View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_low_54 (Length: 239)
Name: NF11778_low_54
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_54 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 54290684 - 54290906
Alignment:
| Q |
1 |
ttctatattttctttctggcgaaaggtttgagaataaagtgaaattagattggtcaaatccatttaaacacgatgcctattttcctatttttggtcatgg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54290684 |
ttctatattttctttctggcaaaaggtttgagaataaagtcaaattagattggtcaaatccatttacacacgatgcctattttcctatttttggtcatgg |
54290783 |
T |
|
| Q |
101 |
tagccttaatggcacattgtgtctccatgaatgttgtgttgatgacaaacatgtattgtggaacccagctacccacaaatttacggtcattcctcgtagt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54290784 |
tagccttaatggcacactgtgtctccatgaatgttgtgttgatgacaaacatgtattgtggaacccagctacccacaaatttacggtcattcctcatagt |
54290883 |
T |
|
| Q |
201 |
ccggttgagtcaatcgagtctct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
54290884 |
ccggttgagtcaatcgagtctct |
54290906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 37895402 - 37895459
Alignment:
| Q |
153 |
gtattgtggaacccagctacccacaaatttacggtcattcctcgtagtccggttgagt |
210 |
Q |
| |
|
||||| ||||||||||||||| ||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
37895402 |
gtattatggaacccagctaccaacaaattcaaggtcattcctcatagtccggttgagt |
37895459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 20426074 - 20426133
Alignment:
| Q |
152 |
tgtattgtggaacccagctacccacaaatttacggtcattcctcgtagtccggttgagtc |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||||||||| |||||||| |||||| |
|
|
| T |
20426074 |
tgtattgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtc |
20426133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 37895147 - 37895189
Alignment:
| Q |
24 |
aggtttgagaataaagtgaaattagattggtcaaatccattta |
66 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
37895147 |
aggtttgtgaataaagtcaaattagattggttaaatccattta |
37895189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 15632114 - 15632067
Alignment:
| Q |
6 |
tattttctttctggcgaaaggtttgagaataaagtgaaattagattgg |
53 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||| |||||||||||| |
|
|
| T |
15632114 |
tattttctttctggtgaaaggtttgagagtagagttaaattagattgg |
15632067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 17017 - 16960
Alignment:
| Q |
6 |
tattttctttctggcgaaaggtttgagaataaagtgaaattagattggtcaaatccat |
63 |
Q |
| |
|
|||| ||||||||| || |||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
17017 |
tattctctttctggtgagaggtttgagaataaggtcaaattagatttctcaaatccat |
16960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 29136731 - 29136767
Alignment:
| Q |
145 |
acaaacatgtattgtggaacccagctacccacaaatt |
181 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
29136731 |
acaaacatgtattatggaacccagctacccagaaatt |
29136767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University