View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_47 (Length: 250)
Name: NF11778_low_47
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_47 |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 9082977 - 9083122
Alignment:
| Q |
105 |
tgaatccaaatttatagttgtaaaactttagatgataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagcttta |
204 |
Q |
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| T |
9082977 |
tgaatccaaatttatagttgtaaaaatttagataataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagtttta |
9083076 |
T |
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| Q |
205 |
acaaaattgagtccttagaaaaaagagagccacatggtgaatgctt |
250 |
Q |
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| T |
9083077 |
acacaattgactgcttagaaaagagagagccacgtggtgaatgctt |
9083122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 105 - 250
Target Start/End: Complemental strand, 32664199 - 32664054
Alignment:
| Q |
105 |
tgaatccaaatttatagttgtaaaactttagatgataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagcttta |
204 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32664199 |
tgaatccaaatttatagtgttaaaactttagataataattagaacggtggagctggtaggaatatgtatcaatccaacaaattgtaactgattagcttta |
32664100 |
T |
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| Q |
205 |
acaaaattgagtccttagaaaaaagagagccacatggtgaatgctt |
250 |
Q |
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|||||||||||| ||| ||||| ||||||||||||| ||||||||| |
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| T |
32664099 |
acaaaattgagtgcttggaaaagagagagccacatgatgaatgctt |
32664054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 6414181 - 6414326
Alignment:
| Q |
105 |
tgaatccaaatttatagttgtaaaactttagatgataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagcttta |
204 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6414181 |
tgaatccaaatttatagttgtaaaaatttagataataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagtttta |
6414280 |
T |
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| Q |
205 |
acaaaattgagtccttagaaaaaagagagccacatggtgaatgctt |
250 |
Q |
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||| |||||| | ||||||||| |||||||||| |||||||||||| |
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| T |
6414281 |
acacaattgactgcttagaaaagagagagccacgtggtgaatgctt |
6414326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 26297511 - 26297656
Alignment:
| Q |
105 |
tgaatccaaatttatagttgtaaaactttagatgataattagaacggtggagctgttaggaatatgtatcaatccaacaaattgtaactcattagcttta |
204 |
Q |
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|||||||||||||||||||||| || |||||| |||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||| |
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| T |
26297511 |
tgaatccaaatttatagttgtagaaatttagacaataattagaatggtggagctattacgaatatgtatcaatccaataaattgtaactcattagtttta |
26297610 |
T |
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| Q |
205 |
acaaaattgagtccttagaaaaaagagagccacatggtgaatgctt |
250 |
Q |
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|||||||||||| |||| |||| | || |||||||||||||||||| |
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| T |
26297611 |
acaaaattgagtgcttataaaagacagcgccacatggtgaatgctt |
26297656 |
T |
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