View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_low_52 (Length: 240)

Name: NF11778_low_52
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_low_52
NF11778_low_52
[»] chr8 (16 HSPs)
chr8 (18-240)||(4891346-4891565)
chr8 (55-240)||(4906050-4906231)
chr8 (52-240)||(4713773-4713958)
chr8 (132-240)||(4777542-4777649)
chr8 (65-226)||(4687946-4688106)
chr8 (77-240)||(4914497-4914656)
chr8 (55-240)||(21440560-21440740)
chr8 (161-224)||(4735777-4735840)
chr8 (55-125)||(4725225-4725295)
chr8 (52-123)||(4744692-4744763)
chr8 (173-224)||(4744793-4744844)
chr8 (187-240)||(4702563-4702616)
chr8 (55-124)||(4926342-4926411)
chr8 (55-128)||(10445502-10445575)
chr8 (55-125)||(4735690-4735764)
chr8 (191-223)||(4995367-4995399)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 4891565 - 4891346
Alignment:
Q  18 gatgggaacggtactgcattttcttttggtattctttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4891565 gatgggaacggtactgcattttcttttggtattctttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgt 4891466  T
Q  118 cacatattaatcactactagtaattattatagttgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggt 217  Q
    ||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4891465 cacatattaatc---actagtaattattgtagttgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagattgtggt 4891369  T
Q  218 ctacctgaaaatttgaactattc 240  Q
    |||||||||||||||||||||||    
T  4891368 ctacctgaaaatttgaactattc 4891346  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 4906231 - 4906050
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaa 154  Q
    ||||| ||| ||||||| ||||||||||||||| |||  |||||   ||||||||||||||||||||| ||  | |||| || | |||||| ||| ||||    
T  4906231 gttttgatacaagctcaggatcaatcaggtttgattaggaatttttctatagctgctttatgtcacatttttgttactagtaattattattgtagctgaa 4906132  T
Q  155 gttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    |||||    |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  4906131 gttat----cttaatttgttcctaaatttatatgtatcaggattcattagcttagactgcggtctacctgaacatttgagctattc 4906050  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 4713773 - 4713958
Alignment:
Q  52 tttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagta-attattatagt 150  Q
    |||||||| ||| ||||||| |||||||||||||||||||| ||||||  |||||||||||| |||||||||||  | |||| || || |||||| ||||    
T  4713773 tttgttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagctgctttctgtcacatatttgttactagtaatatattattgtagt 4713872  T
Q  151 tgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    ||| ||    || |||||||||||| ||||||||||| ||||||||||||||||| |||| ||||| |||||| || || | ||||||||    
T  4713873 tgatgt----taccttaatttgttcttcaatttatatgtatcaggattcattagcatagattgtggcctacctaaagatatcaactattc 4713958  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 4777649 - 4777542
Alignment:
Q  132 tactagtaattattatagttgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaattt 231  Q
    |||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||    
T  4777649 tacttgtaattattatagttgaa-taatttatcttaatttgttcctcaatttatatgtatcaggattcattagcatagattgtggtctacctgaacattt 4777551  T
Q  232 gaactattc 240  Q
    || ||||||    
T  4777550 gagctattc 4777542  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 4687946 - 4688106
Alignment:
Q  65 aagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattat---agttgaagttatat 161  Q
    ||||||| ||||||||||||||| |||| | ||| | ||||| | ||||||||||||||||  | ||||||||||||||||||   ||||||||||||      
T  4687946 aagctcaggatcaatcaggtttggttatgatttttcatatagttactttatgtcacatatttgttactactagtaattattattgtagttgaagttat-- 4688043  T
Q  162 atcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaa 226  Q
      ||||||||||||||| |||||||| | ||||||||||||||| |||| ||||||||| |||||    
T  4688044 --cttaatttgttcctctatttatatgtctcaggattcattagcatagattgtggtctatctgaa 4688106  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 4914656 - 4914497
Alignment:
Q  77 aatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaagttatatatcttaatttgttcc 176  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||||| |  | |||| || | ||| || ||| |||||||||    |||||||||||||    
T  4914656 aatcaggtttgtttatgaatttgtctatacctgctttatgtcacatagttgttactagtaattatttttgtagatgaagttat----cttaatttgttcc 4914561  T
Q  177 tcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    ||||||||||| |||||||||||||||||||||| ||||||| || |||| || |||| |||||    
T  4914560 tcaatttatatgtatcaggattcattagcttagattgtggtcaacatgaagatgtgaaatattc 4914497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 21440740 - 21440560
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaa 154  Q
    ||||| ||| ||||||| ||||||||||||||||||   ||||||  |||| || ||| ||||||||||||  || | | || | ||| || ||| ||||    
T  21440740 gttttgatacaagctcaggatcaatcaggtttgttttcgaatttgtctatacctacttcatgtcacatattgttccc-agtaattatttttgtagctgaa 21440642  T
Q  155 gttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    |||||    |||||||||||| | ||||||||| |||||||||||||||||||||| ||||| | ||||||| ||  |||||||||    
T  21440641 gttat----cttaatttgttcataaatttatatgtatcaggattcattagcttagattgtgggcgacctgaagatgcgaactattc 21440560  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 4735777 - 4735840
Alignment:
Q  161 tatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctg 224  Q
    |||||||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  4735777 tatcttaagtttttcctcaatttatatgtatcaggattcattagcatagattgtggtctacctg 4735840  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 4725225 - 4725295
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatatt 125  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||  ||||||| |||| |||||||||||    
T  4725225 gttttgatacaagctcaagatcaatcaggtttgtttatgaatttgtctatagcttctttctgtcacatatt 4725295  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 4744692 - 4744763
Alignment:
Q  52 tttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacata 123  Q
    |||||||| ||| ||||||| |||||||||||||||||||| ||||||  ||||||| |||| |||||||||    
T  4744692 tttgttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagcttctttctgtcacata 4744763  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 4744793 - 4744844
Alignment:
Q  173 ttcctcaatttatatatatcaggattcattagcttagactgtggtctacctg 224  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||| |||||||    
T  4744793 ttcctcaatttatatgtatcaggattcattagcatagattgtggcctacctg 4744844  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 4702563 - 4702616
Alignment:
Q  187 tatatcaggattcattagcttagactgtggtctacctgaaaatttgaactattc 240  Q
    ||||||||||||||||||||||||||| ||||||||| || || | ||||||||    
T  4702563 tatatcaggattcattagcttagactgcggtctacctaaagatgtcaactattc 4702616  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 4926411 - 4926342
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatat 124  Q
    ||||| ||| ||||||| ||||||||||||| | |||| ||||||  ||||| |||||||||||||||||    
T  4926411 gttttgatacaagctcaggatcaatcaggttgggttattaatttgtatatagttgctttatgtcacatat 4926342  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 10445502 - 10445575
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaat 128  Q
    ||||| ||| ||||||| |||||||||||||||||||| ||||||  ||||||  |||||| ||||||| ||||    
T  10445502 gttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagcatctttatatcacatagtaat 10445575  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 4735690 - 4735764
Alignment:
Q  55 gttttaataaaagctcaagatcaatcaggtttgtttataaatttg-ct---tatagctgctttatgtcacatatt 125  Q
    ||||| ||| ||||||| |||||||||||||||||||| |||||| ||   |||||||||||| |||||||||||    
T  4735690 gttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatatatagctgctttctgtcacatatt 4735764  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 4995367 - 4995399
Alignment:
Q  191 tcaggattcattagcttagactgtggtctacct 223  Q
    |||||||||||||||||||| ||||||||||||    
T  4995367 tcaggattcattagcttagattgtggtctacct 4995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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