View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_44 (Length: 265)
Name: NF11778_low_44
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 39945915 - 39945657
Alignment:
| Q |
7 |
agagagaatttgaatagttatatcatgattctgagttttggttttcaatcactgaggcttggcttatatacaaatcagagaagcttgtctctgattttac |
106 |
Q |
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| T |
39945915 |
agagagaatctgaatagttatatcatgattctgagtttttgttttcaatcactgaggcttggcttatatacaaatcagagaagcttgtctctgattttac |
39945816 |
T |
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| Q |
107 |
tagtcttagcaaactattacagttggcacaacc--------------aaatcaggtgttgtagaaactagtttttagaaggtctggttgtaggcttgtag |
192 |
Q |
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| T |
39945815 |
tagtcttagcaaactattacagttggcacaaccaaatgctagagactaaatcaggtgttgtagaaactagtttttagaaggtctggttgtaggcttgtag |
39945716 |
T |
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| Q |
193 |
caaggatgatgctagaaaatgctctcaaactactactatatgtagatatcaacttagtt |
251 |
Q |
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| T |
39945715 |
caaggatgatgctagaaaatgctctcaaactactactatatgtagatatcaacttagtt |
39945657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 18970913 - 18971012
Alignment:
| Q |
48 |
ttttcaatcactgaggcttggcttatatacaaatcagagaagcttgtctctgattttactagtcttagcaaac----tattacagttggcacaaccaaat |
143 |
Q |
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| T |
18970913 |
ttttcaaccaccgaggtttggcttatatacagataagagaagcctgtctctgatttcactaatcttaacaaactatttattacagctggcacaaccaaat |
18971012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 36702951 - 36702884
Alignment:
| Q |
187 |
ttgtagcaaggatgatgctagaaaatgctctcaaactactactatatgtagatatcaacttagttcat |
254 |
Q |
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| T |
36702951 |
ttgtagcaaggatgatggtggaaaatgctctcaaactacaactgtatgtggttctcaacttagttcat |
36702884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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