View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_low_5 (Length: 695)
Name: NF11778_low_5
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_5 |
 | |
|
| [»] scaffold0026 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0026 (Bit Score: 487; Significance: 0; HSPs: 4)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 134 - 680
Target Start/End: Original strand, 100039 - 100592
Alignment:
| Q |
134 |
taacacataacatggaagagaacaagaaaactatggagaaaagtgttggtttgacagaagagcaagaagctctagtggtaaaatcatggaatgcaatgaa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
100039 |
taacacataacatggaagagaacaagaaaactatggagaaaagtgttggtttcacagaagagcaagatgctctagtggtaaaatcatggaatgcaatgaa |
100138 |
T |
|
| Q |
234 |
gaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatttcatttcagtaattaatccatttttcaactcttctgttaattatattaatt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
100139 |
gaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatttcatttcagtaattaatccatttttcaactcttctgttaattatattaatt |
100238 |
T |
|
| Q |
334 |
aattttcagctggtaagttaactagacatgtttttgaccaattgagta---tcactcatgattga----attctgacttgttagaatactggagattgct |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
100239 |
aattttcagctggtaagttaactagacatgtttttgaccaattgagtagtatcactcgtgatttatttaattctgacttgttagaatactggagattgct |
100338 |
T |
|
| Q |
427 |
ccaccagccaagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagccacatgcaatgtctgtctttctaatgg |
526 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
100339 |
ccaccagctaaacaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagccacatgctatgtctgtctttctcatgg |
100438 |
T |
|
| Q |
527 |
taagcttaacaattaacaccatataattagtataattgaggtttagacaatgatcttgtgacttaaattagaaattaaaataagtttctagttactaata |
626 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
100439 |
taagcttaaaaattaacaccatataattagtataattgaggtttagacaatgatcttgtgacttaaattagaaattaaaataagtttctagttactaata |
100538 |
T |
|
| Q |
627 |
tgatactcattttcaatatactactacagcataaatgaattacatgttgtgtct |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
100539 |
tgatactcattttcaatatactactacagcataaatgaattacatgttgtgtct |
100592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 99461 - 99598
Alignment:
| Q |
5 |
acatcatcttaaatttcaaacaatgaatctcactataaaaaccgtaacaaagcaaactacaacatcaactatttcatcatcctttgccactaccaccaca |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
99461 |
acatcatcttaaattttaaacaatgaatctcactataaaaaccgtaacaaagcaaactacaacatcaactatttcatcatcctttgccactaccaccaca |
99560 |
T |
|
| Q |
105 |
atttaataaacaaatattacactaccttataacacata |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
99561 |
atttaataaacaaatattacactaccttataacacata |
99598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 529
Target Start/End: Original strand, 102389 - 102518
Alignment:
| Q |
400 |
tgacttgttagaatactggagattgctccaccagccaagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagc |
499 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||| |||||| | || |||||||||| |||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
102389 |
tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagc |
102488 |
T |
|
| Q |
500 |
cacatgcaatgtctgtctttctaatggtaa |
529 |
Q |
| |
|
| ||||| |||||||||||||| ||||||| |
|
|
| T |
102489 |
ctcatgccatgtctgtctttctcatggtaa |
102518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 102195 - 102281
Alignment:
| Q |
196 |
caagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatt |
282 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||| || || | || |||||||||||||||||||||| ||||| |||| |
|
|
| T |
102195 |
caagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaagtcatt |
102281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 5 - 623
Target Start/End: Complemental strand, 25850283 - 25849646
Alignment:
| Q |
5 |
acatcatcttaaatttcaaacaatgaatctcactataaaaaccgtaacaaagcaaactacaacatcaactatttcatcatcctttgccactaccaccaca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25850283 |
acatcatcttaaatttcaaacaatgaatctcactataaaaaccgtaacaaagcaaactacaacatcaactatttcatcatcctttgccactaccaccaca |
25850184 |
T |
|
| Q |
105 |
atttaataaacaaatattacactaccttataacacataacatggaagagaacaagaaaactatggagaaaagtgttggtttgacagaagagcaagaagct |
204 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
25850183 |
atttaataaataaatattatactctcttataacacataacatggaagagaacaagaaaactgtggatggaagtgttgatttcacagaagagcaagaagct |
25850084 |
T |
|
| Q |
205 |
ctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatttcatttcagtaattaa-tccat |
303 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||||||||||| |||||||| ||||||||||| ||||||| | || |
|
|
| T |
25850083 |
ctagtggtaaagtcatggaacgcaatgaagaataattcttgtgacctgagtctcaagtttttcacgaagtaagacatttcatttccttaattaattaaat |
25849984 |
T |
|
| Q |
304 |
ttttcaactcttctgttaattatattaattaattttcagctggtaagttaactagacatgtttttgaccaattg--------agtatcactcatg----a |
391 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || | |
|
|
| T |
25849983 |
ttatcaactcttctgttaattatattaattaattttcagctggtaagttaactagacatgtttttgaccaattgagtagtatagtatcactcgtgattta |
25849884 |
T |
|
| Q |
392 |
ttgaattctgacttgttagaatactggagattgctccaccagccaagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaa |
491 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
25849883 |
tttaattctgacttgttagaatactggagattgctccaccagctaagcaaatgttttcattcttaaaagattcaaatgttcctttggagcaaaatcctaa |
25849784 |
T |
|
| Q |
492 |
gctcaagccacatgcaatgtctgtctttctaatggtaagcttaacaa---ttaacaccatataattagtataattgaggtttagacaatgatc---ttgt |
585 |
Q |
| |
|
||| ||||| ||||| |||||||| ||||| ||||||||| |||||| |||||| ||| |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
25849783 |
gcttaagcctcatgctatgtctgtttttctcatggtaagcataacaatatttaacatcatctaattagtgtaattgaggtttagacaatgatcttgttgt |
25849684 |
T |
|
| Q |
586 |
gacttaaattagaaattaaaataagtttctagttacta |
623 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
25849683 |
gacttatattagaaattaaaataagtttccagttacta |
25849646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 400 - 534
Target Start/End: Complemental strand, 25847898 - 25847764
Alignment:
| Q |
400 |
tgacttgttagaatactggagattgctccaccagccaagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagc |
499 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||| |||||| |||| ||||||||||||||||||||||| || ||||| || |||||||||||||||| |
|
|
| T |
25847898 |
tgacatgttagaatccttgagattgctccaccagctaagcaattgttctcattcttaaaagattcaaatgttccattggagcacaatcctaagctcaagc |
25847799 |
T |
|
| Q |
500 |
cacatgcaatgtctgtctttctaatggtaagctta |
534 |
Q |
| |
|
| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
25847798 |
ctcatgccatgtctgtctttcttatggtaagctta |
25847764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 25848104 - 25848018
Alignment:
| Q |
196 |
caagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatt |
282 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||| | || ||||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
25848104 |
caagaagctctagtggtgaagtcatggaatgcaatcaagtacaactctggagatctgagtctcaagtttttcaagaagtaagtcatt |
25848018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 530
Target Start/End: Complemental strand, 25845656 - 25845534
Alignment:
| Q |
408 |
tagaatactggagattgctccaccagccaagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagccacatgca |
507 |
Q |
| |
|
||||||| | |||||||||||| |||| | || |||| |||||||| ||||||||||| || |||||||| | || | ||||||||||||||||| |
|
|
| T |
25845656 |
tagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagaaaaacaccaagctcaagccacatgcc |
25845557 |
T |
|
| Q |
508 |
atgtctgtctttctaatggtaag |
530 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
25845556 |
atgtctgtctttctcatggtaag |
25845534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 25845847 - 25845784
Alignment:
| Q |
181 |
ggtttgacagaagagcaagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctg |
244 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
25845847 |
ggtttcactgaagaacaagaagctcttgtggtgaagtcatggaatgcaatgaagaagaattctg |
25845784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University