ||||||| ||||||||| ||||||    
T  48602245 taaggatcacaaatttagaaaatattccttaaaaaagtcaaatgtgacaaattccaatgcattaattaca 48602314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 30082496 - 30082449
Alignment:
Q  230 ttacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||||| || ||||||||||||| || ||||||||||||||||||    
T  30082496 ttacaaattccattgcattgattacacaacttttcataaaatcttact 30082449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 37745013 - 37745060
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaatttt 263  Q
    |||||| ||||||||||||| ||| ||||||||||||||| |||||||    
T  37745013 aaaaaaattaaatattacaatttttaatgcattgattacacaaatttt 37745060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 25548272 - 25548218
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||||||||||| ||| ||  ||||||||||||||| | ||||||||||||    
T  25548272 aaaaaagttaaatatttcaatttctaatgcattgattacacatattttcataaaa 25548218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 182
Target Start/End: Original strand, 27968166 - 27968196
Alignment:
Q  152 tagggtcttgttaacgagtgccccggacact 182  Q
    |||||||||||||||||||||||||||||||    
T  27968166 tagggtcttgttaacgagtgccccggacact 27968196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 35763710 - 35763676
Alignment:
Q  241 aatgcattgattacataaattttcataaaatctta 275  Q
    |||||||||| ||||||||||||||||||||||||    
T  35763710 aatgcattgaatacataaattttcataaaatctta 35763676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 45566155 - 45566109
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaatttt 263  Q
    ||||||||||||||| ||| |||||||| ||| ||||||||||||||    
T  45566155 aaaaagttaaatatttcaattttcaatgtatttattacataaatttt 45566109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 51039787 - 51039841
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||| ||||| | ||| |||||||| ||||| |||||||||||||||||||    
T  51039787 aaaaaagtcaaatagttcaattttcaatgaattgaatacataaattttcataaaa 51039841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 55110059 - 55110113
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||| | ||||||| | | ||||||||||||||||||||| ||||||||||||    
T  55110059 aaaaaaatcaaatatttcgattttcaatgcattgattacatatattttcataaaa 55110113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 19898167 - 19898122
Alignment:
Q  225 aaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||| ||| ||||||||||||||||||| | ||||||||||||    
T  19898167 aaatatttcaattttcaatgcattgattacacatattttcataaaa 19898122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 32071127 - 32071200
Alignment:
Q  197 aatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||| ||||||||||| |||||| | |||| ||||||||| ||| || |||||||| ||  |||||||||||    
T  32071127 aatttagaaaatattccttaaaaaattcaaatgttacaaattccaaagctttgattacctagtttttcataaaa 32071200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 53038294 - 53038367
Alignment:
Q  199 tttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatc 272  Q
    |||||||||||||| |  ||||| | |||||||||||||| ||||||| ||| |||   |||||||||||||||    
T  53038294 tttaaaaaatattctttcaaaaattcaaatattacaaattccaatgcactgaatacgcgaattttcataaaatc 53038367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 53433260 - 53433211
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttca 265  Q
    |||||||| |||||||  || |||| ||||||||||||||||||||||||    
T  53433260 aaaaaagtcaaatattttaattttcgatgcattgattacataaattttca 53433211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 31419241 - 31419293
Alignment:
Q  218 aaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||| |||||||||  || |||||||| |||||||||||||||||||| ||||    
T  31419241 aaaaattaaatatttaaattttcaatgtattgattacataaattttcaaaaaa 31419293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 22440247 - 22440156
Alignment:
Q  186 taagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||||||||||||| ||||||||| |||||||| | |||| |||||| ||||||||||||||||||||| |||||||||||| ||||||    
T  22440247 taagcatcccaaatttagaaaatattcttcaaaaaattcaaatgttacaagtttcaatgcattgattacatatattttcataaaaacttact 22440156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 24762853 - 24762727
Alignment:
Q  153 agggtcttgttaacgagtgcc--ccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||||||||||  | || |||||| |||| |||||||||||| ||||||||||| |||||||| |||||||||||||| ||||  |||||    
T  24762853 agggtcttgttaacgagtgccttcaggtcactctttaaggatcccaaatttagaaaatattccttaaaaaagtcaaatattacaaattccaatatattga 24762754  T
Q  251 ttacataaattttcataaaatcttact 277  Q
    ||| | | ||||| |||||| ||||||    
T  24762753 ttatacatatttttataaaaacttact 24762727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 24765302 - 24765428
Alignment:
Q  153 agggtcttgttaacgagtgccccgga--cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    ||||||||||||||||||||| |  |  |||||| |||| |||||||||||| ||||||||||| |||||| | |||||||||||||| |||||||||||    
T  24765302 agggtcttgttaacgagtgcctctaaagcactctttaaggatcccaaatttagaaaatattccttaaaaaaatcaaatattacaaattccaatgcattga 24765401  T
Q  251 ttacataaattttcataaaatcttact 277  Q
    ||||| | ||||| |||| | ||||||    
T  24765402 ttacacatatttttataataacttact 24765428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 34234022 - 34233950
Alignment:
Q  190 catcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattt 262  Q
    |||||||||||||  ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  34234022 catcccaaatttagtaaatattactcaaaaaagtcaaatattacaaatttcaatgcattgattacacaaattt 34233950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 24791996 - 24792083
Alignment:
Q  191 atcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacata-aattttcataaaatcttact 277  Q
    |||||||||||| ||||||||| | |||||||| |||| ||||||||| |||||||||||||||||| |||||| |||||| ||||||    
T  24791996 atcccaaatttagaaaatattctttaaaaaagtcaaatgttacaaattccaatgcattgattacatataatttttataaaaacttact 24792083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 35022619 - 35022699
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttac 276  Q
    |||||||||||||||| || |||||||| |||||||| |||||| ||||||||||||||| | ||||| |||||| |||||    
T  35022619 aaatttaaaaaatatttcttaaaaaagtcaaatattataaattttaatgcattgattacacatattttaataaaaacttac 35022699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 20128300 - 20128401
Alignment:
Q  156 gtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    ||||||| ||||||||||||  ||||||||| |||| |||| ||||||| ||  ||||| | |||||||| |||| ||||||||| ||||||||||||||    
T  20128300 gtcttgtaaacgagtgcccccgggacactctttaaggatcctaaatttataatttattctttaaaaaagtcaaatgttacaaattccaatgcattgatta 20128399  T
Q  254 ca 255  Q
    ||    
T  20128400 ca 20128401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 15690284 - 15690191
Alignment:
Q  177 gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||| |||| | | |||||| | |||||||| ||||||||| | ||||||||||||||| ||||||||||||||| | ||||| ||||||    
T  15690284 gacactctttaaggaactcaaattaagaaaatatttctcaaaaaaatcaaatattacaaattttaatgcattgattacacatatttttataaaa 15690191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 35443587 - 35443506
Alignment:
Q  195 caaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttac 276  Q
    ||||||||||||||||| ||||||||||| |||| ||| |||||| |||||| |||||||| |||||||  ||||| |||||    
T  35443587 caaatttaaaaaatatttctcaaaaaagtcaaatgttataaattttaatgcactgattacacaaatttttgtaaaaacttac 35443506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 45522702 - 45522783
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    |||||||||||||||| | |||||||||||||| ||| |||||||||| |||||||||  || |||||  ||||||||||||    
T  45522702 aaatttaaaaaatatttcacaaaaaagttaaatgttataaatttcaatacattgattatgtagatttttctaaaatcttact 45522783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 5962104 - 5961988
Alignment:
Q  153 agggtcttgttaacgagtgcc-ccg-gacactctataagcatcccaaattta-aaaaatattcc-tcaaaaaagttaaatattacaaatttcaatgcatt 248  Q
    ||||||||||||||||||||| ||| |||||||| ||||||| | |||   | ||||||||||| | |||||| ||||||||| ||| || |||||||||    
T  5962104 agggtcttgttaacgagtgcctccgagacactctttaagcattctaaaagaagaaaaatattccataaaaaaaattaaatatttcaatttccaatgcatt 5962005  T
Q  249 gattacataaattttca 265  Q
    |||||||||||||||||    
T  5962004 gattacataaattttca 5961988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 37978501 - 37978559
Alignment:
Q  191 atcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattg 249  Q
    |||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||||||    
T  37978501 atcccaaatttagaaaatattctttaaaaaagtcaaatattacaaattttaatgcattg 37978559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 4616871 - 4616916
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaattt 262  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  4616871 aaaaagttaaatattacaattttcaatgcattgattacatagattt 4616916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 270
Target Start/End: Original strand, 13538363 - 13538482
Alignment:
Q  154 gggtcttgttaacgagtgccccgga---cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||||||||||| ||   |||||| ||||||| | |||||  |||| ||||| | |||||| | ||||| | ||| || |||||||||||    
T  13538363 gggtcttgttaacgagtgcccccgagggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattga 13538462  T
Q  251 ttacataaattttcataaaa 270  Q
     ||||||| |||||||||||    
T  13538463 atacataacttttcataaaa 13538482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 814998 - 815089
Alignment:
Q  186 taagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||||||||||||| ||| ||||  | |||||| | |||| | ||||||| ||||||||||||||||   |||||||||||| ||||||    
T  814998 taagcatcccaaatttagaaattattttttaaaaaaatcaaatgtcacaaattccaatgcattgattacaccgattttcataaaaacttact 815089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 39445525 - 39445466
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    ||||||||||||||||  | ||||||||||||| ||| ||||||||||||| ||||||||    
T  39445525 aaatttaaaaaatattttttaaaaaagttaaatgttagaaatttcaatgcactgattaca 39445466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 6761800 - 6761746
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||| ||||||| ||| || |||||||||||||||||||||||||| ||||    
T  6761800 aaaaaagtcaaatatttcaatttccaatgcattgattacataaattttcaaaaaa 6761746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 8964424 - 8964477
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaa 269  Q
    |||||||| ||||||| ||| || |||||||||||||||| |||||||||||||    
T  8964424 aaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaa 8964477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 14295602 - 14295714
Alignment:
Q  159 ttgttaacgagtgccccg-gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacata 257  Q
    ||||||||||||| |||  |||| ||| |||| ||||||||||||  || ||||| |  |||| ||||| |||||||| |||||||||||||| |||| |    
T  14295602 ttgttaacgagtgtcccatgacattctttaagaatcccaaatttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacaca 14295701  T
Q  258 aattttcataaaa 270  Q
    | |||| ||||||    
T  14295702 actttttataaaa 14295714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 20555589 - 20555489
Alignment:
Q  156 gtcttgttaacgagtgccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaa-gttaaatattacaaatttcaatgcattgattac 254  Q
    |||||||||||||||||   |||||||||||||  || | ||| ||||||||||||  | |||||| ||||||| ||| ||||| |||| ||||||||||    
T  20555589 gtcttgttaacgagtgctttggacactctataaagattctaaaattaaaaaatatttattaaaaaaagttaaatgttataaattccaatacattgattac 20555490  T
Q  255 a 255  Q
    |    
T  20555489 a 20555489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 38533483 - 38533432
Alignment:
Q  153 agggtcttgttaacgagtgccc-cggacactctataagcatcccaaatttaa 203  Q
    |||||||||||||||||||||| || ||||||| |||||||| |||||||||    
T  38533483 agggtcttgttaacgagtgccctcgtacactctttaagcatctcaaatttaa 38533432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 45255473 - 45255520
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaatttt 263  Q
    |||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  45255473 aaaaaaatcaaatattacaattttcaatgcattgattacacaaatttt 45255520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 1335023 - 1334926
Alignment:
Q  153 agggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcatt 248  Q
    ||||||||||||||||||  | |  || |||||| |||||||||||||||||| || ||||| | |||||| | || |||||||| || |||||||||    
T  1335023 agggtcttgttaacgagtatctccggggcactctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcatt 1334926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 3206543 - 3206601
Alignment:
Q  195 caaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    ||||||||||||||||||    ||||||| |||||||||||||||||||| ||| ||||    
T  3206543 caaatttaaaaaatattcaattaaaaagtcaaatattacaaatttcaatgtattaatta 3206601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 13081931 - 13082009
Alignment:
Q  176 ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattac 254  Q
    ||||||||| |||| ||| |||||||| |||||| || | ||||||||||| | |||||||||  ||| ||||||||||    
T  13081931 ggacactctttaaggatctcaaatttataaaataatcattaaaaaagttaagtgttacaaattctaatacattgattac 13082009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 20064876 - 20064997
Alignment:
Q  151 ttagggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcatt 248  Q
    ||||||||||||||||||||||| |  || |||||| |||| |||| |||| ||  || ||||| |  ||||||| || |||||||| |||||||| |||    
T  20064876 ttagggtcttgttaacgagtgcctctagggcactctttaaggatcctaaatatagtaattattcttttaaaaagtcaactattacaattttcaatgtatt 20064975  T
Q  249 gattacataaattttcataaaa 270  Q
     | |||| || |||||||||||    
T  20064976 aaatacacaatttttcataaaa 20064997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 38534006 - 38533956
Alignment:
Q  153 agggtcttgttaacgagtgccc-cggacactctataagcatcccaaattta 202  Q
    |||||||||||||||||||||| ||||||| || |||||||| ||||||||    
T  38534006 agggtcttgttaacgagtgccctcggacaccctttaagcatctcaaattta 38533956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 41073179 - 41073129
Alignment:
Q  225 aaatattacaaatttcaatgcattgattacataaattttcataaaatctta 275  Q
    |||||||| ||||||||||||||||| || ||| |||||||||||| ||||    
T  41073179 aaatattataaatttcaatgcattgaatatatatattttcataaaaactta 41073129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 42966989 - 42967043
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||||||||||| ||| |  | |||||||||||||||||||||||| ||||    
T  42966989 aaaaaagttaaatatttcaattcccgatgcattgattacataaattttcaaaaaa 42967043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 13197283 - 13197336
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||| ||||||| ||| ||| |||||||| |||||||||||||| ||||||    
T  13197283 aaaaagtcaaatatttcaatttttaatgcattaattacataaatttttataaaa 13197336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 18227146 - 18227207
Alignment:
Q  208 tattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaa 269  Q
    ||||| ||| |||||| ||||||| | | ||||||||||||||||| ||| |||||||||||    
T  18227146 tattcttcataaaagtcaaatatttcgattttcaatgcattgattaaatacattttcataaa 18227207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 20211571 - 20211510
Alignment:
Q  194 ccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    ||||||||||||||||||| | ||| || | |||| |||||||||||||| |||| ||||||    
T  20211571 ccaaatttaaaaaatattctttaaataaatcaaatgttacaaatttcaatacattaattaca 20211510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 25622574 - 25622618
Alignment:
Q  225 aaatattacaaatttcaatgcattgattacataaattttcataaa 269  Q
    ||||||||||| |||||||||||| ||||||||  ||||||||||    
T  25622574 aaatattacaattttcaatgcattaattacatattttttcataaa 25622618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 153 - 278
Target Start/End: Original strand, 15588622 - 15588749
Alignment:
Q  153 agggtcttgttaacgagtgc--cccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||| |||||  ||  |||| ||| |||| ||  |||||||| ||||||||| | |||||| |||||| |||||||||||||||||||||    
T  15588622 agggtcttgttaacaagtgcttccgagacattctttaaggatatcaaatttataaaatattctttaaaaaaattaaatgttacaaatttcaatgcattga 15588721  T
Q  251 ttacataaattttcataaaatcttactg 278  Q
    |||||||| ||||||||||| |||||||    
T  15588722 ttacataatttttcataaaaacttactg 15588749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 3766249 - 3766360
Alignment:
Q  155 ggtcttgttaacgagtgccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattac 254  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||  ||| ||||| |  ||||||| || |||||||| ||  ||| |||| |||||    
T  3766249 ggtcttgttaacgagtgccccgg-cactctttaagcatcccaaatttggaaattattcttttaaaaagtcaattattacaatttataatacattcattac 3766347  T
Q  255 ataaattttcata 267  Q
    |||| ||||||||    
T  3766348 ataacttttcata 3766360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 4806643 - 4806516
Alignment:
Q  153 agggtcttgttaacgagtgcc--ccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaa-gttaaatattacaaatttcaatgcattg 249  Q
    ||||||||||||||||||| |  | ||| | ||| |||  ||| ||||| |||||||||||||| |||||| | ||||| |||||||||||||| |||||    
T  4806643 agggtcttgttaacgagtgtcttcgggatattctttaaagatctcaaatataaaaaatattccttaaaaaaaggtaaatgttacaaatttcaatacattg 4806544  T
Q  250 attacataaattttcataaaatcttact 277  Q
    |||||| | |||||||||||| ||||||    
T  4806543 attacacatattttcataaaaacttact 4806516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 30396288 - 30396333
Alignment:
Q  225 aaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  30396288 aaatattacaattttcaatgcattgattacataaattttcaaaaaa 30396333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 35229259 - 35229379
Alignment:
Q  153 agggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||||||||||||  ||||||||| |||| | ||||||||||   | ||||| |  ||||||| | |||||||||||| |||| ||||||    
T  35229259 agggtcttgttaacgagtgcccccgggacactctttaaggaacccaaatttagcgattattctttcaaaaagtcacatattacaaattccaatacattga 35229358  T
Q  251 ttacataaattttcataaaat 271  Q
      ||| || ||||||||||||    
T  35229359 acacacaacttttcataaaat 35229379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 6555132 - 6555051
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||| ||| ||||||| |||||||| |||| ||| ||||||||||||||| ||||||   ||||| |||||| ||||||    
T  6555132 aaatttagaaagtattccttaaaaaagtcaaatgttataaatttcaatgcattaattacactgatttttataaaaacttact 6555051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 7465509 - 7465558
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttca 265  Q
    |||||||| ||||||| ||| || | ||||||||||||||||||||||||    
T  7465509 aaaaaagtcaaatatttcaatttccgatgcattgattacataaattttca 7465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 10346068 - 10346023
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaatt 261  Q
    |||||||||||| | | ||| |||||||||||||||||||||||||    
T  10346068 aaaaaagttaaaaacttcaattttcaatgcattgattacataaatt 10346023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 27843280 - 27843231
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttca 265  Q
    |||||||| ||||||| ||| |||||||||| | ||||||||||||||||    
T  27843280 aaaaaagtcaaatatttcaattttcaatgcactcattacataaattttca 27843231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 25028833 - 25028733
Alignment:
Q  156 gtcttgttaacgagtgcc-ccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattac 254  Q
    ||||||||||||| |||| ||||||||||| ||| ||| | |||||  |||| ||||| | |||||||| ||| | | ||| |||||||||||||| |||    
T  25028833 gtcttgttaacgaatgcctccggacactctttaaacattcaaaattagaaaattattctttaaaaaagtcaaacagttcaattttcaatgcattgaatac 25028734  T
Q  255 a 255  Q
    |    
T  25028733 a 25028733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 41370309 - 41370181
Alignment:
Q  151 ttagggtcttgttaacgagtgcc-ccgga-cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcatt 248  Q
    |||||||||||||||||||||   ||||| |||||  ||||||  ||||||| | ||| |||| ||||||||||||||||||| ||| ||||||||||||    
T  41370309 ttagggtcttgttaacgagtgtttccggagcactcattaagcaatccaaattaagaaattatttctcaaaaaagttaaatatttcaattttcaatgcatt 41370210  T
Q  249 gattacataaattttcataaaatcttact 277  Q
    ||||||| |||||||||||||| ||||||    
T  41370209 gattacacaaattttcataaaaacttact 41370181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 13800831 - 13800731
Alignment:
Q  155 ggtcttgttaacgagtgccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattac 254  Q
    |||||||||||||||||||||  ||||||| |||| |||| ||||||| ||||||||| | |||||||| |||||||||||||| | || ||||||||||    
T  13800831 ggtcttgttaacgagtgcccccaacactctttaaggatcctaaatttagaaaatattctttaaaaaagtcaaatattacaaattcctatacattgattac 13800732  T
Q  255 a 255  Q
    |    
T  13800731 a 13800731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 11260548 - 11260640
Alignment:
Q  175 cggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcata 267  Q
    |||||||| | ||| ||||  ||||||||||||||||| | |||||||| |||| ||||||||||||||||| |||||||||| |||||||||    
T  11260548 cggacactttttaaacatcttaaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcaatgattacatatattttcata 11260640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 48315931 - 48316015
Alignment:
Q  191 atcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatctta 275  Q
    |||||||||||  ||||||||| | |||||||| |||| |||||||||||||||||||||||||| || ||||||||||| ||||    
T  48315931 atcccaaattttgaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattacacaacttttcataaaaactta 48316015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 32693052 - 32692965
Alignment:
Q  191 atcccaaatttaaaaaatattcctcaaaaaa-gttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||||| |||||||||||||| |||||| | ||||| |||||||||||||| ||||||||||| | |||||||||||| ||||||    
T  32693052 atcccaaatataaaaaatattccttaaaaaaaggtaaatgttacaaatttcaatacattgattacacatattttcataaaaacttact 32692965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 47461146 - 47461055
Alignment:
Q  186 taagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    |||| ||| |||||||||||||||||  | |||||| |||||||||| ||||||||||| |||||||| ||| |||||||||||| ||||||    
T  47461146 taaggatctcaaatttaaaaaatattattaaaaaaaattaaatattataaatttcaatgtattgattatatatattttcataaaaacttact 47461055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 12618809 - 12618709
Alignment:
Q  175 cggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatctt 274  Q
    |||||||||| ||||||| ||||||||| ||| ||||  |  ||||||| |||| ||| |||||||||||||||||||| | |||||||||||||| |||    
T  12618809 cggacactctttaagcattccaaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttcataaaaactt 12618710  T
Q  275 a 275  Q
    |    
T  12618709 a 12618709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 134814 - 134924
Alignment:
Q  155 ggtcttgttaacgagtgccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattac 254  Q
    ||||||||||||||||| ||| |||||||| ||||  || ||||||||  |||||||| | ||||| ||||||| ||| ||||||||||  |||||||||    
T  134814 ggtcttgttaacgagtgtccccgacactctgtaagggtctcaaatttagtaaatattctttaaaaaggttaaatgttataaatttcaat-aattgattac 134912  T
Q  255 ataaattttcat 266  Q
    ||| ||||||||    
T  134913 atagattttcat 134924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 14949061 - 14949007
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  14949061 aaaaaagtcaaatgttacaaatttcaatgcattgattacacaaattttcataaaa 14949007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 36112510 - 36112594
Alignment:
Q  159 ttgttaacgagtgccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatg 244  Q
    |||||||| |||| || ||||||||| |||| |||||||||| ||||||||||| | |||||| |||||| |||||||||||||||    
T  36112510 ttgttaacaagtgtcctggacactctttaaggatcccaaattaaaaaaatattctttaaaaaa-ttaaatgttacaaatttcaatg 36112594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 31072608 - 31072505
Alignment:
Q  154 gggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgat 251  Q
    ||||||||||||||||||||||  || |||||| |||| |||  ||||||| ||||||||| |  ||||||| |||| ||||||||| | ||||||||||    
T  31072608 gggtcttgttaacgagtgcccccgggccactctttaaggatcataaatttagaaaatattctttgaaaaagtcaaatgttacaaattcctatgcattgat 31072509  T
Q  252 taca 255  Q
    ||||    
T  31072508 taca 31072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 16555979 - 16556058
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatctta 275  Q
    ||||||| |||||||| || | || | | ||||||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  16555979 aaatttagaaaatatttcttacaacattcaaatattacaaatttcaatgcattgattacacaaatttttataaaaactta 16556058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 41956565 - 41956450
Alignment:
Q  157 tcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattac 254  Q
    |||| ||||||||||||||  ||||||||| ||||||  ||||| | | ||| ||||| | || ||| ||||||||| ||| |||||| |||||||||||    
T  41956565 tcttattaacgagtgcccccaggacactctttaagcaatccaaaataagaaagtattctttaagaaatttaaatatttcaattttcaacgcattgattac 41956466  T
Q  255 ataaattttcataaaa 270  Q
    | || |||||||||||    
T  41956465 acaatttttcataaaa 41956450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 5799080 - 5799006
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||||| ||||||||| |  ||||||| ||||||||||||||| ||||| ||||||| | ||||||| ||||||    
T  5799080 aaatttagaaaatattcttttaaaaagtcaaatattacaaatttaaatgcgttgattatacaaatttttataaaa 5799006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 24981803 - 24981873
Alignment:
Q  195 caaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttca 265  Q
    |||||||| ||||||||| | ||||||||||||  |||||||||  ||||||||||||||| || ||||||    
T  24981803 caaatttagaaaatattctttaaaaaagttaaacgttacaaattcaaatgcattgattacacaatttttca 24981873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 43956098 - 43956156
Alignment:
Q  145 ttatagttagggtcttgttaacgagtgccccggacactctataagcatcccaaatttaa 203  Q
    ||||| |||||||||||||||| |||| |||||||||||| |||| |||| ||||||||    
T  43956098 ttataattagggtcttgttaacaagtgtcccggacactctttaaggatcctaaatttaa 43956156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 47741068 - 47740998
Alignment:
Q  178 acactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcatt 248  Q
    ||||||| |||| || |||||||| ||||||| ||||  ||||||||||||||||||||||| ||| ||||    
T  47741068 acactctttaagaattccaaatttgaaaaatactccttcaaaaagttaaatattacaaattttaatacatt 47740998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 10099374 - 10099447
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagtt-aaatattacaaatttcaatgcattgattacataaattttcataa 268  Q
    ||||||||||||||||  | |||||| || |||| |||||||||||||| |||| |||||| ||||||||||||    
T  10099374 aaatttaaaaaatattttttaaaaaaattcaaattttacaaatttcaatacattaattacacaaattttcataa 10099447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 14949400 - 14949347
Alignment:
Q  156 gtcttgttaacgagtgccccggacactctataagcatcccaaatttaaaaaata 209  Q
    |||||||||| |||||| || |||||||| |||| |||||||||||||||||||    
T  14949400 gtcttgttaaagagtgctcccgacactctttaaggatcccaaatttaaaaaata 14949347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 36721660 - 36721599
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    |||||||| ||||||| ||| | ||||||||||||||||| |||||| ||||||| ||||||    
T  36721660 aaaaaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttact 36721599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 53391345 - 53391272
Alignment:
Q  179 cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatt 252  Q
    |||||| |||| || | ||||||| ||||||||| | ||| |||| |||| |||||||||||||||||||||||    
T  53391345 cactctttaagaatactaaatttagaaaatattcttaaaagaagtcaaatgttacaaatttcaatgcattgatt 53391272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 8297838 - 8297889
Alignment:
Q  153 agggtcttgttaacgagtgcccc--ggacactctataagcatcccaaattta 202  Q
    |||||||||||||||||||||||  || |||||| |||||||||||||||||    
T  8297838 agggtcttgttaacgagtgcccccggggcactctttaagcatcccaaattta 8297889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 30624707 - 30624787
Alignment:
Q  195 caaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatctta 275  Q
    ||||||| |||||||||  | |||||||| |||  ||||||||||||||||| | ||||||||  ||||||||||| ||||    
T  30624707 caaattttaaaaatattgtttaaaaaagtcaaaagttacaaatttcaatgcactaattacatagtttttcataaaaactta 30624787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 34235945 - 34236005
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttac 276  Q
    |||||||| ||| ||| ||| |||||||||||||||||||| |||||||| ||||| ||||    
T  34235945 aaaaaagtcaaaaatttcaattttcaatgcattgattacattaattttcaaaaaatattac 34236005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 49532391 - 49532340
Alignment:
Q  151 ttagggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatt 200  Q
    |||||||||||||||||||||||||  ||||||||| ||||||| |||||||    
T  49532391 ttagggtcttgttaacgagtgcccccgggacactctgtaagcattccaaatt 49532340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 14603831 - 14603760
Alignment:
Q  202 aaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatct 273  Q
    ||||||||||  | |||||| | ||||||||||| ||||||||| |||| |||| ||| |||||||||||||    
T  14603831 aaaaaatattttttaaaaaattcaaatattacaagtttcaatgcgttgaatacacaaactttcataaaatct 14603760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 50086544 - 50086429
Alignment:
Q  155 ggtcttgttaacgagtgcccc-ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    ||||||||||||||||||||| ||| ||||| ||| ||| ||||| | || || ||||| | |||||| | |||||||   | |||||||||||||| ||    
T  50086544 ggtcttgttaacgagtgccccgggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaata 50086445  T
Q  254 cataaattttcataaa 269  Q
    || | |||||||||||    
T  50086444 cacatattttcataaa 50086429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 37060522 - 37060568
Alignment:
Q  156 gtcttgttaacgagtgccccggacactctataagcatcccaaattta 202  Q
    |||||||||||||||||| | || ||||| |||||||||||||||||    
T  37060522 gtcttgttaacgagtgcctccgagactctttaagcatcccaaattta 37060568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 270
Target Start/End: Original strand, 2063444 - 2063561
Alignment:
Q  154 gggtcttgttaacgagtgc-cccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatt 252  Q
    ||||||||||||||||||| |||||||||||| ||||||| | |||||   ||  ||||| | |||||||| ||| | | ||| || ||||| ||| | |    
T  2063444 gggtcttgttaacgagtgctcccggacactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaaat 2063543  T
Q  253 acataaattttcataaaa 270  Q
    ||| ||||||||||||||    
T  2063544 acacaaattttcataaaa 2063561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 7852657 - 7852568
Alignment:
Q  177 gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcat 266  Q
    |||||||| ||||||||| |||||||  || ||||| |  ||||| |||| |||||||| |||||||||||| | |||| || |||||||    
T  7852657 gacactctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcat 7852568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 47995810 - 47995761
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaattttcat 266  Q
    |||||||||| |||||||| |||||||||||| | ||||||| |||||||    
T  47995810 aaaaagttaattattacaattttcaatgcattcaatacataacttttcat 47995761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 54495513 - 54495574
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    |||||||||||| | | ||| |||||||||||||||| |||||| ||| |||||| ||||||    
T  54495513 aaaaaagttaaaaactccaattttcaatgcattgatttcataaactttgataaaaacttact 54495574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 29256875 - 29256823
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcatt 248  Q
    ||||||||||| |||||||  ||||| | |||||||| |||||||||||||||    
T  29256875 aaatttaaaaattattccttcaaaaaataaaatattataaatttcaatgcatt 29256823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 35777838 - 35777723
Alignment:
Q  153 agggtcttgttaacgagtgcc--ccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||| ||||||  | ||| ||||| ||| |||||||||||||  || ||||| |  |||||||||| |||||||| ||  |||||||| |    
T  35777838 agggtcttgttaactagtgccttcaggatactctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattca 35777739  T
Q  251 ttacataaattttcat 266  Q
     |||| || |||||||    
T  35777738 atacacaacttttcat 35777723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 267
Target Start/End: Complemental strand, 45900287 - 45900172
Alignment:
Q  154 gggtcttgttaacgagtgccccgga--cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgat 251  Q
    |||||||||||||||||||||| ||  |||||| ||||||||| |||||||  || ||||| |  | ||||| || ||| |||| || ||||||||| |     
T  45900287 gggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgcattcaa 45900188  T
Q  252 tacataaattttcata 267  Q
    |||| || ||||||||    
T  45900187 tacacaacttttcata 45900172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 39150550 - 39150676
Alignment:
Q  154 gggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgat 251  Q
    ||||||||||||||||||||||  || |||||| ||||||||| |||||||  || ||||| |  ||||||| || |||||||| || ||||||||| |     
T  39150550 gggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaa 39150649  T
Q  252 tacataaattttca-taaaatcttact 277  Q
    |||||||||||||| ||||||||||||    
T  39150650 tacataaattttcattaaaatcttact 39150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 43025050 - 43024933
Alignment:
Q  155 ggtcttgttaacgagtgccccg--gacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatt 252  Q
    ||||||||||||||||| | |   |||||||| |||| |||| | ||||||||||||||  | |||||| |||||||||||||||||||||||| |||||    
T  43025050 ggtcttgttaacgagtgtctccatgacactctttaaggatcctatatttaaaaaatattatttaaaaaaattaaatattacaaatttcaatgcactgatt 43024951  T
Q  253 acataaattttcataaaa 270  Q
    |||   ||||||||||||    
T  43024950 acacgtattttcataaaa 43024933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 45775824 - 45775918
Alignment:
Q  153 agggtcttgttaacgagtg--ccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgc 245  Q
    |||||||||||||||||||  |||  |||||||| |||| |||| |||||||||||||||||||  |||||| ||||| ||||||||| ||||||    
T  45775824 agggtcttgttaacgagtggtcccatgacactctttaaggatcctaaatttaaaaaatattcctttaaaaagataaatgttacaaattccaatgc 45775918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 27004122 - 27004043
Alignment:
Q  191 atcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||| ||||||||||||||||  | ||||||||||||| |||  ||||||||||||||||||||| || ||||| |||||    
T  27004122 atcctaaatttaaaaaatattttttaaaaaagttaaatgttatcaatttcaatgcattgattacacaatttttcttaaaa 27004043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 46087065 - 46087182
Alignment:
Q  153 agggtcttgttaacgagtgccccgga-cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgat 251  Q
    ||||||||||||||| |||| || || |||||| |||| |||| ||||||| |||||||||||| |||||||||||| || || |||  |||||| ||||    
T  46087065 agggtcttgttaacgggtgctcccgagcactctttaaggatcctaaatttagaaaatattcctc-aaaaagttaaatgtttcacattctaatgcactgat 46087163  T
Q  252 tacataaattttcataaaa 270  Q
    || | | ||||||||||||    
T  46087164 tatacagattttcataaaa 46087182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 27542856 - 27542929
Alignment:
Q  180 actctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgatta 253  Q
    ||||| |||| || ||||||||||||||||||| | |||||||| |||||||||| ||| ||||| ||||||||    
T  27542856 actctttaaggataccaaatttaaaaaatattctttaaaaaagtcaaatattacatattccaatgtattgatta 27542929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 9534379 - 9534458
Alignment:
Q  191 atcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||||||||||||| ||  | |||||||| |||||||| ||||||||||||| | |||  | ||||||||||||||    
T  9534379 atcccaaatttaaaaaatgttatttaaaaaagtcaaatattataaatttcaatgcactaattttacaaattttcataaaa 9534458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 39914743 - 39914649
Alignment:
Q  154 gggtcttgttaacgagtgc--cccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgca 246  Q
    |||||||||||||||||||  || ||||||||| ||||||| |||||||||| || | ||| |  ||||||| || |||||||| ||||||||||    
T  39914743 gggtcttgttaacgagtgcttccgggacactctttaagcataccaaatttaacaattgttcttttaaaaagtcaactattacaattttcaatgca 39914649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 2484981 - 2484927
Alignment:
Q  223 ttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    |||||||||| ||||||||||||||| | || |||||||||||||||| ||||||    
T  2484981 ttaaatattataaatttcaatgcattaaatatataaattttcataaaagcttact 2484927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 48022503 - 48022386
Alignment:
Q  142 tttttatagttagggtcttgttaacgagtgcccc--ggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaattt 239  Q
    ||||||| ||||||||||||||||||||||||||   |  ||||| ||||||||||| |||||  || ||||  |  |||||||||| |||| ||| |||    
T  48022503 tttttattgttagggtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaatttt 48022404  T
Q  240 caatgcattgattacata 257  Q
    ||||||||| | ||||||    
T  48022403 caatgcattcaatacata 48022386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 3338100 - 3338051
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttca 265  Q
    |||||| |||| |||| ||| |||||||||||||||||||||||||||||    
T  3338100 aaaaaaattaagtatttcaattttcaatgcattgattacataaattttca 3338051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 26756280 - 26756199
Alignment:
Q  196 aaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatcttact 277  Q
    ||||||||||||||||  | |||||||| |||||||||||| |  |||||||| |||||  |||||||| ||||| ||||||    
T  26756280 aaatttaaaaaatattatttaaaaaagtcaaatattacaaactctaatgcatttattactcaaattttcgtaaaaacttact 26756199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 6983101 - 6983013
Alignment:
Q  179 cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcata 267  Q
    |||||| |||| || ||||||| | ||| ||||| | |||| ||| ||||||| ||| |||||||||||||  ||||||||||||||||    
T  6983101 cactctttaagtattccaaattaagaaattattcattaaaagagtcaaatatttcaattttcaatgcattggatacataaattttcata 6983013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 1048780 - 1048690
Alignment:
Q  179 cactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||| ||||||| ||||||| ||||| ||||| | ||||| |||||||| | ||| ||||||||| |||| | ||||| |||||||||||    
T  1048780 cactctttaagcataccaaattaaaaaattattctttaaaaa-gttaaatagttcaattttcaatgcgttgaatgcataatttttcataaaa 1048690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 5423833 - 5423766
Alignment:
Q  203 aaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||| ||||| | |||||||||||||| | ||| |||||||||||| | ||||||| |||||||||||    
T  5423833 aaaattattctttaaaaaagttaaatagttcaattttcaatgcattaaatacataagttttcataaaa 5423766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 26605027 - 26604952
Alignment:
Q  195 caaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||||||| ||||| |  ||||||| || |||||||||||||||| |||||  || | ||||||||||||||    
T  26605027 caaatttaaaaattattcttttaaaaagtaaattattacaaatttcaatacattggatatacaaattttcataaaa 26604952  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 28171556 - 28171509
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaatttt 263  Q
    |||||||||||||||| ||| ||| |||||||| ||||||||||||||    
T  28171556 aaaaaagttaaatatttcaatttttaatgcattcattacataaatttt 28171509  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 45359321 - 45359267
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||||||||| | ||| |||||||||||||| || || |||||||||||||    
T  45359321 aaaaaagttaaatagttcaattttcaatgcattgaatatatgaattttcataaaa 45359267  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 45753482 - 45753536
Alignment:
Q  216 aaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    ||||| || ||||||| ||| ||||||||||||||||||| ||||||||| ||||    
T  45753482 aaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttcaaaaaa 45753536  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 47187955 - 47187845
Alignment:
Q  157 tcttgttaacgagtgcc-ccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    |||||| |||||||| | ||||||||||| |||||||||||||||||  || ||||| |  ||||| | || ||||| || || ||||||||| | ||||    
T  47187955 tcttgtcaacgagtgtctccggacactctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaataca 47187856  T
Q  256 taaattttcat 266  Q
    ||| |||||||    
T  47187855 taatttttcat 47187845  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 15458434 - 15458507
Alignment:
Q  197 aatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaa 270  Q
    |||||||||| ||||| | ||||||||||||| |||||||||  ||| ||||||||  | |||||||| |||||    
T  15458434 aatttaaaaagtattctttaaaaaagttaaatgttacaaattataatacattgattgtacaaattttcgtaaaa 15458507  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 17112730 - 17112791
Alignment:
Q  208 tattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaa 269  Q
    ||||| |||||||||| |||||||   | || |||||||||||||||||| |||||||||||    
T  17112730 tattcttcaaaaaagtcaaatattttgatttccaatgcattgattacatatattttcataaa 17112791  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 2864110 - 2864224
Alignment:
Q  153 agggtcttgttaacgagtg--ccccggacactctataagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattga 250  Q
    |||||||||||||||||||  ||| ||||||||| ||| ||||||| |||||  || |||| ||  ||||||| || |||||||| || ||||||||| |    
T  2864110 agggtcttgttaacgagtgtccccgggacactctttaaacatcccatatttaggaattatt-ctttaaaaagtcaactattacaatttccaatgcattca 2864208  T
Q  251 ttacataaattttcat 266  Q
     |||| || |||||||    
T  2864209 atacacaacttttcat 2864224  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 33744208 - 33744156
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaa 269  Q
    ||||||| ||||||| | | |||||||||||||||||||||  ||||||||||    
T  33744208 aaaaagtcaaatatttcgattttcaatgcattgattacatattttttcataaa 33744156  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 38570427 - 38570379
Alignment:
Q  217 aaaaagttaaatattacaaatttcaatgcattgattacataaattttca 265  Q
    ||||||| ||||||| ||| |||||||||||| ||||||||| ||||||    
T  38570427 aaaaagtcaaatatttcaattttcaatgcattaattacataagttttca 38570379  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 45640550 - 45640618
Alignment:
Q  187 aagcatcccaaatttaaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattaca 255  Q
    ||||||||||||||||| || ||||| |  ||||||| || ||||| || |||||||||||| ||||||    
T  45640550 aagcatcccaaatttaagaactattctttcaaaaagtcaattattataattttcaatgcattcattaca 45640618  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 213547 - 213618
Alignment:
Q  202 aaaaaatattcctcaaaaaagttaaatattacaaatttcaatgcattgattacataaattttcataaaatct 273  Q
    ||||||||||  | |||||| | ||||||||||| ||||||||| |||| |||| ||| |||||||||||||    
T  213547 aaaaaatattttttaaaaaattcaaatattacaagtttcaatgcgttgaatacacaaactttcataaaatct 213618  T

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